Gene.md

Gene

A gene in the human or mouse genomes. The genes objects in IGVF are imported from GENCODE.

Properties

Name	Type	Description	Notes
release_timestamp	str	The date the object was released.	[optional]
transcriptome_annotation	str	The annotation and version of the reference resource.	[optional]
taxa	str	The species of the organism.	[optional]
status	str	The status of the metadata object.	[optional]
schema_version	str	The version of the JSON schema that the server uses to validate the object.	[optional]
uuid	str	The unique identifier associated with every object.	[optional]
notes	str	DACC internal notes.	[optional]
aliases	List[str]	Lab specific identifiers to reference an object.	[optional]
creation_timestamp	str	The date the object was created.	[optional]
submitted_by	str	The user who submitted the object.	[optional]
submitter_comment	str	Additional information specified by the submitter to be displayed as a comment on the portal.	[optional]
description	str	A plain text description of the object.	[optional]
geneid	str	ENSEMBL GeneID of official nomenclature approved gene. The GeneID does not include the current version number suffix.	[optional]
symbol	str	Gene symbol approved by the official nomenclature.	[optional]
name	str	The full gene name preferably approved by the official nomenclature.	[optional]
synonyms	List[str]	Alternative symbols that have been used to refer to the gene.	[optional]
dbxrefs	List[str]	Unique identifiers from external resources.	[optional]
locations	List[GeneLocation1]	Gene locations specified using 1-based, closed coordinates for different versions of reference genome assemblies.	[optional]
version_number	str	Current ENSEMBL GeneID version number of the gene.	[optional]
id	str		[optional]
type	List[str]		[optional]
summary	str	A summary of the object.	[optional]
title	str		[optional]
geneid_with_version	str	The ENSEMBL GeneID concatenated with its version number.	[optional]

Example

from igvf_client.models.gene import Gene

# TODO update the JSON string below
json = "{}"
# create an instance of Gene from a JSON string
gene_instance = Gene.from_json(json)
# print the JSON string representation of the object
print(Gene.to_json())

# convert the object into a dict
gene_dict = gene_instance.to_dict()
# create an instance of Gene from a dict
gene_from_dict = Gene.from_dict(gene_dict)

[Back to Model list] [Back to API list] [Back to README]