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AuxiliarySet

A file set for auxiliary raw data files that were produced alongside raw data files from a measurement set. For example, in a CRISPR screen experiment the measurement set would capture the result of single-cell transcript sequencing and the auxiliary set the result of gRNA sequencing with the associated cellular barcodes.

Properties

Name Type Description Notes
release_timestamp str The date the object was released. [optional]
publication_identifiers List[str] The publication identifiers that provide more information about the object. [optional]
documents List[str] Documents that provide additional information (not data file). [optional]
lab str Lab associated with the submission. [optional]
award str Grant associated with the submission. [optional]
accession str A unique identifier to be used to reference the object prefixed with PKB. [optional]
alternate_accessions List[str] Accessions previously assigned to objects that have been merged with this object. [optional]
collections List[str] Some samples are part of particular data collections. [optional]
status str The status of the metadata object. [optional]
revoke_detail str Explanation of why an object was transitioned to the revoked status. [optional]
url str An external resource with additional information. [optional]
schema_version str The version of the JSON schema that the server uses to validate the object. [optional]
uuid str The unique identifier associated with every object. [optional]
notes str DACC internal notes. [optional]
aliases List[str] Lab specific identifiers to reference an object. [optional]
creation_timestamp str The date the object was created. [optional]
submitted_by str The user who submitted the object. [optional]
submitter_comment str Additional information specified by the submitter to be displayed as a comment on the portal. [optional]
description str A plain text description of the object. [optional]
dbxrefs List[str] Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF file sets. [optional]
samples List[str] The sample(s) associated with this file set. [optional]
donors List[str] The donors of the samples associated with this auxiliary set. [optional]
file_set_type str The category that best describes this auxiliary file set. [optional]
library_construction_platform str The platform used to construct the library sequenced in this auxiliary set. [optional]
id str [optional]
type List[str] [optional]
summary str [optional]
files List[str] The files associated with this file set. [optional]
control_for List[str] The file sets for which this file set is a control. [optional]
submitted_files_timestamp str The timestamp the first file object in the file_set or associated auxiliary sets was created. [optional]
input_file_set_for List[str] The file sets that use this file set as an input. [optional]
measurement_sets List[str] The measurement sets that link to this auxiliary set. [optional]

Example

from igvf_client.models.auxiliary_set import AuxiliarySet

# TODO update the JSON string below
json = "{}"
# create an instance of AuxiliarySet from a JSON string
auxiliary_set_instance = AuxiliarySet.from_json(json)
# print the JSON string representation of the object
print(AuxiliarySet.to_json())

# convert the object into a dict
auxiliary_set_dict = auxiliary_set_instance.to_dict()
# create an instance of AuxiliarySet from a dict
auxiliary_set_from_dict = AuxiliarySet.from_dict(auxiliary_set_dict)

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