diff --git a/.github/workflows/update-copyright-dates.yml b/.github/workflows/update-copyright-dates.yml new file mode 100644 index 0000000..32ebac2 --- /dev/null +++ b/.github/workflows/update-copyright-dates.yml @@ -0,0 +1,64 @@ +name: Update copyright dates + +on: + schedule: + # Run every first day of the year at 09:00 AM UTC + - cron: '0 9 1 1 *' + workflow_dispatch: + # Allow manual triggering + push: + branches: + - "*" + +jobs: + check-links: + runs-on: ubuntu-latest + permissions: + contents: write + pull-requests: write + + steps: + - name: Checkout repository + uses: actions/checkout@v4 + + - name: Set up Python + uses: actions/setup-python@v5 + with: + python-version: '3.x' + + - name: Install bdip-tools + run: pip install --extra-index-url https://maven.sing-group.org/repository/python-snapshots/simple/ bdip-tools + + - name: Git config + run: | + git config user.name "github-actions[bot]" + git config user.email "41898282+github-actions[bot]@users.noreply.github.com" + + - name: Update copyright dates + id: update-dates + run: | + set +e + bdip update-copyright-dates --git . + EXIT_CODE=$? + set -e + + if [ $EXIT_CODE -eq 0 ]; then + echo "Changes were made and committed to branch" + echo "has_changes=true" >> $GITHUB_OUTPUT + else + echo "No copyright updates needed" + echo "has_changes=false" >> $GITHUB_OUTPUT + fi + + - name: Create Pull Request + if: steps.update-dates.outputs.has_changes == 'true' + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + run: | + YEAR=$(date +%Y) + gh pr create \ + --title "Update copyright dates to $YEAR" \ + --body "This PR updates the copyright dates to $YEAR." \ + --base master \ + --head "maintenance/update-copyright-dates-$YEAR" \ + --label "maintenance" diff --git a/abyss/2.0.2-3/Dockerfile b/abyss/2.0.2-3/Dockerfile index 86a01e7..c6bfee2 100755 --- a/abyss/2.0.2-3/Dockerfile +++ b/abyss/2.0.2-3/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/abyss/2.1.0-k.128/Dockerfile b/abyss/2.1.0-k.128/Dockerfile index d2cef0b..a4040a6 100755 --- a/abyss/2.1.0-k.128/Dockerfile +++ b/abyss/2.1.0-k.128/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/abyss/2.1.0-k.256/Dockerfile b/abyss/2.1.0-k.256/Dockerfile index d1c1bb1..50e21b7 100755 --- a/abyss/2.1.0-k.256/Dockerfile +++ b/abyss/2.1.0-k.256/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/abyss/2.1.0/Dockerfile b/abyss/2.1.0/Dockerfile index c4edb03..28e318b 100755 --- a/abyss/2.1.0/Dockerfile +++ b/abyss/2.1.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/adops/0.7.1/Dockerfile b/adops/0.7.1/Dockerfile index 04a4180..093be10 100755 --- a/adops/0.7.1/Dockerfile +++ b/adops/0.7.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/adops/0.7.4/Dockerfile b/adops/0.7.4/Dockerfile index 1395a87..35c1fd7 100644 --- a/adops/0.7.4/Dockerfile +++ b/adops/0.7.4/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/aegean/Dockerfile b/aegean/Dockerfile index 4369a78..768e94b 100644 --- a/aegean/Dockerfile +++ b/aegean/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/afterqc/0.9.7/Dockerfile b/afterqc/0.9.7/Dockerfile index 55f3fc0..22c1dce 100644 --- a/afterqc/0.9.7/Dockerfile +++ b/afterqc/0.9.7/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/alter/1.3.4/Dockerfile b/alter/1.3.4/Dockerfile index 261be4f..d2d747d 100644 --- a/alter/1.3.4/Dockerfile +++ b/alter/1.3.4/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/autoaugustus/2.5.5/Dockerfile b/autoaugustus/2.5.5/Dockerfile index 0d5fe5f..55f1657 100644 --- a/autoaugustus/2.5.5/Dockerfile +++ b/autoaugustus/2.5.5/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/bdbm/1.0.2/Dockerfile b/bdbm/1.0.2/Dockerfile index 43fc4a7..84cf4e6 100644 --- a/bdbm/1.0.2/Dockerfile +++ b/bdbm/1.0.2/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/bedtools/2.27.1/Dockerfile b/bedtools/2.27.1/Dockerfile index 173c362..3f1baf6 100755 --- a/bedtools/2.27.1/Dockerfile +++ b/bedtools/2.27.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/bedtools/2.29.2/Dockerfile b/bedtools/2.29.2/Dockerfile index bee5d80..c77855c 100755 --- a/bedtools/2.29.2/Dockerfile +++ b/bedtools/2.29.2/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/bedtools/2.30.0/Dockerfile b/bedtools/2.30.0/Dockerfile index 0949e5d..8ebe534 100644 --- a/bedtools/2.30.0/Dockerfile +++ b/bedtools/2.30.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/bedtools/2.x/Dockerfile b/bedtools/2.x/Dockerfile index b9b1429..3025de5 100644 --- a/bedtools/2.x/Dockerfile +++ b/bedtools/2.x/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/bioconvert/0.4.3/Dockerfile b/bioconvert/0.4.3/Dockerfile index 600039c..097a16c 100644 --- a/bioconvert/0.4.3/Dockerfile +++ b/bioconvert/0.4.3/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/biopython/1.78/Dockerfile b/biopython/1.78/Dockerfile index 4b0ad60..f11541f 100644 --- a/biopython/1.78/Dockerfile +++ b/biopython/1.78/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/biopython/1.x/Dockerfile b/biopython/1.x/Dockerfile index e858946..19ebf68 100644 --- a/biopython/1.x/Dockerfile +++ b/biopython/1.x/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/biopython_utilities/Dockerfile b/biopython_utilities/Dockerfile index 61e1112..44b2837 100644 --- a/biopython_utilities/Dockerfile +++ b/biopython_utilities/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/blast/2.10.0/Dockerfile b/blast/2.10.0/Dockerfile index 432f645..18ab2ab 100644 --- a/blast/2.10.0/Dockerfile +++ b/blast/2.10.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/blast/2.13.0/Dockerfile b/blast/2.13.0/Dockerfile index 24833ae..6e0a563 100644 --- a/blast/2.13.0/Dockerfile +++ b/blast/2.13.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/blast/2.6.0-1/Dockerfile b/blast/2.6.0-1/Dockerfile index 67d9bd2..2068cb4 100644 --- a/blast/2.6.0-1/Dockerfile +++ b/blast/2.6.0-1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/blast/2.x/Dockerfile b/blast/2.x/Dockerfile index 6250abf..4aa0248 100644 --- a/blast/2.x/Dockerfile +++ b/blast/2.x/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/blast_utilities/Dockerfile b/blast_utilities/Dockerfile index 76782c8..9a168a3 100644 --- a/blast_utilities/Dockerfile +++ b/blast_utilities/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/bowtie1/1.2.3/Dockerfile b/bowtie1/1.2.3/Dockerfile index 6b3f9ea..92e35b0 100644 --- a/bowtie1/1.2.3/Dockerfile +++ b/bowtie1/1.2.3/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/bwa/0.7.17/Dockerfile b/bwa/0.7.17/Dockerfile index 8f8ddaa..71a14aa 100755 --- a/bwa/0.7.17/Dockerfile +++ b/bwa/0.7.17/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/cds2gff3-maker/Dockerfile b/cds2gff3-maker/Dockerfile index a358688..cb63221 100644 --- a/cds2gff3-maker/Dockerfile +++ b/cds2gff3-maker/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/clustalomega/1.2.4/Dockerfile b/clustalomega/1.2.4/Dockerfile index 86201e1..ecd4e54 100755 --- a/clustalomega/1.2.4/Dockerfile +++ b/clustalomega/1.2.4/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/coral/1.4.1/Dockerfile b/coral/1.4.1/Dockerfile index 106f8db..5de59d3 100755 --- a/coral/1.4.1/Dockerfile +++ b/coral/1.4.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/cport_server/Dockerfile b/cport_server/Dockerfile index 94c34e2..1801a35 100644 --- a/cport_server/Dockerfile +++ b/cport_server/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/cutadapt/1.16/Dockerfile b/cutadapt/1.16/Dockerfile index 879f3bb..25a00e0 100755 --- a/cutadapt/1.16/Dockerfile +++ b/cutadapt/1.16/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/diamond/2.x/Dockerfile b/diamond/2.x/Dockerfile index 076ee63..ebcac81 100644 --- a/diamond/2.x/Dockerfile +++ b/diamond/2.x/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/dnasp-v6/Dockerfile b/dnasp-v6/Dockerfile index e07a952..da97782 100644 --- a/dnasp-v6/Dockerfile +++ b/dnasp-v6/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/docker-manager/Dockerfile b/docker-manager/Dockerfile index 4e12f9f..0f4dc8e 100644 --- a/docker-manager/Dockerfile +++ b/docker-manager/Dockerfile @@ -1,5 +1,6 @@ # -# Copyright 2018-2024 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel + # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/docker-manager/v1.1/Dockerfile b/docker-manager/v1.1/Dockerfile index 4e12f9f..0f4dc8e 100644 --- a/docker-manager/v1.1/Dockerfile +++ b/docker-manager/v1.1/Dockerfile @@ -1,5 +1,6 @@ # -# Copyright 2018-2024 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel + # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/docker/18.04/Dockerfile b/docker/18.04/Dockerfile index 4f5a7ad..cf56b71 100644 --- a/docker/18.04/Dockerfile +++ b/docker/18.04/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/docker/20.04/Dockerfile b/docker/20.04/Dockerfile index 63566de..578b2bf 100644 --- a/docker/20.04/Dockerfile +++ b/docker/20.04/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/edena/3.131028/Dockerfile b/edena/3.131028/Dockerfile index 4b41c7f..399c5e0 100755 --- a/edena/3.131028/Dockerfile +++ b/edena/3.131028/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/emboss/6.6.0/Dockerfile b/emboss/6.6.0/Dockerfile index fcdfb74..7da3680 100755 --- a/emboss/6.6.0/Dockerfile +++ b/emboss/6.6.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/entrez-direct/Dockerfile b/entrez-direct/Dockerfile index d1bb9da..fb8018a 100644 --- a/entrez-direct/Dockerfile +++ b/entrez-direct/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/fastqc/0.11.7/Dockerfile b/fastqc/0.11.7/Dockerfile index 7e546ef..5d0e708 100644 --- a/fastqc/0.11.7/Dockerfile +++ b/fastqc/0.11.7/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/fastqc/0.11.9/Dockerfile b/fastqc/0.11.9/Dockerfile index ecd6d21..af96e06 100644 --- a/fastqc/0.11.9/Dockerfile +++ b/fastqc/0.11.9/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/fastqc/0.X/Dockerfile b/fastqc/0.X/Dockerfile index 04834b8..9647477 100644 --- a/fastqc/0.X/Dockerfile +++ b/fastqc/0.X/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/fasttree/2.1.10/Dockerfile b/fasttree/2.1.10/Dockerfile index 5baed2d..ff765f6 100755 --- a/fasttree/2.1.10/Dockerfile +++ b/fasttree/2.1.10/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/feature-counts/2.0.0/Dockerfile b/feature-counts/2.0.0/Dockerfile index 4ddba98..6a2af88 100644 --- a/feature-counts/2.0.0/Dockerfile +++ b/feature-counts/2.0.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/figtree/1.4.4/Dockerfile b/figtree/1.4.4/Dockerfile index cf01893..a4309b7 100644 --- a/figtree/1.4.4/Dockerfile +++ b/figtree/1.4.4/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/flash/1.2.11/Dockerfile b/flash/1.2.11/Dockerfile index 8154921..5898b19 100755 --- a/flash/1.2.11/Dockerfile +++ b/flash/1.2.11/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/format_auto-pss-genome/Dockerfile b/format_auto-pss-genome/Dockerfile index 9911e7e..8b3116b 100644 --- a/format_auto-pss-genome/Dockerfile +++ b/format_auto-pss-genome/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/formfind/Dockerfile b/formfind/Dockerfile index a11be28..be6954f 100644 --- a/formfind/Dockerfile +++ b/formfind/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/gatk/3/3.8-0/Dockerfile b/gatk/3/3.8-0/Dockerfile index 6771ad3..1e89809 100644 --- a/gatk/3/3.8-0/Dockerfile +++ b/gatk/3/3.8-0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/gatk/4/4.1.4.1/Dockerfile b/gatk/4/4.1.4.1/Dockerfile index 5f95d44..a9fd3cc 100644 --- a/gatk/4/4.1.4.1/Dockerfile +++ b/gatk/4/4.1.4.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/gbif_gis/Dockerfile b/gbif_gis/Dockerfile index 340a2ba..712ad80 100755 --- a/gbif_gis/Dockerfile +++ b/gbif_gis/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/gis/Dockerfile b/gis/Dockerfile index 41be082..03aa9cc 100755 --- a/gis/Dockerfile +++ b/gis/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/gmap-gsnap/2021.03.08/Dockerfile b/gmap-gsnap/2021.03.08/Dockerfile index 017209c..0305f10 100644 --- a/gmap-gsnap/2021.03.08/Dockerfile +++ b/gmap-gsnap/2021.03.08/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/goalign/Dockerfile b/goalign/Dockerfile index 2689f33..7802f57 100644 --- a/goalign/Dockerfile +++ b/goalign/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/gotree/0.4.2/Dockerfile b/gotree/0.4.2/Dockerfile index 5124cbc..7931f69 100644 --- a/gotree/0.4.2/Dockerfile +++ b/gotree/0.4.2/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/haddock-tools/Dockerfile b/haddock-tools/Dockerfile index 4d368de..3603c28 100644 --- a/haddock-tools/Dockerfile +++ b/haddock-tools/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/haddock24-builder/Dockerfile b/haddock24-builder/Dockerfile index 34177bf..9535315 100644 --- a/haddock24-builder/Dockerfile +++ b/haddock24-builder/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/haddock_server/2.2/Dockerfile b/haddock_server/2.2/Dockerfile index a1817c2..d8a951c 100644 --- a/haddock_server/2.2/Dockerfile +++ b/haddock_server/2.2/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/hdock-builder/1.1/Dockerfile b/hdock-builder/1.1/Dockerfile index 16648fb..b2c59b9 100644 --- a/hdock-builder/1.1/Dockerfile +++ b/hdock-builder/1.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/human_prot_atlas/Dockerfile b/human_prot_atlas/Dockerfile index 4bfbb8c..2ec03f1 100644 --- a/human_prot_atlas/Dockerfile +++ b/human_prot_atlas/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/hyphy/2.3.14/Dockerfile b/hyphy/2.3.14/Dockerfile index 8e51dae..031a60d 100644 --- a/hyphy/2.3.14/Dockerfile +++ b/hyphy/2.3.14/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/i-tasser_server/Dockerfile b/i-tasser_server/Dockerfile index 731d1f4..ea6772d 100644 --- a/i-tasser_server/Dockerfile +++ b/i-tasser_server/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/id_mapping/Dockerfile b/id_mapping/Dockerfile index 4f4cfa9..57e795d 100644 --- a/id_mapping/Dockerfile +++ b/id_mapping/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/igv/2.13.0/Dockerfile b/igv/2.13.0/Dockerfile index ef8411a..b224403 100755 --- a/igv/2.13.0/Dockerfile +++ b/igv/2.13.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/jmodeltest2/2.1.10/Dockerfile b/jmodeltest2/2.1.10/Dockerfile index d328646..f1796b8 100644 --- a/jmodeltest2/2.1.10/Dockerfile +++ b/jmodeltest2/2.1.10/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/kakscalculator/2.0/Dockerfile b/kakscalculator/2.0/Dockerfile index 24a6441..894ed3e 100644 --- a/kakscalculator/2.0/Dockerfile +++ b/kakscalculator/2.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/lsd/Dockerfile b/lsd/Dockerfile index cd6f84c..67315ea 100644 --- a/lsd/Dockerfile +++ b/lsd/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/lsd/resources/lsd-base/Dockerfile b/lsd/resources/lsd-base/Dockerfile index a608c18..f961627 100644 --- a/lsd/resources/lsd-base/Dockerfile +++ b/lsd/resources/lsd-base/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/mauve/2.4.0/Dockerfile b/mauve/2.4.0/Dockerfile index 6a35ed1..db79f37 100644 --- a/mauve/2.4.0/Dockerfile +++ b/mauve/2.4.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/maxbin2/2.2.4/Dockerfile b/maxbin2/2.2.4/Dockerfile index 5487607..4ccaebf 100644 --- a/maxbin2/2.2.4/Dockerfile +++ b/maxbin2/2.2.4/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/megax/10.0.5/Dockerfile b/megax/10.0.5/Dockerfile index 09fa910..f3cb8ff 100644 --- a/megax/10.0.5/Dockerfile +++ b/megax/10.0.5/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/megax_cc/10.0.5/Dockerfile b/megax_cc/10.0.5/Dockerfile index c9946df..f8617a4 100644 --- a/megax_cc/10.0.5/Dockerfile +++ b/megax_cc/10.0.5/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/metaeuk/Dockerfile b/metaeuk/Dockerfile index f834c83..c678fb4 100644 --- a/metaeuk/Dockerfile +++ b/metaeuk/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/mrbayes/3.2.6/Dockerfile b/mrbayes/3.2.6/Dockerfile index fbd4944..69d4858 100644 --- a/mrbayes/3.2.6/Dockerfile +++ b/mrbayes/3.2.6/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/multiqc/1.14.0/Dockerfile b/multiqc/1.14.0/Dockerfile index d5e82a5..4c2f90a 100644 --- a/multiqc/1.14.0/Dockerfile +++ b/multiqc/1.14.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/ncbi-datasets/1.x/Dockerfile b/ncbi-datasets/1.x/Dockerfile index 6552ae8..d74489e 100644 --- a/ncbi-datasets/1.x/Dockerfile +++ b/ncbi-datasets/1.x/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2024 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/ncbi_retrieve/1.0.0/Dockerfile b/ncbi_retrieve/1.0.0/Dockerfile index 2f60b7a..7f150bb 100644 --- a/ncbi_retrieve/1.0.0/Dockerfile +++ b/ncbi_retrieve/1.0.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/ncbi_retrieve/1.0.1/Dockerfile b/ncbi_retrieve/1.0.1/Dockerfile index 2f60b7a..7f150bb 100644 --- a/ncbi_retrieve/1.0.1/Dockerfile +++ b/ncbi_retrieve/1.0.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/omegamap/latest/Dockerfile b/omegamap/latest/Dockerfile index 421aa91..af095b0 100755 --- a/omegamap/latest/Dockerfile +++ b/omegamap/latest/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/paml/4.9h/Dockerfile b/paml/4.9h/Dockerfile index 4561578..a60fe36 100644 --- a/paml/4.9h/Dockerfile +++ b/paml/4.9h/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/paml/4.9j/Dockerfile b/paml/4.9j/Dockerfile index 7e0fb22..a57827c 100644 --- a/paml/4.9j/Dockerfile +++ b/paml/4.9j/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pathvisio/3.3.0/Dockerfile b/pathvisio/3.3.0/Dockerfile index 4b4c15a..cdbbe8b 100755 --- a/pathvisio/3.3.0/Dockerfile +++ b/pathvisio/3.3.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pdb-tools/2.4.1/Dockerfile b/pdb-tools/2.4.1/Dockerfile index b9c59c3..641f052 100644 --- a/pdb-tools/2.4.1/Dockerfile +++ b/pdb-tools/2.4.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/phipack/Dockerfile b/phipack/Dockerfile index 9d39d64..1cf1f44 100644 --- a/phipack/Dockerfile +++ b/phipack/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/picard/2.21.5/Dockerfile b/picard/2.21.5/Dockerfile index 722fffb..144b543 100644 --- a/picard/2.21.5/Dockerfile +++ b/picard/2.21.5/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pilzerd/Dockerfile b/pilzerd/Dockerfile index 4ce9151..e568ff5 100755 --- a/pilzerd/Dockerfile +++ b/pilzerd/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/plasflow/1.1.0/Dockerfile b/plasflow/1.1.0/Dockerfile index 996feff..d057382 100644 --- a/plasflow/1.1.0/Dockerfile +++ b/plasflow/1.1.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/plottree/0.0.2/Dockerfile b/plottree/0.0.2/Dockerfile index ac6e9f3..137b1b1 100644 --- a/plottree/0.0.2/Dockerfile +++ b/plottree/0.0.2/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/popart/1.7/Dockerfile b/popart/1.7/Dockerfile index 25a2d92..5722c54 100644 --- a/popart/1.7/Dockerfile +++ b/popart/1.7/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/prokka/1.14.6/Dockerfile b/prokka/1.14.6/Dockerfile index 5dd9f5f..0dad2b0 100644 --- a/prokka/1.14.6/Dockerfile +++ b/prokka/1.14.6/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/prosplign-procompart/Dockerfile b/prosplign-procompart/Dockerfile index af5b886..2dca14a 100644 --- a/prosplign-procompart/Dockerfile +++ b/prosplign-procompart/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pss-3d/Dockerfile b/pss-3d/Dockerfile index dd93be0..de070f8 100644 --- a/pss-3d/Dockerfile +++ b/pss-3d/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pymol/1.8.4.0/Dockerfile b/pymol/1.8.4.0/Dockerfile index 406a1bf..4d7823a 100644 --- a/pymol/1.8.4.0/Dockerfile +++ b/pymol/1.8.4.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pymol/2.3.0/Dockerfile b/pymol/2.3.0/Dockerfile index 0384287..3749840 100644 --- a/pymol/2.3.0/Dockerfile +++ b/pymol/2.3.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/qualimap/2.2.1/Dockerfile b/qualimap/2.2.1/Dockerfile index 8040ec2..f5ed357 100755 --- a/qualimap/2.2.1/Dockerfile +++ b/qualimap/2.2.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_builder/Dockerfile b/r_builder/Dockerfile index 8165f66..b62fce1 100644 --- a/r_builder/Dockerfile +++ b/r_builder/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2024 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_data-analysis/4.1.1/Dockerfile b/r_data-analysis/4.1.1/Dockerfile index f5add4b..b08cd2b 100644 --- a/r_data-analysis/4.1.1/Dockerfile +++ b/r_data-analysis/4.1.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_deseq2/1.32.0/Dockerfile b/r_deseq2/1.32.0/Dockerfile index 9eeb1c9..2de97dd 100644 --- a/r_deseq2/1.32.0/Dockerfile +++ b/r_deseq2/1.32.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_edger/3.36.0/Dockerfile b/r_edger/3.36.0/Dockerfile index 80fa759..f178ac3 100644 --- a/r_edger/3.36.0/Dockerfile +++ b/r_edger/3.36.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_edger/4.0.16/Dockerfile b/r_edger/4.0.16/Dockerfile index 506ca50..12cab47 100644 --- a/r_edger/4.0.16/Dockerfile +++ b/r_edger/4.0.16/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_enhanced-volcano/1.12.0/Dockerfile b/r_enhanced-volcano/1.12.0/Dockerfile index 6eb580d..19fc5f6 100644 --- a/r_enhanced-volcano/1.12.0/Dockerfile +++ b/r_enhanced-volcano/1.12.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_network/Dockerfile b/r_network/Dockerfile index b034085..99b6fbd 100644 --- a/r_network/Dockerfile +++ b/r_network/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_project/3.6.0/Dockerfile b/r_project/3.6.0/Dockerfile index e400811..55394da 100755 --- a/r_project/3.6.0/Dockerfile +++ b/r_project/3.6.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_project/4.1.1/Dockerfile b/r_project/4.1.1/Dockerfile index 4ae1c4c..8cf0387 100644 --- a/r_project/4.1.1/Dockerfile +++ b/r_project/4.1.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_project/4.3.3/Dockerfile b/r_project/4.3.3/Dockerfile index 4ae1c4c..8cf0387 100644 --- a/r_project/4.3.3/Dockerfile +++ b/r_project/4.3.3/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_sva/3.54.0/Dockerfile b/r_sva/3.54.0/Dockerfile index 39407f2..aeb85f2 100644 --- a/r_sva/3.54.0/Dockerfile +++ b/r_sva/3.54.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2024 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/r_venn-diagram/1.7.0/Dockerfile b/r_venn-diagram/1.7.0/Dockerfile index ac66186..8fd3083 100644 --- a/r_venn-diagram/1.7.0/Dockerfile +++ b/r_venn-diagram/1.7.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/raxml/8.2.12/Dockerfile b/raxml/8.2.12/Dockerfile index 0fe15ed..9597238 100644 --- a/raxml/8.2.12/Dockerfile +++ b/raxml/8.2.12/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/recombine/Dockerfile b/recombine/Dockerfile index a8cec33..a354a37 100644 --- a/recombine/Dockerfile +++ b/recombine/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/repeat_masker/4.0.9/Dockerfile b/repeat_masker/4.0.9/Dockerfile index 1d05f47..c8aa8bc 100644 --- a/repeat_masker/4.0.9/Dockerfile +++ b/repeat_masker/4.0.9/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/roary/3.6.0/Dockerfile b/roary/3.6.0/Dockerfile index fc9d12a..5fd1aad 100644 --- a/roary/3.6.0/Dockerfile +++ b/roary/3.6.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/rootdigger/Dockerfile b/rootdigger/Dockerfile index 8773f66..dc09fac 100644 --- a/rootdigger/Dockerfile +++ b/rootdigger/Dockerfile @@ -1,5 +1,6 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel + # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/samtools_bcftools/1.10/Dockerfile b/samtools_bcftools/1.10/Dockerfile index d94e774..d706dcb 100644 --- a/samtools_bcftools/1.10/Dockerfile +++ b/samtools_bcftools/1.10/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/samtools_bcftools/1.9/Dockerfile b/samtools_bcftools/1.9/Dockerfile index 1f0b94b..75a1b61 100755 --- a/samtools_bcftools/1.9/Dockerfile +++ b/samtools_bcftools/1.9/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/sapp/dev/Dockerfile b/sapp/dev/Dockerfile index 5d5f0e5..461df8a 100644 --- a/sapp/dev/Dockerfile +++ b/sapp/dev/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/sapp/stable/Dockerfile b/sapp/stable/Dockerfile index 901da89..77317be 100644 --- a/sapp/stable/Dockerfile +++ b/sapp/stable/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scipio/Dockerfile b/scipio/Dockerfile index a207e2d..a7a7041 100644 --- a/scipio/Dockerfile +++ b/scipio/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/seqkit/0.11.0/Dockerfile b/seqkit/0.11.0/Dockerfile index 62c8698..3716ae2 100644 --- a/seqkit/0.11.0/Dockerfile +++ b/seqkit/0.11.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/seqkit/0.12.0/Dockerfile b/seqkit/0.12.0/Dockerfile index e9c7957..2fa7ecb 100644 --- a/seqkit/0.12.0/Dockerfile +++ b/seqkit/0.12.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/seqkit/0.12.1/Dockerfile b/seqkit/0.12.1/Dockerfile index 37a8464..6357b7e 100644 --- a/seqkit/0.12.1/Dockerfile +++ b/seqkit/0.12.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/seqkit/0.16.1/Dockerfile b/seqkit/0.16.1/Dockerfile index bab088d..2f7a289 100644 --- a/seqkit/0.16.1/Dockerfile +++ b/seqkit/0.16.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/seqkit/2.x/Dockerfile b/seqkit/2.x/Dockerfile index 31dda1e..8ca91dd 100644 --- a/seqkit/2.x/Dockerfile +++ b/seqkit/2.x/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/seqtk/1.x/Dockerfile b/seqtk/1.x/Dockerfile index 45dbe3e..a970276 100644 --- a/seqtk/1.x/Dockerfile +++ b/seqtk/1.x/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2023 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/soapdenovo2/2.04/Dockerfile b/soapdenovo2/2.04/Dockerfile index 8828029..05affa6 100755 --- a/soapdenovo2/2.04/Dockerfile +++ b/soapdenovo2/2.04/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/spades/3.11.1/Dockerfile b/spades/3.11.1/Dockerfile index 6e853c7..5514dc3 100755 --- a/spades/3.11.1/Dockerfile +++ b/spades/3.11.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/splign-compart/Dockerfile b/splign-compart/Dockerfile index 6333283..1c2dc3b 100644 --- a/splign-compart/Dockerfile +++ b/splign-compart/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/splitstree/4.14.8/Dockerfile b/splitstree/4.14.8/Dockerfile index bf8e358..688e4aa 100755 --- a/splitstree/4.14.8/Dockerfile +++ b/splitstree/4.14.8/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/sppider/Dockerfile b/sppider/Dockerfile index 4d749cf..d92871a 100644 --- a/sppider/Dockerfile +++ b/sppider/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/sratoolkit/2.10.0/Dockerfile b/sratoolkit/2.10.0/Dockerfile index 62872e9..2d19bf6 100644 --- a/sratoolkit/2.10.0/Dockerfile +++ b/sratoolkit/2.10.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/sratoolkit/2.9.0/Dockerfile b/sratoolkit/2.9.0/Dockerfile index f3f50f3..bd20976 100755 --- a/sratoolkit/2.9.0/Dockerfile +++ b/sratoolkit/2.9.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/sratoolkit/2.9.6/Dockerfile b/sratoolkit/2.9.6/Dockerfile index 846b294..7b33f81 100644 --- a/sratoolkit/2.9.6/Dockerfile +++ b/sratoolkit/2.9.6/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/sratoolkit/3.x/Dockerfile b/sratoolkit/3.x/Dockerfile index 6744f77..61b6837 100644 --- a/sratoolkit/3.x/Dockerfile +++ b/sratoolkit/3.x/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/takeabreak/1.2.0/Dockerfile b/takeabreak/1.2.0/Dockerfile index bae314e..51d3ac7 100755 --- a/takeabreak/1.2.0/Dockerfile +++ b/takeabreak/1.2.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/taxodros_gis/Dockerfile b/taxodros_gis/Dockerfile index 5330ece..dd1493b 100755 --- a/taxodros_gis/Dockerfile +++ b/taxodros_gis/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/tcoffee/11.00.8/Dockerfile b/tcoffee/11.00.8/Dockerfile index 71fb356..8f008a0 100644 --- a/tcoffee/11.00.8/Dockerfile +++ b/tcoffee/11.00.8/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/tcoffee/12.00.7/Dockerfile b/tcoffee/12.00.7/Dockerfile index d9d1e0e..1abbe19 100644 --- a/tcoffee/12.00.7/Dockerfile +++ b/tcoffee/12.00.7/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/tm-align_server/Dockerfile b/tm-align_server/Dockerfile index b8a5523..cbd75be 100644 --- a/tm-align_server/Dockerfile +++ b/tm-align_server/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/translatorx/Dockerfile b/translatorx/Dockerfile index b0e7447..5c07bf9 100644 --- a/translatorx/Dockerfile +++ b/translatorx/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/treeviewx/0.5.1/Dockerfile b/treeviewx/0.5.1/Dockerfile index f274bcf..447cbce 100644 --- a/treeviewx/0.5.1/Dockerfile +++ b/treeviewx/0.5.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/trinity/2.11.0/Dockerfile b/trinity/2.11.0/Dockerfile index 544623d..4c07ce5 100644 --- a/trinity/2.11.0/Dockerfile +++ b/trinity/2.11.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/utilities/Dockerfile b/utilities/Dockerfile index 7326b82..83ff3ee 100755 --- a/utilities/Dockerfile +++ b/utilities/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/values2tree/Dockerfile b/values2tree/Dockerfile index 3da2351..032995f 100644 --- a/values2tree/Dockerfile +++ b/values2tree/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2022 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/vcftools/0.1.16/Dockerfile b/vcftools/0.1.16/Dockerfile index 2388ca1..7f6c27b 100644 --- a/vcftools/0.1.16/Dockerfile +++ b/vcftools/0.1.16/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/velvet/1.1/Dockerfile b/velvet/1.1/Dockerfile index d33d9ce..d5c9623 100644 --- a/velvet/1.1/Dockerfile +++ b/velvet/1.1/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/wgsim/0.3.0/Dockerfile b/wgsim/0.3.0/Dockerfile index 545721d..f81c6d2 100644 --- a/wgsim/0.3.0/Dockerfile +++ b/wgsim/0.3.0/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/whiscy/Dockerfile b/whiscy/Dockerfile index 9563964..1bc88fb 100755 --- a/whiscy/Dockerfile +++ b/whiscy/Dockerfile @@ -1,5 +1,5 @@ # -# Copyright 2018-2021 Hugo López-Fernández, Pedro M. Ferreira, Miguel +# Copyright 2018-2025 Hugo López-Fernández, Pedro M. Ferreira, Miguel # Reboiro-Jato, Cristina P. Vieira, and Jorge Vieira # # Licensed under the Apache License, Version 2.0 (the "License");