-
Notifications
You must be signed in to change notification settings - Fork 2
Expand file tree
/
Copy pathconfig-i2b2.ps1
More file actions
105 lines (88 loc) · 3.19 KB
/
config-i2b2.ps1
File metadata and controls
105 lines (88 loc) · 3.19 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
#JBOSS Configuration
$JBOSS_ADDRESS = "0.0.0.0"
$JBOSS_PORT = "9090"
$JBOSS_ADMIN = "jbossAdmin"
$JBOSS_PASS = "jbossP@ss"
#Logging
$Logging = $false
#i2b2 domain config
$I2B2_DOMAIN="i2b2demo"
$I2B2_HIVE_NAME="Local Demo"
$I2B2_PROJECT_NAME="demo"
#Location of the i2b2 web services
$DEFAULT_I2B2_SERVER = "localhost" #localhost\sqlexpress
$DEFAULT_I2B2_SERVICE_URL="http://" + $DEFAULT_I2B2_SERVER + ":" + $JBOSS_PORT + "/i2b2/services"
$PM_SERVICE_URL="$DEFAULT_I2B2_SERVICE_URL/PMService"
$CRC_SERVICE_URL="$DEFAULT_I2B2_SERVICE_URL/QueryToolService"
$FR_SERVICE_URL="$DEFAULT_I2B2_SERVICE_URL/FRService"
$ONT_SERVICE_URL="$DEFAULT_I2B2_SERVICE_URL/OntologyService"
#Service account used by i2b2 software
$I2B2_SERVICEACCOUNT_USER="AGG_SERVICE_ACCOUNT"
$I2B2_SERVICEACCOUNT_PASS="demouser"
#Database configuration
$DEFAULT_DB_SERVER="localhost"
#THESE ARE USED TO CREATE DATABASES, NEEDS TO HAVE ADMIN ACCESS TO DB SERVER
$DEFAULT_DB_ADMIN_USER="admin" #<== THIS IS NOT SET
$DEFAULT_DB_ADMIN_PASS="password" #<== THIS IS NOT SET
$DEFAULT_DB_URL="jdbc:sqlserver://localhost:1433" #instanceName=sqlexpress #+ $DEFAULT_DB_SERVER #If NOT using SQLEXPRESS need to include the port number: + ":1433"
$DEFAULT_DB_DRIVER="com.microsoft.sqlserver.jdbc.SQLServerDriver"
$DEFAULT_DB_JAR_FILE="sqljdbc4.jar"
$DEFAULT_DB_TYPE="SQLServer"
$DEFAULT_DB_PASS="demouser"
$DEFAULT_DB_SCHEMA="dbo"
#Cell configuration
$HIVE_DB_NAME="i2b2hive"
$HIVE_DB_DRIVER=$DEFAULT_DB_DRIVER
$HIVE_DB_JAR_FILE=$DEFAULT_DB_JAR_FILE
$HIVE_DB_URL=$DEFAULT_DB_URL
$HIVE_DB_SCHEMA="$HIVE_DB_NAME.$DEFAULT_DB_SCHEMA"
$HIVE_DB_USER=$HIVE_DB_NAME
$HIVE_DB_PASS=$DEFAULT_DB_PASS
$PM_DB_NAME="i2b2pm"
$PM_DB_DRIVER=$DEFAULT_DB_DRIVER
$PM_DB_JAR_FILE=$DEFAULT_DB_JAR_FILE
$PM_DB_URL=$DEFAULT_DB_URL
$PM_DB_SCHEMA="$PM_DB_NAME.$DEFAULT_DB_SCHEMA"
$PM_DB_USER=$PM_DB_NAME
$PM_DB_PASS=$DEFAULT_DB_PASS
$ONT_DB_NAME="i2b2metadata"
$ONT_DB_DRIVER=$DEFAULT_DB_DRIVER
$ONT_DB_JAR_FILE=$DEFAULT_DB_JAR_FILE
$ONT_DB_URL=$DEFAULT_DB_URL
$ONT_DB_SCHEMA="$ONT_DB_NAME.$DEFAULT_DB_SCHEMA"
$ONT_DB_USER=$ONT_DB_NAME
$ONT_DB_PASS=$DEFAULT_DB_PASS
$ONT_DB_DATASOURCE="OntologyDemoDS"
$CRC_DB_NAME="i2b2demodata"
$CRC_DB_DRIVER=$DEFAULT_DB_DRIVER
$CRC_DB_JAR_FILE=$DEFAULT_DB_JAR_FILE
$CRC_DB_URL=$DEFAULT_DB_URL
$CRC_DB_SCHEMA="$CRC_DB_NAME.$DEFAULT_DB_SCHEMA"
$CRC_DB_USER=$CRC_DB_NAME
$CRC_DB_PASS=$DEFAULT_DB_PASS
$CRC_DB_DATASOURCE="QueryToolDS"
$WORK_DB_NAME="i2b2workdata"
$WORK_DB_DRIVER=$DEFAULT_DB_DRIVER
$WORK_DB_JAR_FILE=$DEFAULT_DB_JAR_FILE
$WORK_DB_URL=$DEFAULT_DB_URL
$WORK_DB_SCHEMA="$WORK_DB_NAME.$DEFAULT_DB_SCHEMA"
$WORK_DB_USER=$WORK_DB_NAME
$WORK_DB_PASS=$DEFAULT_DB_PASS
$IM_DB_NAME="i2b2imdata"
$IM_DB_DRIVER=$DEFAULT_DB_DRIVER
$IM_DB_JAR_FILE=$DEFAULT_DB_JAR_FILE
$IM_DB_URL=$DEFAULT_DB_URL
$IM_DB_SCHEMA="$IM_DB_NAME.$DEFAULT_DB_SCHEMA"
$IM_DB_USER=$IM_DB_NAME
$IM_DB_PASS=$DEFAULT_DB_PASS
#Shrine Cell Configuration
$SHRINE_DB_NAME="shrine_query_history"
$SHRINE_DB_DRIVER=$DEFAULT_DB_DRIVER
$SHRINE_DB_JAR_FILE=$DEFAULT_DB_JAR_FILE
$SHRINE_DB_URL=$DEFAULT_DB_URL
$SHRINE_DB_SCHEMA="$SHRINE_DB_NAME.$DEFAULT_DB_SCHEMA"
$SHRINE_DB_USER="shrine"
$SHRINE_DB_PASS=$DEFAULT_DB_PASS
$SHRINE_DB_PROJECT="SHRINE"
$SHRINE_DB_DATASOURCE="ShrineOntologyDS"
$SHRINE_DB_NICENAME="Shrine"