use relative links

Author: markgeejw

source/walkthroughs/Protein_protein_binder_design_with_RFdiffusion.ipynb

@@ -41,9 +41,9 @@
     "- `openprotein_python>=0.10`\n",
     "- `molviewspec` (for structure visualization)\n",
     "\n",
-    "See the Python client [installation instructions](https://docs.openprotein.ai/python-api/installation.html) for more info.\n",
+    "See the Python client [installation instructions](../python-api/installation.html) for more info.\n",
     "\n",
-    "Additionally, you should have your [credentials set up](https:/docs.openprotein.ai/python-api/quickstart.html) in `~/.openprotein/config.toml` to authenticate with the OpenProtein.AI\n",
+    "Additionally, you should have your [credentials set up](../python-api/quickstart.html) in `~/.openprotein/config.toml` to authenticate with the OpenProtein.AI\n",
     "API."
    ]
   },
@@ -2099,18 +2099,18 @@
     "1. Expressed and purified for experimental validation\n",
     "2. Tested for binding affinity\n",
     "3. Further optimized through additional rounds of design, for example, with\n",
-    "   [OpenProtein.AI's property regression models](https://docs.openprotein.ai/python-api/property-regression-models/index.html).\n",
+    "   [OpenProtein.AI's property regression models](../python-api/property-regression-models/index.html).\n",
     "\n",
     "### Other resources\n",
     "\n",
     "Read more about our binder design workflows and other de novo design tools here:\n",
-    "- [Designing de novo nanobody binders with BoltzGen and ProteinMPNN](https://docs.openprotein.ai/walkthroughs/Nanobody_binder_design_with_BoltzGen.html)\n",
-    "- [Inverse folding for protein redesign](https://docs.openprotein.ai/walkthroughs/PoET-2_inverse_folding.html)\n",
+    "- [Designing de novo nanobody binders with BoltzGen and ProteinMPNN](./Nanobody_binder_design_with_BoltzGen.ipynb)\n",
+    "- [Inverse folding for protein redesign](./PoET-2_inverse_folding.ipynb)\n",
     "\n",
     "or see the detailed API references\n",
-    "- [RFdiffusion](https://docs.openprotein.ai/python-api/api-reference/models.html#rfdiffusion)\n",
-    "- [ProteinMPNN](https://docs.openprotein.ai/python-api/api-reference/models.html#proteinmpnn)\n",
-    "- [Boltz-2](https://docs.openprotein.ai/python-api/api-reference/fold.html#openprotein.fold.Boltz2Model)"
+    "- [RFdiffusion](../python-api/api-reference/models.html#rfdiffusion)\n",
+    "- [ProteinMPNN](../python-api/api-reference/models.html#proteinmpnn)\n",
+    "- [Boltz-2](../python-api/api-reference/fold.html#openprotein.fold.Boltz2Model)"
    ]
   }
  ],