From 27453983700984316bfce15cd944ab580bebc87d Mon Sep 17 00:00:00 2001 From: chreman Date: Tue, 2 Dec 2025 13:47:56 +0100 Subject: [PATCH 01/11] env cleanup --- .docker.test.env | 26 -------------------------- .gitignore | 1 + server/workers/tests/README.md | 2 ++ 3 files changed, 3 insertions(+), 26 deletions(-) delete mode 100644 .docker.test.env diff --git a/.docker.test.env b/.docker.test.env deleted file mode 100644 index c6fb25bec..000000000 --- a/.docker.test.env +++ /dev/null @@ -1,26 +0,0 @@ -# APP -FLASK_ENV=development -BEHIND_PROXY=False -SERVICE_VERSION=7d60186f594d420f82901f0514eb3c7e6b6e62d5 -LOGLEVEL=DEBUG -LOGFILE="/var/log/headstart/headstart.log" - -# DB -POSTGRES_USER=testuser -POSTGRES_PASSWORD=postgres -POSTGRES_HOST=db_server -POSTGRES_PORT=5434 -POSTGRES_DATABASE=testdb - -# REDIS -REDIS_HOST=redis-1 -REDIS_PORT=6355 -REDIS_PASSWORD=testredispassword -REDIS_DB=0 - -# R -R_BASE_APIKEY=5812aa4367eb1dc3d366d99fdaaef0e3 - -# ORCID -ORCID_CLIENT_ID="APP-DL8ZAR72EZWW15NX" -ORCID_CLIENT_SECRET="a3389b1a-19c0-4f78-857a-4aba19f5fa46" \ No newline at end of file diff --git a/.gitignore b/.gitignore index c9fbeab53..87d9aa519 100644 --- a/.gitignore +++ b/.gitignore @@ -33,6 +33,7 @@ server/workers/tests/testutils/ local_dev/renv/* local_dev/dev.env local_dev/paper_preview +.docker.test.env # php files /server/classes/headstart/vendor diff --git a/server/workers/tests/README.md b/server/workers/tests/README.md index 73d1ef340..4f80d964c 100644 --- a/server/workers/tests/README.md +++ b/server/workers/tests/README.md @@ -69,6 +69,8 @@ listen_addresses = 'localhost,headstart_db_1,headstart-db-1' Run tests +Create a `.docker.test.env` file first, then run the following command: + ``` docker compose -f docker-compose-integration-tests.yml --env-file .docker.test.env run integration_tests ``` From 91a5159df653d6a5e35e7774763a11ff34b8b213 Mon Sep 17 00:00:00 2001 From: chreman Date: Tue, 2 Dec 2025 14:09:12 +0100 Subject: [PATCH 02/11] workaround draft --- .../9d4dc6b920d1e2cc08a741f7c56821db.json | 1 + local_dev/tools/insert_visualization.py | 26 +++++++++++++++++++ 2 files changed, 27 insertions(+) create mode 100644 local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json create mode 100644 local_dev/tools/insert_visualization.py diff --git a/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json b/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json new file mode 100644 index 000000000..dec7074f7 --- /dev/null +++ b/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json @@ -0,0 +1 @@ +{"context":{"id":"9d4dc6b920d1e2cc08a741f7c56821db","query":"DP0878177","service":"openaire","timestamp":"Tue, 25 Feb 2025 21:20:07 GMT","params":"{\"project_id\":\"DP0878177\",\"funder\":\"ARC\",\"acronym\":\"\",\"title\":\"Understanding the impact of global environmental change on Australian forests and woodlands using rainforest boundaries and Callitris growth as bio-indicators\",\"start_date\":\"2008-01-01\",\"end_date\":\"2011-12-31\",\"special_clause\":\"false\",\"oa_mandate\":\"false\",\"organisations\":[],\"openaire_link\":\"http:\\/\\/purl.org\\/au-research\\/grants\\/arc\\/DP0878177\",\"obj_id\":\"arc_________::fe52f7d04f4139c2c80b4144c294f12d\",\"call_id\":\"\",\"funding_tree\":[null,null,\"Discovery Projects\"]}"},"data":"[{\"id\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"subject\":\"13. Climate action\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"European Geosciences Union\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"fulltext\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"paper_abstract\":\"The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121.\",\"doi\":\"\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Wagner, FH; H\\u00e9rault, B; Bonal, D; Stahl, C; Anderson, LO; Baker, TR; Sebastian Becker, G; Beeckman, H; Boanerges Souza, D; Cesar Botosso, P; Bowman, DMJS; Br\\u00e4uning, A; Brede, B; Irving Brown, F; Julio Camarero, J; Camargo, PB; Cardoso, FCG; Carvalho, FA; Castro, W; Koloski Chagas, R; Chave, J; Chidumayo, EN; Clark, DA; Regina Capellotto Costa, F; Couralet, C; Henrique Da Silva Mauricio, P; Dalitz, H; Resende De Castro, V; Milani, JEDF; Consuelo De Oliveira, E; De Souza Arruda, L; Devineau, JL; Drew, DM; D\\u00fcnisch, O; Durigan, G; Elifuraha, E; Fedele, M; Ferreira Fedele, L; Figueiredo Filho, A; Finger, CAG; C\\u00e9sar Franco, A; Jnior, LF; Galv\\u00e3o, F; Gebrekirstos, A; Gliniars, R; Maur\\u00edcio Lima De Alencastro Gra\\u00e7a, P; Griffiths, AD; Grogan, J; Guan, K; Homeier, J; Raquel Kanieski, M; Khoon Kho, L; Koenig, J; Valerio Kohler, S; Krepkowski, J; Lemos-Filho, JP; Lieberman, D; Eugene Lieberman, M; Sergio Lisi, C; Longhi Santos, T; Ayala, JLL; Eijji Maeda, E; Malhi, Y; Maria, VRB; Marques, MCM; Marques, R; Maza Chamba, H; Mbwambo, L; Liana Lisboa Melga\\u00e7o, K; Angela Mendivelso, H; Murphy, BP; O'Brien, JJ; F Oberbauer, S; Okada, N; Plissier, R; Prior, LD; Alejandro Roig, F; Ross, M; Rodrigo Rossatto, D; Rossi, V; Rowland, L; Rutishauser, E; Santana, H; Schulze, M; Selhorst, D; Rodrigues Silva, W; Silveira, M; Spannl, S; Swaine, MD; Toledo, JJ; Miranda Toledo, M; Toledo, M; Toma, T\",\"subject_orig\":\"13. Climate action\",\"oa_state\":1,\"url\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.395896433436244\",\"y\":\"0.169597229793406\",\"labels\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"subject\":\"0106 biological sciences\",\"title\":\"Plant Traits Demonstrate That Temperate and Tropical Giant Eucalypt Forests Are Ecologically Convergent with Rainforest Not Savanna\",\"year\":\"2013-12-17\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0084378\",\"fulltext\":\"\",\"paper_abstract\":\"Ecological theory differentiates rainforest and open vegetation in many regions as functionally divergent alternative stable states with transitional (ecotonal) vegetation between the two forming transient unstable states. This transitional vegetation is of considerable significance, not only as a test case for theories of vegetation dynamics, but also because this type of vegetation is of major economic importance, and is home to a suite of species of conservation significance, including the world's tallest flowering plants. We therefore created predictions of patterns in plant functional traits that would test the alternative stable states model of these systems. We measured functional traits of 128 trees and shrubs across tropical and temperate rainforest - open vegetation transitions in Australia, with giant eucalypt forests situated between these vegetation types. We analysed a set of functional traits: leaf carbon isotopes, leaf area, leaf mass per area, leaf slenderness, wood density, maximum height and bark thickness, using univariate and multivariate methods. For most traits, giant eucalypt forest was similar to rainforest, while rainforest, particularly tropical rainforest, was significantly different from the open vegetation. In multivariate analyses, tropical and temperate rainforest diverged functionally, and both segregated from open vegetation. Furthermore, the giant eucalypt forests overlapped in function with their respective rainforests. The two types of giant eucalypt forests also exhibited greater overall functional similarity to each other than to any of the open vegetation types. We conclude that tropical and temperate giant eucalypt forests are ecologically and functionally convergent. The lack of clear functional differentiation from rainforest suggests that giant eucalypt forests are unstable states within the basin of attraction of rainforest. Our results have important implications for giant eucalypt forest management.\",\"doi\":\"10.1371\\/journal.pone.0084378\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Greg J. Jordan; David Y. P. Tng; David M. J. S. Bowman; David M J S Bowman; David Y P Tng; Greg J Jordan; Tng, David Y. P.; Jordan, Greg J.; Bowman, David M. J. S.; David M. J. S. Bowman; David Y. P. Tng; Greg J. Jordan; David Y P, Tng; David M J S, Bowman; Greg J, Jordan\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.197639118307433\",\"y\":\"-0.0758870989288165\",\"labels\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"subject\":\"cycle du carbone\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"Copernicus GmbH\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Biogeosciences\",\"link\":\"https:\\/\\/hdl.handle.net\\/10067\\/1447620151162165141\",\"fulltext\":\"https:\\/\\/hal.univ-lorraine.fr\\/hal-01557759\\/document\",\"paper_abstract\":\"\u003Cjats:p\u003EAbstract. The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121.\u003C\\/jats:p\u003E\",\"doi\":\"10.5194\\/bg-13-2537-2016\",\"project_id\":\"LP0219425\",\"accessright\":\"Open Access\",\"authors\":\"Hans Beeckman; Vivien Rossi; Fabr\\u00edcio Alvim Carvalho; Simone Aparecida Vieira; Helmut Dalitz; Franziska Volland; Davi Rodrigo Rossatto; J\\u00e9r\\u00f4me Chave; Rapha\\u00ebl P\\u00e9lissier; Marcio Fedele; Hector Maza Maza Chamba; Kaiyu Guan; Kaiyu Guan; Marisol Toledo; Steven F. Oberbauer; Jos\\u00e9 Julio de Toledo; Cl\\u00e9ment Stahl; Cl\\u00e9ment Stahl; Renato Francisco Rodrigues Marques; Michael D. Swaine; J. Julio Camarero; Karina Melga\\u00e7o; Michael S. Ross; Lucy Rowland; Ervan Rutishauser; Fl\\u00e1via R. C. Costa; Fabien Wagner; Franklin Galv\\u00e3o; Oliver D\\u00fcnisch; Foster Brown; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Magda Lea Bolzan Zanon; Jean-Louis Devineau; Lynda D. Prior; Pl\\u00ednio Barbosa de Camargo; Joseph J. O'Brien; Lawrence Mbwambo; Carolina V. Castilho; Juan Ignacio Valdez Hern\\u00e1ndez; Marcos Miranda Toledo; Mario Tomazello Filho; Hooz Angela Mendivelso; Achim Br\\u00e4uning; Deborah A. Clark; Jos\\u00e9 Luis L\\u00f3pez Ayala; Augusto C. Franco; Diogo Selhorst; Ja\\u00e7anan Eloisa de Freitas Milani; Takeshi Toma; Benjamin Brede; Liana O. Anderson; Paulo Henrique da Silva Mauricio; Afonso Figueiredo Filho; Marcos Silveira; Jennifer Koenig; Gr\\u00e9goire Vincent; Danilo Boanerges Souza; Claudio Sergio Lisi; Claudio Sergio Lisi; James Grogan; Edilson Consuelo de Oliveira; Wendeson Castro; Jan Verbesselt; Williamar Rodrigues Silva; Brett P. Murphy; Eduardo Eijji Maeda; Luciano de Souza Arruda; Fernanda C. G. Cardoso; M\\u00e1rcia C. M. Marques; Martin Worbes; Sintia Valerio Kohler; Bruno H\\u00e9rault; E. N. Chidumayo; Elisha Elifuraha; Maria Raquel Kanieski; Fidel A. Roig; Robert Gliniars; Giselda Durigan; David M. Drew; Ligia Ferreira Fedele; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Lip Khoon Kho; J\\u00fcrgen Homeier; Mark Schulze; Vivian R. B. Maria; Julia Krepkowski; Timothy R. Baker; Vinicius Resende de Castro; Damien Bonal; Milton Eugene Lieberman; Paulo Cesar Botosso; David M. J. S. Bowman; Camille Couralet; Hellen Paredio Santana; Diana Lieberman; Rubens Koloski Chagas; Jos\\u00e9 P. Lemos-Filho; Jo\\u00e3o Lima Freitas J\\u00fanior; Anthony D. Griffiths; Naoki Okada; Aster Gebrekirstos; Luiz E. O. C. Arag\\u00e3o; Luiz E. O. C. 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Drew; Jan Verbesselt; Susanne Spannl; Ligia Ferreira Fedele; Lip Khoon Kho; Elisha Elifuraha; Gabriel Sebastian Becker; Vivien Rossi; Bruno H\\u00e9rault; James Grogan; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; Santo, Tomaz,; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; de Castilho, C. V.; Guan, K.; Mauricio, P. H. D.; Galvao, F.; Elifuraha, E.; Zanon, M. L. B.; Gliniars, R.; Herault, B.; Maeda, E. E.; Worbes, M.; Stahl, C.; Drew, D. M.; Santos, T. L.; Rossatto, D. R.; Rowland, L.; de Oliveira, E. C.; Toledo, J. J.; Arruda, L. D. S.; Figueiredo, A.; Ross, M.; Chave, J.; Clark, D. A.; Dalitz, H.; Volland, F.; Krepkowski, J.; Marques, M. C. M.; Milani, J. E. D.; Souza, D. B.; Franco, A. C.; Devineau, J. L.; Mendivelso, H. A.; Castro, W.; Toledo, M.; Grogan, J.; Kanieski, M. R.; Baker, T. R.; Brede, B.; Rutishauser, E.; Finger, C. A. G.; Prior, L. D.; Costa, F. R. C.; Silva, W. R.; Bowman, D. M. J. S.; Ayala, J. L. L.; Selhorst, D.; Becker, G. S.; Marques, R.; Aragao, L. E. O. C.; Hernandez, J. I. V.; Couralet, C.; Santana, H.; Malhi, Y.; Fedele, M.; Homeier, J.; Beeckman, H.; Oberbauer, S. F.; Gebrekirstos, A.; Kohler, S. V.; Vincent, Gr\\u00e9goire; de Castro, V. R.; Kho, L. K.; Murphy, B. P.; Koenig, J.; Melgaco, K. L. L.; Lieberman, D.; Freitas, J. 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M.; Castro, Wendeson; Lopez Ayala, Jose Luis; Ross, Michael; Rutishauser, Ervan; Alejandro Roig, Fidel; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; Toledo, Jose Julio; Kho, Lip Khoon; Koenig, Jennifer; Pelissier, Raphael; Fedele, Marcio; Julio Camarero, Jesus; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Angela Mendivelso, Hooz; Brown, Foster Irving; E. N. Chidumayo; J. J. Camarero; H. A. Mendivelso; S. V. Kohler; D. Lieberman; M. Toledo; A. D. Griffiths; M. D. Swaine; K. L. L. Melga\\u00e7o; S. A. Vieira; M. Ross; M. Schulze; G. S. Becker; L. K. Kho; E. C. de Oliveira; J. Verbesselt; Y. Malhi; M. Tomazello Filho; L. Ferreira Fedele; L. Mbwambo; F. A. Roig; J. Koenig; G. Vincent; F. H. Wagner; W. R. Silva; M. C. M. Marques; M. E. Lieberman; M. L. B. Zanon; A. Figueiredo Filho; J. L. L\\u00f3pez Ayala; L. de Souza Arruda; F. I. Brown; C. S. Lisi; D. Boanerges Souza; C. Couralet; H. Santana; J. Krepkowski; W. Castro; F. Volland; L. E. O. C. Arag\\u00e3o; T. Longhi Santos; C. Volkmer de Castilho; F. A. Carvalho; J. Chave; J. I. Valdez Hern\\u00e1ndez; D. A. Clark; M. Fedele; A. Br\\u00e4uning; M. Worbes; V. Rossi; V. R. B. Maria; J. Homeier; S. F. Oberbauer; J.-L. Devineau; H. Dalitz; K. Guan; J. E. de Freitas Milani; C. A. G. Finger; J. J. Toledo; P. M. L. D. A. Gra\\u00e7a; S. Spannl; L. O. Anderson; D. R. Rossatto; B. Brede; T. R. Baker; J. Grogan; M. Silveira; R. K. Chagas; G. Durigan; O. D\\u00fcnisch; D. M. J. S. Bowman; N. Okada; E. Elifuraha; L. D. Prior; V. R. de Castro; R. P\\u00e9lissier; L. Rowland; F. R. C. Costa; E. E. Maeda; F. Galv\\u00e3o; J. L. Freitas J\\u00fanior; J. J. O'Brien; B. H\\u00e9rault; H. Beeckman; R. Gliniars; J. P. Lemos-Filho; E. Rutishauser; D. Selhorst; A. Gebrekirstos; F. C. G. Cardoso; B. P. Murphy; C. Stahl; M. M. Toledo; H. Maza Chamba; P. H. da Silva Mauricio; P. C. Botosso; T. Toma; P. B. Camargo; R. Marques; D. M. Drew; D. Bonal; A. C. Franco; M. R. 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B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Stahl, Clement; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Pelissier, Rapha\\u00ebl; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Herault, Bruno; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Bowman, David M. J. S.; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; da Silva Mauricio, Paulo Henrique; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Spannl, Susanne; Tomazello Filho, Mario; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Longhi Santos, Tomaz; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo\",\"subject_orig\":\"cycle du carbone\",\"oa_state\":1,\"url\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.367382118335057\",\"y\":\"0.397753425114482\",\"labels\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"subject\":\"0106 biological sciences\",\"title\":\"Conservative water management in the widespread conifer genus Callitris\",\"year\":\"2013-11-13\",\"publisher\":\"Oxford University Press (OUP)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"AoB PLANTS\",\"link\":\"https:\\/\\/doi.org\\/10.1093\\/aobpla\\/plt052\",\"fulltext\":\"\",\"paper_abstract\":\"Water management by woody species encompasses characters involved in seeking, transporting and evaporating water. Examples of adaptation of individual characters to water availability are common, but little is known about the adaptability of whole-plant water management. Here we use plant hydration and growth to examine variation in whole-plant water management characteristics within the conifer genus Callitris. Using four species that cover the environmental extremes in the Australian continent, we compare seasonal patterns of growth and hydration over 2 years to determine the extent to which species exhibit adaptive variation to the local environment. Detailed measurements of gas exchange in one species are used to produce a hydraulic model to predict changes in leaf water potential throughout the year. This same model, when applied to the remaining three species, provided a close representation of the measured patterns of water potential gradient at all sites, suggesting strong conservation in water management, a conclusion supported by carbon and oxygen isotope measurements in Callitris from across the continent. We conclude that despite its large range in terms of rainfall, Callitris has a conservative water management strategy, characterized by a high sensitivity of growth to rainfall and a delayed (anisohydric) closure of stomata during soil drying.\",\"doi\":\"10.1093\\/aobpla\\/plt052\",\"project_id\":\"FT100100237\",\"accessright\":\"Open Access\",\"authors\":\"Scott Nichols; David M. J. S. Bowman; Lynda D. Prior; Timothy J. Brodribb; Brett P. Murphy; Brett P. Murphy; Pauline F. Grierson; S. Nichols; T. J. Brodribb; P. F. Grierson; D. M. J. S. Bowman; B. P. Murphy; L. D. Prior; Brodribb, Timothy J.; Nichols, Scott; Bowman, David M. J. S.; Murphy, Brett P.; Grierson, Pauline F.; Prior, Lynda D.\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.268025677052877\",\"y\":\"0.18910176812401\",\"labels\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"subject\":\"13. Climate action\",\"title\":\"Are giant eucalypt forests rain forest?\",\"year\":\"2023-01-01\",\"publisher\":\"University Of Tasmania\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/doi.org\\/10.25959\\/23243075\",\"fulltext\":\"\",\"paper_abstract\":\"Forests dominated by giant eucalypts ( eucalypt species with the potential to attain heights exceeding 70m) occur along the Australian east coast in association with rain forest. These forests contribute significantly to the global carbon budget but their ecological classification suffers from ambiguities around the definition of rain forest. The belief that eucalypts are 'sclerophyllous' and therefore not rain forest is a subjective view that has led to problems with conservation policies and management strategies of giant eucalypt forests. Understanding these forests from a global and functional viewpoint is paramount for their effective management. Eucalyptus grandis-dominated giant eucalypt forests in the Wet Tropics of Australia serve as a case study. Observing that rain forest species continuously regenerate in the understories of these eucalypt forests and believing that rain forest incursion will lead to the local elimination of the giant eucalypts, land managers prescribe frequent, low intensity fires. This management strategy is contentious and not underpinned by robust ecological understanding. To resolve these classificatory problems around eucalypts occurring in rain forest, I take a multidisciplinary approach to address the specific question: Are giant eucalypt forests rain forests? To obtain an in depth understanding of the ecology of giant eucalypts and the forests they dominate, and to provide a global context for these systems, I synthesise over a century's worth of literature on these systems (Chapter 2). Based on these data I propose that giant eucalypts are ecologically akin to rain forest emergent pioneers with a unique dependence on fire for regeneration, and that their habitat should be considered a type of secondary rain forest. Using a GIS-based approach I investigate the landscape scale vegetation dynamics of rain forest and E. grandis forest in the Wet Tropics, where E. grandis forests are considered to be threatened (Chapter 3). Using a environmentally stratified sample of sites, I show that rain forest has expanded over the past 50 years, and that this expansion is most likely a response to a global driver such as increased atmospheric CO2 rather than with local environmental factors. Projective modelling of this rain forest expansion predicts that, even at the fastest estimated rate known for the region, it will be more than 2000 years before rain forest fully engulfs giant eucalypt forests. In Chapter 4, I present a seedling growth experiment to examine if the regeneration niche of E. grandis exhibits ecological convergence with that of well-studied temperate giant eucalypts. I show that E. grandis seedlings grow poorly in unburnt rain forest soils because of the unavailability of phosphorus. The addition of phosphorus lifts phosphorus-deficiency symptoms in seedlings in rain forest soils, and accords well with the idea of E. grandis being a rain forest pioneer with the unique requirement of fire as a disturbance mechanism to create suitable open habitats for regeneration. To contextualize the rain forest- giant eucalypt forest - savanna transitions in Australia from a functional and macroecological perspective, I present a plant functional trait analysis of representative plants across these vegetation transitions in both tropical and temperate Australia (Chapter 5). I show that both tropical and temperate giant eucalypt forest are functionally convergent with rain forest and not with savanna. These results suggest that a classification of giant eucalypt forest based on functional attributes of the whole forest will be more useful for management policy than the established classification based on canopy dominants. In conclusion (Chapter 6), the synthesis ofmy landscape ecology and functional biology data supports my overarching hypothesis that giant eucalypt forests are functionally and ecologically rain forests and should be managed as such. I discuss the implications of my research for the management of Wet Tropics giant eucalypt forest and recommend that E. grandis forest should be managed under a regime of total fire suppression. Given that rare natural fires can be expected to occur under this management, the resulting regime will mimic the inherently long fire return times of these systems.\",\"doi\":\"10.25959\\/23247668.v1\",\"project_id\":\"DP0878177\",\"accessright\":\"not available\",\"authors\":\"Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP\",\"subject_orig\":\"13. Climate action\",\"oa_state\":0,\"url\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.246040628440847\",\"y\":\"-0.167350749419719\",\"labels\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"subject\":\"0106 biological sciences\",\"title\":\"Humid tropical rain forest has expanded into eucalypt forest and savanna over the last 50 years\",\"year\":\"2011-11-24\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Ecology and Evolution\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1002\\/ece3.70\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/11343\\/264893\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003ETropical rain forest expansion and savanna woody vegetation thickening appear to be a global trend, but there remains uncertainty about whether there is a common set of global drivers. Using geographic information techniques, we analyzed aerial photography of five areas in the humid tropics of northeastern Queensland, Australia, taken in the 1950s and 2008, to determine if changes in rain forest extent match those reported for the Australian monsoon tropics using similar techniques. Mapping of the 1950s aerial photography showed that of the combined study area (64,430 ha), 63% was classified as eucalypt forests\\/woodland and 37% as rain forest. Our mapping revealed that although most boundaries remained stable, there was a net increase of 732 ha of the original rain forest area over the study period, and negligible conversion of rain forest to eucalypt forest\\/woodland. Statistical modeling, controlling for spatial autocorrelation, indicated distance from preexisting rain forest as the strongest determinant of rain forest expansion. Margin extension had a mean rate across the five sites of 0.6 m per decade. Expansion was greater in tall open forest types but also occurred in shorter, more flammable woodland vegetation types. No correlations were detected with other local variables (aspect, elevation, geology, topography, drainage). Using a geographically weighted mean rate of rain forest margin extension across the whole region, we predict that over 25% of tall open forest (a forest type of high conservation significance) would still remain after 2000 years of rain forest expansion. This slow replacement is due to the convoluted nature of the rain forest boundary and the irregular shape of the tall open forest patches. Our analyses point to the increased concentration of atmospheric CO\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003Eas the most likely global driver of indiscriminate rain forest expansion occurring in northeastern Australia, by increasing tree growth and thereby overriding the effects of fire disturbance.\u003C\\/jats:p\u003E\",\"doi\":\"10.1002\\/ece3.70\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"David Y. P. Tng; Gregor J. Sanders; Ellen Weber; Grant J. Williamson; Brett P. Murphy; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Gregor Sanders; Grant J. Williamson; Ellen Weber; David Y. P. Tng; David Y P, Tng; David M J S, Bowman; Brett P, Murphy; Ellen, Weber; Grant J, Williamson; Gregor, Sanders; Jeanette, Kemp; Murphy, Brett P; Williamson, Grant J; Tng, David Y P; Sanders, Gregor; Kemp, Jeanette; Bowman, David M J S; Weber, Ellen\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.226080980470218\",\"y\":\"-0.155664175951863\",\"labels\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"subject\":\"0301 basic medicine\",\"title\":\"Ancestral stomatal control results in a canalization of fern and lycophyte adaptation to drought\",\"year\":\"2013-02-20\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"New Phytologist\",\"link\":\"https:\\/\\/pubmed.ncbi.nlm.nih.gov\\/23421706\\/\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003ESummary\u003C\\/jats:title\u003E\u003Cjats:p\u003E \u003Cjats:list list-type=\\\"bullet\\\"\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003ELittle is known about how a predominantly passive hydraulic stomatal control in ferns and lycophytes might impact water use under stress. Ferns and lycophytes occupy a diverse array of habitats, from deserts to rainforest canopies, raising the question of whether stomatal behaviour is the same under all ecological strategies and imposes ecological or functional constraints on ferns and lycophytes.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EWe examined the stomatal response of a diverse sample of fern and lycophyte species to both soil and atmospheric water stress, assessing the foliar level of the hormone abscisic acid (\u003Cjats:styled-content style=\\\"fixed-case\\\"\u003EABA\u003C\\/jats:styled-content\u003E) over drought and recovery and the critical leaf water potential (\\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E) at which photosynthesis in droughted leaves failed to recover.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EThe stomata of all ferns and lycophytes showed very predictable responses to soil and atmospheric water deficit via \\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E, while stomatal closure was poorly correlated with changes in ABA. We found that all ferns closed stomata at very low levels of water stress and their survival afterwards was limited only by their capacitance and desiccation tolerance.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EFerns and lycophytes have constrained stomatal responses to soil and atmospheric water deficit as a consequence of a predominantly passive stomatal regulation. This results in a monotypic strategy in ferns and lycophytes under water stress.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003C\\/jats:list\u003E \u003C\\/jats:p\u003E\",\"doi\":\"10.1111\\/nph.12190\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.523766748428778\",\"y\":\"0.152693334034553\",\"labels\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"subject\":\"0106 biological sciences\",\"title\":\"Aborigine\\u2010managed forest, savanna and grassland: biome switching in montane eastern Australia\",\"year\":\"2014-04-10\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1111\\/jbi.12306\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/1885\\/74078\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003ETo assess hypotheses about the role of anthropogenic fire in the maintenance and origin of a fine\\u2010scale vegetation mosaic of rain forest, eucalypt savanna and grassland.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EBunya Mountains, subtropical eastern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EA time series of vegetation maps was compiled from historical and recent aerial photography and field surveys. Geospatial models were constructed of environmental domains for rain forest, savanna and grassland, and for areas of biome change. Grassland soils were analysed for carbon isotope ratios (\\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC), and radiocarbon (\u003Cjats:sup\u003E14\u003C\\/jats:sup\u003EC) dates were acquired for bulk samples from a range of depths.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EAnalysis revealed weak associations between topography and the distribution of rain forest, savanna and grassland, and their patterns of recent change. Grassland occupied an environmental domain intermediate between rain forest and savanna and was more than four times as likely to occur within a matrix of rain forest rather than savanna. There was a large proportional reduction in the area of both grassland (\\u221235%) and savanna (\\u221219%) between 1961 and 2006 because of the expansion of rain forest. However, the greater initial extent of savanna meant that the areal loss of savanna was an order of magnitude greater than for grassland (1433 vs. 146\\u00a0ha). There was no evidence of abrupt changes in \\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC in grassland soil profiles, indicating stability of the vegetation over the last 2000\\u00a0years.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThere is no simple gradient in \\u2018tree suitability\\u2019 from rain forest, through savanna, to treeless grassland on the Bunya Mountains. A general absence of fire since the 19th century has greatly reduced the extent of grassy savanna and grassland formations, to the advantage of rain forest. These results support the hypothesis that the vegetation mosaic on the Bunya Mountains is a cultural artefact and testament to millennia of skilful and persistent burning. We could not conclusively reject the hypothesis that the grasslands are Pleistocene relicts that have declined throughout the Holocene; nonetheless, an explanation more consistent with the evidence overall is that the grasslands must have had periods of expansion during the Holocene, probably as a consequence of severe fires that have destroyed patches of rain forest.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12306\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Butler, Don W.; Fensham, Rod; Murphy, Brett P.; Bury, Sarah J.; Bowman, David M. J. S.; Haberle, Simon; Brett P. Murphy; Sarah J. Bury; David M. J. S. Bowman; Simon G. Haberle; Don W. Butler; Roderick J. Fensham\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.214181365281173\",\"y\":\"-0.281557825509733\",\"labels\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"subject\":\"0106 biological sciences\",\"title\":\"Alternative stable states and the role of fire\\u2013vegetation\\u2013soil feedbacks in the temperate wilderness of southwest Tasmania\",\"year\":\"2011-11-06\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-011-9677-0\",\"fulltext\":\"\",\"paper_abstract\":\"Two ecological models have been put forward to explain the dynamics of fire-promoting and fire-sensitive vegetation in southwest Tasmania: the alternative stable states model of Jackson (in Proc Ecol Soc Aust 3:9\\u201316, 1968) and the sharpening switch model of Mount (in Search 10:180\\u2013186, 1979). Assessing the efficacy of these models requires high resolution spatio-temporal data on whether vegetation patterns are stable or dynamic across landscapes. We analysed ortho-rectified sequences of aerial photography and satellite imagery from 1948, 1988 and 2010 to detect decadal scale changes in forest and non-forest vegetation cover in southwest Tasmania. There was negligible change from forest to non-forest (\u003C0.05%) and only a modest change from non-forest to forest over the study period. Forest cover increased by 4.1% between 1948 and 1988, apparently due to the recovery of forest vegetation following stand-replacing fire prior to 1948. Forest cover increased by 0.8% between 1988 and 2010, reflecting the limited ability of forest to invade treeless areas. The two models include interactions between vegetation, fire and soil, which we investigated by analysing the chemical (phosphorus, nitrogen) and physical properties (clay, silt) of 128 soil samples collected across 34 forest\\u2013non-forest boundaries. Phosphorus in the upper horizon was typically lower in non-forest vegetation compared to forest vegetation, which is consistent with proposed fire\\u2013vegetation\\u2013soil feedbacks. Mineral horizons were dominated by sand, with low levels of clay under all vegetation types. Available field evidence lends support to the Jackson (1968) alternative stable states model as the most suitable model of vegetation dynamics on nutrient poor substrates in southwest Tasmania although modifications of the timeframes for transitions toward rainforest are required.\",\"doi\":\"10.1007\\/s10980-011-9677-0\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Samuel W. Wood; David M. J. S. Bowman; Sam W. Wood\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.363903148059666\",\"y\":\"-0.104475505046146\",\"labels\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"subject\":\"0106 biological sciences\",\"title\":\"Has global environmental change caused monsoon rainforests to expand in the Australian monsoon tropics?\",\"year\":\"2010-06-24\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-010-9496-8\",\"fulltext\":\"\",\"paper_abstract\":\"A large research program in the Australian monsoon tropics has concluded that monsoon rainforests have expanded within the savanna matrix, a trend that has been emulated throughout the tropics worldwide. The driver of the northern Australian trend was not resolved, but it was suggested to be linked to a long-term trend towards wetter climates, atmospheric CO2 enrichment, and changed fire regimes. We review these findings with particular consideration of its analytical and evidentiary basis and plausibility of the global change hypothesis. Field validation has largely demonstrated that the aerial photographic technique that underpinned the previous research is reliable enough to detect rainforest expansion. Statistical modelling demonstrated that the expansion is related to sites with regionally low fire activity, although models are of low explanatory power reflecting the sketchy historical records of fire and feral animal impacts. Field studies show that current fire regimes adjacent to expanding rainforest patches are causing populations of the native conifer Callitris intratropica, an obligate seeder, to crash. Therefore, it is unlikely that changes in fire regimes, which have been deleterious to other fire-sensitive taxa and plant communities in the region, are responsible for the rainforest expansion. We conclude that the expansion of monsoon rainforests is most plausibly linked to the current wetting trend or elevated CO2 concentration. Increases in either water availability or CO2 concentration can potentially overwhelm the negative feedback between fire and rainforest cover that is responsible for the meta-stability of monsoon rainforest boundaries. However, further research at the continental scale, using aerial photography, tree rings and other proxies, is required to evaluate this hypothesis.\",\"doi\":\"10.1007\\/s10980-010-9496-8\",\"project_id\":\"LP0346929\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Daniel S. Banfai; Brett P. Murphy; Brett P. Murphy; Daniel S. Banfai; David M. J. S. Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.188262242757116\",\"y\":\"-0.114417703128843\",\"labels\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"subject\":\"0301 basic medicine\",\"title\":\"Australia\\u2014A Model System for the Development of Pyrogeography\",\"year\":\"2011-04-01\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Fire Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.4996\\/fireecology.0701005\",\"fulltext\":\"\",\"paper_abstract\":\"We define pyrogeography as an integrative, multidisciplinary perspective of landscape fire, its ecological effects, and its relationships with human societies. Like biogeography, this program spans geographic scales from the local to the global, has an evolutionary frame, and thus a geological dimension. And, like other geographic disciplines, pyrogeography has a clear commitment to understanding the interrelationships between cultures and their environment. We illustrate our approach by considering the pyrogeography of Australia. We demonstrate how a long history of fire has had a pervasive influence on the continent\\u2019s biota. While Aborigines coexisted with flammable landscapes for millennia, contemporary Australian society is still learning to live in a land of fire.\",\"doi\":\"10.4996\\/fireecology.0701005\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Brett P. Murphy; David M. J. S. Bowman; Brett P. Murphy; David M. J. S. Bowman\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0561772020500714\",\"y\":\"0.441696304061327\",\"labels\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"subject\":\"0106 biological sciences\",\"title\":\"Fire regimes and woody biomass dynamics in Australian savannas\",\"year\":\"2013-08-30\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/10.1111\\/jbi.12204\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003EMany tropical savannas are undergoing a trend of increasing woody biomass, or \\u2018woody thickening\\u2019. Management to reduce fire frequency and intensity in savannas could substantially increase the amount of carbon stored in woody biomass. We addressed two questions: (1) are northern Australian savannas thickening; and (2) to what extent, and by what demographic processes, does fire affect woody biomass accumulation?\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EThree large national parks, covering 24,000\\u00a0km\u003Cjats:sup\u003E2\u003C\\/jats:sup\u003E, in monsoonal northern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EWe examined changes in woody biomass carbon stocks \\u2013 inferred from tree basal area and the density of woody understorey plants \\u2013 over a 10\\u2010year period in 136 savanna monitoring plots. We statistically assessed these changes in relation to fire frequency and severity. We used a meta\\u2010analysis to identify general trends in woody cover in Australian savannas over the last half\\u2010century.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EWoody biomass carbon stocks were relatively stable across the three national parks, but rates of change were statistically indistinguishable from earlier findings of a weak thickening trend. Change was negatively correlated with fire frequency, particularly the frequency of severe fires. High frequencies of severe fires decreased rates of accumulation of biomass by existing trees (through reductions in tree growth and death of individual stems), rather than whole\\u2010tree mortality and suppression of recruitment. However, across northern Australia, our meta\\u2010analysis identified a general, albeit weak, trend of woody thickening.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThe drivers of northern Australia's weak thickening trend are uncertain, but likely candidates include increasing atmospheric \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E concentration and water availability, and pastoral intensification. We demonstrate that changes to fire management have the potential to either increase or decrease rates of woody thickening relative to any underlying trend. Understanding how savanna fires affect woody biomass, and how fire effects are mediated by climate and \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E, are essential research priorities to predict the fate of savannas.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12204\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Caroline E. R. Lehmann; Caroline E. R. Lehmann; Brett P. Murphy; Brett P. Murphy; Caroline E. R. Lehmann; Jeremy Russell\\u2010Smith; Michael J. Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.250484439327965\",\"y\":\"-0.37778601916065\",\"labels\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"area_uri\":3,\"area\":\"0106 biological sciences\"},{\"id\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"subject\":\"0106 biological sciences\",\"title\":\"Population collapse of a Gondwanan conifer follows the loss of Indigenous fire regimes in a northern Australian savanna\",\"year\":\"2022-05-31\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Scientific Reports\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1038\\/s41598-022-12946-3\",\"fulltext\":\"http:\\/\\/purl.org\\/au-research\\/grants\\/arc\\/DP150101777\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003EColonialism has disrupted Indigenous socioecological systems around the globe, including those supported by intentional landscape burning. Because most disruptions happened centuries ago, our understanding of Indigenous fire management is largely inferential and open to debate. Here, we investigate the ecological consequences of the loss of traditional Aboriginal fire management on fire-exposed savannas on the Arnhem Plateau, northern Australia, using the fire-sensitive conifer \u003Cjats:italic\u003ECallitris intratropica\u003C\\/jats:italic\u003E as a bio-indicator. We contrast Kakadu National Park, where traditional Aboriginal fire management was severely disrupted during the early twentieth century following Aboriginal relocation to surrounding settlements, and an adjacent Aboriginal estate where traditional Aboriginal fire management endures. Since 2006, traditional Aboriginal fire management at this site has been overlaid by a program of broad-scale institutionalized burning in the early dry season, designed to reduce greenhouse emissions. Using remote sensing, field survey, and dendrochronology, we show that on the Aboriginal estate, \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E populations depend on the creation of a shifting patch mosaic of long unburned areas necessary for the recruitment of \u003Cjats:italic\u003EC. intratropica.\u003C\\/jats:italic\u003E However, the imposition of broad-scale fire management is disrupting this population patch dynamic. In Kakadu, there have been extreme declines of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E associated with widespread fires since the mid twentieth century and consequent proliferation of grass fuels. Fire management in Kakadu since 2007, designed to increase the size and abundance of patches of unburned vegetation, has not been able to reverse the population collapse of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E. Our study demonstrates that colonial processes including relocation of Indigenous people and institutional fire management can have deleterious consequences that are nearly irreversible because of hysteresis in \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E population dynamics.\u003C\\/jats:p\u003E\",\"doi\":\"10.1038\\/s41598-022-12946-3\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Bowman, DMJS; Williamson, GJ; Johnston, FH; Bowman, CJW; Murphy, BP; Roos, CI; Trauernicht, C; Rostron, J; Prior, LD; Bowman, DMJS; Prior, LD; Haverkamp, C; Rann, KD; Donald C. Franklin; Sean M. Bellairs; Pascale Taplin; Michael J. Lawes; Brook, B.; Prior, L.; Bowman, D.; Walsh, Angie; Bowman, David M. J. S.; Whitehead, Peter J.; Price, Owen; Rosanne D'Arrigo; Jonathan G. Palmer; Patrick J. Baker; Brittany Dahl; Declan Norrie; Kathryn Allen; Lynda D. Prior; David J. M. S. Bowman; Scott Nichols; Jonathan G. Palmer; Matthew Brookhouse; Ben J. French; David M. J. S. Bowman; David M. J. S. Bowman; Owen Price; Nichols, SC; MacDermott, HJ; Bowman, DMJS; Murphy, BP; Russell-Smith, Jeremy; Yibarbuk, D.; Cooke, P; Bowman, David M. J. S.; Jackson, DM; Whitehead, Peter J.; Fisher, Alaric; Godjuwa, C; Choquenot, D; David M. J. S. Bowman; Stuart Pearson; Kathryn Allen; Quan Hua; Brett P. Murphy; David M. J. S. Bowman; Talia E. Portner; Clay Trauernicht; Wanner, J\\u00fcrgen; Buchbauer, Gerhard; Jirovetz, Leopold; Schmidt, Erich; Bowman, David M. J. S.; Murphy, Brett P.; Roos, Christopher I.; Rostron, Joshua; Williamson, Grant J.; Johnston, Fay H.; Bowman, Clarence J. W.; Trauernicht, Clay; Prior, Lynda D.; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; David M J S, Bowman; Christopher I, Roos; Fay H, Johnston; Brett P, Murphy; Joshua, Rostron; Lynda D, Prior; Grant J, Williamson; Clay, Trauernicht; Clarence J W, Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0231958227792847\",\"y\":\"0.278514210389028\",\"labels\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"subject\":\"0301 basic medicine\",\"title\":\"Unique Responsiveness of Angiosperm Stomata to Elevated CO2 Explained by Calcium Signalling\",\"year\":\"2013-11-20\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0082057\",\"fulltext\":\"\",\"paper_abstract\":\"Angiosperm and conifer tree species respond differently when exposed to elevated CO2, with angiosperms found to dynamically reduce water loss while conifers appear insensitive. Such distinct responses are likely to affect competition between these tree groups as atmospheric CO2 concentration rises. Seeking the mechanism behind this globally important phenomenon we targeted the Ca(2+)-dependent signalling pathway, a mediator of stomatal closure in response to elevated CO2, as a possible explanation for the differentiation of stomatal behaviours. Sampling across the diversity of vascular plants including lycophytes, ferns, gymnosperms and angiosperms we show that only angiosperms possess the stomatal behaviour and prerequisite genetic coding, linked to Ca(2+)-dependent stomatal signalling. We conclude that the evolution of Ca(2+)-dependent stomatal signalling gives angiosperms adaptive benefits in terms of highly efficient water use, but that stomatal sensitivity to high CO2 may penalise angiosperm productivity relative to other plant groups in the current era of soaring atmospheric CO2.\",\"doi\":\"10.1371\\/journal.pone.0082057\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb; Brodribb, Timothy J.; McAdam, Scott A. M.; Timothy J Brodribb; Scott A M McAdam\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.543985837479226\",\"y\":\"0.0858289826142518\",\"labels\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"subject\":\"0106 biological sciences\",\"title\":\"Are the eucalypt and non-eucalypt components of Australian tropical savannas independent?\",\"year\":\"2010-11-10\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Oecologia\",\"link\":\"https:\\/\\/espace.cdu.edu.au\\/view\\/cdu:37682\",\"fulltext\":\"\",\"paper_abstract\":\"Eucalypts (Eucalyptus and Corymbia spp.) dominate (60%) the tree biomass of Australia's tropical savannas but account for only a fraction (28%) of the tree diversity. Because of their considerable biomass and adaptation to environmental stressors, such as fire, the eucalypts may drive tree dynamics in these savannas, possibly to the exclusion of non-eucalypts. We evaluated whether the eucalypt and non-eucalypt components in tropical savannas are dependent so that changes in one component are matched by opposite trends in the other. Using tree inventory data from 127 savanna sites across the rainfall and fire frequency gradients, we found that eucalypt and non-eucalypt basal area and species richness had a negative relationship. This relationship was maintained across the rainfall gradient, with rainfall having a positive effect on the basal area and species richness of both components, but with a greater effect in non-eucalypts. Fire frequency negatively affected basal area, but not species richness, although basal area and species richness of eucalypts and non-eucalypts did not differ in their response to fire. Rainfall appears to set the upper bounds to woody biomass in these mesic savannas, while fire maintains woody biomass below carrying capacity and facilitates coexistence of the components. The magnitude of the component responses, particularly for non-eucalypts, is determined by rainfall, but their dependence is likely due to their differential response to both rainfall and fire, but not to competition for resources. Thus, while eucalypts dominate biomass overall, at high rainfall sites non-eucalypt basal area and diversity are highest, especially where fire frequency is low.\",\"doi\":\"10.1007\\/s00442-010-1829-4\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Jeremy J. Midgley; Brett P. Murphy; J. Russell-Smith; M. J. Lawes; B. P. Murphy; J. J. Midgley; B P, Murphy; J, Russell-Smith; J J, Midgley; M J, Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.157225822455321\",\"y\":\"-0.438046176985289\",\"labels\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"area_uri\":3,\"area\":\"0106 biological sciences\"}]"} \ No newline at end of file diff --git a/local_dev/tools/insert_visualization.py b/local_dev/tools/insert_visualization.py new file mode 100644 index 000000000..b2726e5db --- /dev/null +++ b/local_dev/tools/insert_visualization.py @@ -0,0 +1,26 @@ +import requests + +def insert_visualization(vis_id): + # load the vis data from file + with open(f"{vis_id}.json", "r") as f: + data = f.read() + payload = {} + payload["vis_id"] = vis_id + # data is expected to be a json string + payload["data"] = data + # the post target may need to be adjusted to work with the current local docker network + res = requests.post("http://127.0.0.1:8081/dev/persistence/createVisualization/dev", + json=payload) + print(res.status_code) + print(res.text) + + +def main(): + vis_ids = [ + "9d4dc6b920d1e2cc08a741f7c56821db" + ] + for vis_id in vis_ids: + insert_visualization(vis_id) + +if __name__ == "__main__": + main() \ No newline at end of file From 0c7337209e2ca604ede5cd55dec70048102db067 Mon Sep 17 00:00:00 2001 From: andrei Date: Tue, 2 Dec 2025 15:19:41 +0100 Subject: [PATCH 03/11] feat: better vis data mocking --- local_dev/tools/insert_visualization.py | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/local_dev/tools/insert_visualization.py b/local_dev/tools/insert_visualization.py index b2726e5db..0b061fbe0 100644 --- a/local_dev/tools/insert_visualization.py +++ b/local_dev/tools/insert_visualization.py @@ -4,16 +4,21 @@ def insert_visualization(vis_id): # load the vis data from file with open(f"{vis_id}.json", "r") as f: data = f.read() + payload = {} payload["vis_id"] = vis_id - # data is expected to be a json string + payload['vis_title'] = 'Title' + payload['vis_clean_query'] = 'DP0878177' + payload['vis_query'] = 'DP0878177' + payload['vis_params'] = "{\"from\":\"1665-01-01\",\"to\":\"2022-06-21\",\"document_types\":[\"121\"],\"sorting\":\"most-relevant\",\"min_descsize\":\"300\"}" payload["data"] = data + # the post target may need to be adjusted to work with the current local docker network res = requests.post("http://127.0.0.1:8081/dev/persistence/createVisualization/dev", json=payload) print(res.status_code) print(res.text) - + def main(): vis_ids = [ From e796be4b2390be2d741410784eff2f15b3708b66 Mon Sep 17 00:00:00 2001 From: andrei Date: Wed, 3 Dec 2025 10:40:21 +0100 Subject: [PATCH 04/11] bugfix: data_config error --- local_dev/tools/insert_visualization.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/local_dev/tools/insert_visualization.py b/local_dev/tools/insert_visualization.py index 0b061fbe0..66b6ec4a7 100644 --- a/local_dev/tools/insert_visualization.py +++ b/local_dev/tools/insert_visualization.py @@ -7,7 +7,7 @@ def insert_visualization(vis_id): payload = {} payload["vis_id"] = vis_id - payload['vis_title'] = 'Title' + payload['vis_title'] = 'openaire' payload['vis_clean_query'] = 'DP0878177' payload['vis_query'] = 'DP0878177' payload['vis_params'] = "{\"from\":\"1665-01-01\",\"to\":\"2022-06-21\",\"document_types\":[\"121\"],\"sorting\":\"most-relevant\",\"min_descsize\":\"300\"}" From b0c499743666dddfe44d5cd9f91e497a4f51ca68 Mon Sep 17 00:00:00 2001 From: andrei Date: Wed, 3 Dec 2025 10:41:39 +0100 Subject: [PATCH 05/11] bugfix: persistence dependencies --- docker-compose.yml | 26 +++++++++++++++++--------- 1 file changed, 17 insertions(+), 9 deletions(-) diff --git a/docker-compose.yml b/docker-compose.yml index 64cae54e6..16336b40d 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -1,13 +1,13 @@ services: - db: - image: 'postgres:12.2-alpine' + image: "postgres:12.2-alpine" hostname: "${POSTGRES_HOSTNAME}" restart: unless-stopped environment: POSTGRES_USER: "${POSTGRES_USER}" POSTGRES_PASSWORD: "${POSTGRES_PASSWORD}" - command: postgres -c config_file=/etc/postgresql.conf -c hba_file=/etc/pg_hba.conf + command: + postgres -c config_file=/etc/postgresql.conf -c hba_file=/etc/pg_hba.conf volumes: - db_data:/var/lib/postgresql/data - ./local_dev/pg_hba.conf:/etc/pg_hba.conf @@ -16,18 +16,26 @@ services: - headstart redis: - image: 'redis:6.0-alpine' + image: "redis:6.0-alpine" restart: unless-stopped hostname: "${REDIS_HOST}" environment: REDIS_HOST: "${REDIS_HOST}" REDIS_PORT: "${REDIS_PORT}" - command: ["redis-server", "/etc/redis/redis.conf", "--bind", "${REDIS_HOST}", "--port", "${REDIS_PORT}"] + command: + [ + "redis-server", + "/etc/redis/redis.conf", + "--bind", + "${REDIS_HOST}", + "--port", + "${REDIS_PORT}", + ] volumes: - - 'redis:/var/lib/redis/data' - - ./local_dev/redis.conf:/etc/redis/redis.conf + - "redis:/var/lib/redis/data" + - ./local_dev/redis.conf:/etc/redis/redis.conf ports: - - "127.0.0.1:${REDIS_PORT}:${REDIS_PORT}" + - "127.0.0.1:${REDIS_PORT}:${REDIS_PORT}" networks: - headstart @@ -80,6 +88,7 @@ services: - ./server/workers/persistence/src:/api depends_on: - redis + - db networks: - headstart @@ -264,7 +273,6 @@ services: networks: - headstart - volumes: redis: db_data: From 1329b86237d6c10cd27f88e5a35c229d0d525163 Mon Sep 17 00:00:00 2001 From: andrei Date: Wed, 3 Dec 2025 11:56:51 +0100 Subject: [PATCH 06/11] feat: simple working example --- local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json | 2 +- local_dev/tools/insert_visualization.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json b/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json index dec7074f7..2ebba805e 100644 --- a/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json +++ b/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json @@ -1 +1 @@ -{"context":{"id":"9d4dc6b920d1e2cc08a741f7c56821db","query":"DP0878177","service":"openaire","timestamp":"Tue, 25 Feb 2025 21:20:07 GMT","params":"{\"project_id\":\"DP0878177\",\"funder\":\"ARC\",\"acronym\":\"\",\"title\":\"Understanding the impact of global environmental change on Australian forests and woodlands using rainforest boundaries and Callitris growth as bio-indicators\",\"start_date\":\"2008-01-01\",\"end_date\":\"2011-12-31\",\"special_clause\":\"false\",\"oa_mandate\":\"false\",\"organisations\":[],\"openaire_link\":\"http:\\/\\/purl.org\\/au-research\\/grants\\/arc\\/DP0878177\",\"obj_id\":\"arc_________::fe52f7d04f4139c2c80b4144c294f12d\",\"call_id\":\"\",\"funding_tree\":[null,null,\"Discovery Projects\"]}"},"data":"[{\"id\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"subject\":\"13. Climate action\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"European Geosciences Union\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"fulltext\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"paper_abstract\":\"The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121.\",\"doi\":\"\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Wagner, FH; H\\u00e9rault, B; Bonal, D; Stahl, C; Anderson, LO; Baker, TR; Sebastian Becker, G; Beeckman, H; Boanerges Souza, D; Cesar Botosso, P; Bowman, DMJS; Br\\u00e4uning, A; Brede, B; Irving Brown, F; Julio Camarero, J; Camargo, PB; Cardoso, FCG; Carvalho, FA; Castro, W; Koloski Chagas, R; Chave, J; Chidumayo, EN; Clark, DA; Regina Capellotto Costa, F; Couralet, C; Henrique Da Silva Mauricio, P; Dalitz, H; Resende De Castro, V; Milani, JEDF; Consuelo De Oliveira, E; De Souza Arruda, L; Devineau, JL; Drew, DM; D\\u00fcnisch, O; Durigan, G; Elifuraha, E; Fedele, M; Ferreira Fedele, L; Figueiredo Filho, A; Finger, CAG; C\\u00e9sar Franco, A; Jnior, LF; Galv\\u00e3o, F; Gebrekirstos, A; Gliniars, R; Maur\\u00edcio Lima De Alencastro Gra\\u00e7a, P; Griffiths, AD; Grogan, J; Guan, K; Homeier, J; Raquel Kanieski, M; Khoon Kho, L; Koenig, J; Valerio Kohler, S; Krepkowski, J; Lemos-Filho, JP; Lieberman, D; Eugene Lieberman, M; Sergio Lisi, C; Longhi Santos, T; Ayala, JLL; Eijji Maeda, E; Malhi, Y; Maria, VRB; Marques, MCM; Marques, R; Maza Chamba, H; Mbwambo, L; Liana Lisboa Melga\\u00e7o, K; Angela Mendivelso, H; Murphy, BP; O'Brien, JJ; F Oberbauer, S; Okada, N; Plissier, R; Prior, LD; Alejandro Roig, F; Ross, M; Rodrigo Rossatto, D; Rossi, V; Rowland, L; Rutishauser, E; Santana, H; Schulze, M; Selhorst, D; Rodrigues Silva, W; Silveira, M; Spannl, S; Swaine, MD; Toledo, JJ; Miranda Toledo, M; Toledo, M; Toma, T\",\"subject_orig\":\"13. Climate action\",\"oa_state\":1,\"url\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.395896433436244\",\"y\":\"0.169597229793406\",\"labels\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"subject\":\"0106 biological sciences\",\"title\":\"Plant Traits Demonstrate That Temperate and Tropical Giant Eucalypt Forests Are Ecologically Convergent with Rainforest Not Savanna\",\"year\":\"2013-12-17\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0084378\",\"fulltext\":\"\",\"paper_abstract\":\"Ecological theory differentiates rainforest and open vegetation in many regions as functionally divergent alternative stable states with transitional (ecotonal) vegetation between the two forming transient unstable states. This transitional vegetation is of considerable significance, not only as a test case for theories of vegetation dynamics, but also because this type of vegetation is of major economic importance, and is home to a suite of species of conservation significance, including the world's tallest flowering plants. We therefore created predictions of patterns in plant functional traits that would test the alternative stable states model of these systems. We measured functional traits of 128 trees and shrubs across tropical and temperate rainforest - open vegetation transitions in Australia, with giant eucalypt forests situated between these vegetation types. We analysed a set of functional traits: leaf carbon isotopes, leaf area, leaf mass per area, leaf slenderness, wood density, maximum height and bark thickness, using univariate and multivariate methods. For most traits, giant eucalypt forest was similar to rainforest, while rainforest, particularly tropical rainforest, was significantly different from the open vegetation. In multivariate analyses, tropical and temperate rainforest diverged functionally, and both segregated from open vegetation. Furthermore, the giant eucalypt forests overlapped in function with their respective rainforests. The two types of giant eucalypt forests also exhibited greater overall functional similarity to each other than to any of the open vegetation types. We conclude that tropical and temperate giant eucalypt forests are ecologically and functionally convergent. The lack of clear functional differentiation from rainforest suggests that giant eucalypt forests are unstable states within the basin of attraction of rainforest. Our results have important implications for giant eucalypt forest management.\",\"doi\":\"10.1371\\/journal.pone.0084378\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Greg J. Jordan; David Y. P. Tng; David M. J. S. Bowman; David M J S Bowman; David Y P Tng; Greg J Jordan; Tng, David Y. P.; Jordan, Greg J.; Bowman, David M. J. S.; David M. J. S. Bowman; David Y. P. Tng; Greg J. Jordan; David Y P, Tng; David M J S, Bowman; Greg J, Jordan\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.197639118307433\",\"y\":\"-0.0758870989288165\",\"labels\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"subject\":\"cycle du carbone\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"Copernicus GmbH\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Biogeosciences\",\"link\":\"https:\\/\\/hdl.handle.net\\/10067\\/1447620151162165141\",\"fulltext\":\"https:\\/\\/hal.univ-lorraine.fr\\/hal-01557759\\/document\",\"paper_abstract\":\"\u003Cjats:p\u003EAbstract. The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121.\u003C\\/jats:p\u003E\",\"doi\":\"10.5194\\/bg-13-2537-2016\",\"project_id\":\"LP0219425\",\"accessright\":\"Open Access\",\"authors\":\"Hans Beeckman; Vivien Rossi; Fabr\\u00edcio Alvim Carvalho; Simone Aparecida Vieira; Helmut Dalitz; Franziska Volland; Davi Rodrigo Rossatto; J\\u00e9r\\u00f4me Chave; Rapha\\u00ebl P\\u00e9lissier; Marcio Fedele; Hector Maza Maza Chamba; Kaiyu Guan; Kaiyu Guan; Marisol Toledo; Steven F. Oberbauer; Jos\\u00e9 Julio de Toledo; Cl\\u00e9ment Stahl; Cl\\u00e9ment Stahl; Renato Francisco Rodrigues Marques; Michael D. Swaine; J. Julio Camarero; Karina Melga\\u00e7o; Michael S. Ross; Lucy Rowland; Ervan Rutishauser; Fl\\u00e1via R. C. Costa; Fabien Wagner; Franklin Galv\\u00e3o; Oliver D\\u00fcnisch; Foster Brown; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Magda Lea Bolzan Zanon; Jean-Louis Devineau; Lynda D. Prior; Pl\\u00ednio Barbosa de Camargo; Joseph J. O'Brien; Lawrence Mbwambo; Carolina V. Castilho; Juan Ignacio Valdez Hern\\u00e1ndez; Marcos Miranda Toledo; Mario Tomazello Filho; Hooz Angela Mendivelso; Achim Br\\u00e4uning; Deborah A. Clark; Jos\\u00e9 Luis L\\u00f3pez Ayala; Augusto C. Franco; Diogo Selhorst; Ja\\u00e7anan Eloisa de Freitas Milani; Takeshi Toma; Benjamin Brede; Liana O. Anderson; Paulo Henrique da Silva Mauricio; Afonso Figueiredo Filho; Marcos Silveira; Jennifer Koenig; Gr\\u00e9goire Vincent; Danilo Boanerges Souza; Claudio Sergio Lisi; Claudio Sergio Lisi; James Grogan; Edilson Consuelo de Oliveira; Wendeson Castro; Jan Verbesselt; Williamar Rodrigues Silva; Brett P. Murphy; Eduardo Eijji Maeda; Luciano de Souza Arruda; Fernanda C. G. Cardoso; M\\u00e1rcia C. M. Marques; Martin Worbes; Sintia Valerio Kohler; Bruno H\\u00e9rault; E. N. Chidumayo; Elisha Elifuraha; Maria Raquel Kanieski; Fidel A. Roig; Robert Gliniars; Giselda Durigan; David M. Drew; Ligia Ferreira Fedele; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Lip Khoon Kho; J\\u00fcrgen Homeier; Mark Schulze; Vivian R. B. Maria; Julia Krepkowski; Timothy R. Baker; Vinicius Resende de Castro; Damien Bonal; Milton Eugene Lieberman; Paulo Cesar Botosso; David M. J. S. Bowman; Camille Couralet; Hellen Paredio Santana; Diana Lieberman; Rubens Koloski Chagas; Jos\\u00e9 P. Lemos-Filho; Jo\\u00e3o Lima Freitas J\\u00fanior; Anthony D. Griffiths; Naoki Okada; Aster Gebrekirstos; Luiz E. O. C. Arag\\u00e3o; Luiz E. O. C. Arag\\u00e3o; Gabriel Sebastian Becker; Yadvinder Malhi; Susanne Spannl; Tomaz Longhi Santos; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Mark Schulze; Timothy R. Baker; Jesus Julio Camarero; Oliver D\\u00fcnisch; Simone Aparecida Vieira; Marcos Miranda Toledo; Kaiyu Guan; Jos\\u00e9 Luis L\\u00f3pez Ayala; Michael D. Swaine; Anthony D. Griffiths; Jos\\u00e9 Pires Lemos-Filho; Deborah A. Clark; Vinicius Resende de Castro; Jos\\u00e9 Julio Toledo; Hooz Angela Mendivelso; Lynda D. Prior; Michael Ross; Diana Lieberman; Claudio Sergio Lisi; Carolina Volkmer de Castilho; Emmanuel N. Chidumayo; Rubens Koloski Chagas; Naoki Okada; Paulo Henrique da Silva Mauricio; Takeshi Toma; Karina Liana Lisboa Melga\\u00e7o; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Maria Raquel Kanieski; Damien Bonal; Camille Couralet; Fidel Alejandro Roig; Renato Marques; Magda Lea Bolzan Zanon; Fabien H. Wagner; Aster Gebrekirstos; Yadvinder Malhi; Lucy Rowland; Gr\\u00e9goire Vincent; Danilo Boanerges Souza; Julia Krepkowski; Hector Maza Chamba; Vivian R. B. Maria; Juan Ignacio Valdez Hern\\u00e1ndez; Milton Eugene Lieberman; Foster Irving Brown; Augusto C\\u00e9sar Franco; Steven F. Oberbauer; J\\u00e9rome Chave; Hellen Santana; Marisol Toledo; Robert Gliniars; Davi Rodrigo Rossatto; Afonso Figueiredo Filho; Tomaz Longhi Santos; Marcia C. M. Marques; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Helmut Dalitz; Giselda Durigan; Achim Br\\u00e4uning; Eduardo Eijji Maeda; Hans Beeckman; Williamar Rodrigues Silva; Pl\\u00ednio Barbosa Camargo; Jo\\u00e3o Lima Freitas J\\u00fanior; Rapha\\u00ebl P\\u00e9lissier; Wendeson Castro; Cl\\u00e9ment Stahl; Jennifer Koenig; Joseph J. O'Brien; Benjamin Brede; David M. J. S. Bowman; Luiz E. O. C. Arag\\u00e3o; Jean-Louis Devineau; Marcio Fedele; Fabr\\u00edcio Alvim Carvalho; Paulo Cesar Botosso; Mario Tomazello Filho; Fernanda C. G. Cardoso; Diogo Selhorst; Flavia Regina Capellotto Costa; Ervan Rutishauser; Sintia Valerio Kohler; Lawrence Mbwambo; J\\u00fcrgen Homeier; Liana O. Anderson; Ja\\u00e7anan Eloisa de Freitas Milani; Marcos Silveira; Brett P. Murphy; Edilson Consuelo de Oliveira; Franziska Volland; Franklin Galv\\u00e3o; Luciano de Souza Arruda; Martin Worbes; David M. Drew; Jan Verbesselt; Susanne Spannl; Ligia Ferreira Fedele; Lip Khoon Kho; Elisha Elifuraha; Gabriel Sebastian Becker; Vivien Rossi; Bruno H\\u00e9rault; James Grogan; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; Santo, Tomaz,; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; de Castilho, C. V.; Guan, K.; Mauricio, P. H. D.; Galvao, F.; Elifuraha, E.; Zanon, M. L. B.; Gliniars, R.; Herault, B.; Maeda, E. E.; Worbes, M.; Stahl, C.; Drew, D. M.; Santos, T. L.; Rossatto, D. R.; Rowland, L.; de Oliveira, E. C.; Toledo, J. J.; Arruda, L. D. S.; Figueiredo, A.; Ross, M.; Chave, J.; Clark, D. A.; Dalitz, H.; Volland, F.; Krepkowski, J.; Marques, M. C. M.; Milani, J. E. D.; Souza, D. B.; Franco, A. C.; Devineau, J. L.; Mendivelso, H. A.; Castro, W.; Toledo, M.; Grogan, J.; Kanieski, M. R.; Baker, T. R.; Brede, B.; Rutishauser, E.; Finger, C. A. G.; Prior, L. D.; Costa, F. R. C.; Silva, W. R.; Bowman, D. M. J. S.; Ayala, J. L. L.; Selhorst, D.; Becker, G. S.; Marques, R.; Aragao, L. E. O. C.; Hernandez, J. I. V.; Couralet, C.; Santana, H.; Malhi, Y.; Fedele, M.; Homeier, J.; Beeckman, H.; Oberbauer, S. F.; Gebrekirstos, A.; Kohler, S. V.; Vincent, Gr\\u00e9goire; de Castro, V. R.; Kho, L. K.; Murphy, B. P.; Koenig, J.; Melgaco, K. L. L.; Lieberman, D.; Freitas, J. L.; Brauning, A.; Tomazello, M.; Lieberman, M. E.; Maria, V. R. B.; Rossi, V.; Toledo, M. M.; Durigan, G.; Okada, N.; Griffiths, A. D.; Camarero, J. J.; Mbwambo, L.; Verbesselt, J.; Brown, F. I.; Schulze, M.; Cardoso, F. C. G.; Dunisch, O.; Fedele, L. F.; Vieira, S. A.; Silveira, M.; Graca, P. M. L. D.; Roig, F. A.; P\\u00e9lissier, Rapha\\u00ebl; Lisi, C. S.; Carvalho, F. A.; Spannl, S.; Chamba, H. M.; Botosso, P. C.; Chagas, R. K.; Lemos, J. P.; O'Brien, J. J.; Anderson, L. O.; Toma, T.; Swaine, M. D.; Wagner, F. H.; Bonal, D.; Camargo, P. B.; Chidumayo, E. N.; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Bowman, David M. J. S.; Oliveira, Edilson Consuelo; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; Lisi, Claudio Sergio; Gliniars, Robert; Silva Mauricio, Paulo Henrique; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Freitas Milani, Ja\\u00e7anan Eloisa; Spannl, Susanne; Tomazello Filho, Mario; Toledo, Marisol; Maeda, Eduardo Eijji; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Souza Arruda, Luciano; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; Castro, Vinicius Resende; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Longhi Santos, Tomaz; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Guan, K.; Elifuraha, E.; Zanon, M. L. B.; Gliniars, R.; Lemos-Filho, J. P.; Maeda, E. E.; Worbes, M.; Stahl, C.; Drew, D. M.; L\\u00f3pez Ayala, J. L.; Vincent, G.; Rossatto, D. R.; Rowland, L.; de Oliveira, E. C.; Freitas J\\u00fanior, J. L.; Toledo, J. J.; Longhi Santos, T.; Ross, M.; Chave, J.; Ferreira Fedele, L.; Clark, D. A.; Dalitz, H.; Volland, F.; Krepkowski, J.; Marques, M. C. M.; Franco, A. C.; Mendivelso, H. A.; Castro, W.; Toledo, M.; Grogan, J.; Kanieski, M. R.; Baker, T. R.; Arag\\u00e3o, L. E. O. C.; Brede, B.; Rutishauser, E.; Galv\\u00e3o, F.; de Freitas Milani, J. E.; Finger, C. A. G.; Prior, L. D.; Costa, F. R. C.; Silva, W. R.; Bowman, D. M. J. S.; Figueiredo Filho, A.; Selhorst, D.; Becker, G. S.; Marques, R.; Couralet, C.; Santana, H.; Malhi, Y.; Fedele, M.; Homeier, J.; Beeckman, H.; Oberbauer, S. F.; H\\u00e9rault, B.; Gebrekirstos, A.; Kohler, S. V.; Volkmer de Castilho, C.; Devineau, J.-L.; de Castro, V. R.; Kho, L. K.; Br\\u00e4uning, A.; Murphy, B. P.; Koenig, J.; Lieberman, D.; Gra\\u00e7a, P. M. L. D. A.; Lieberman, M. E.; Maria, V. R. B.; da Silva Mauricio, P. H.; Boanerges Souza, D.; Rossi, V.; Toledo, M. M.; Tomazello Filho, M.; D\\u00fcnisch, O.; Durigan, G.; Okada, N.; Griffiths, A. D.; Camarero, J. J.; Mbwambo, L.; Verbesselt, J.; Brown, F. I.; Schulze, M.; Cardoso, F. C. G.; P\\u00e9lissier, R.; Melga\\u00e7o, K. L. L.; de Souza Arruda, L.; Vieira, S. A.; Silveira, M.; Maza Chamba, H.; Roig, F. A.; Lisi, C. S.; Carvalho, F. A.; Spannl, S.; Botosso, P. C.; Chagas, R. K.; O'Brien, J. J.; Anderson, L. O.; Toma, T.; Valdez Hern\\u00e1ndez, J. I.; Swaine, M. D.; Wagner, F. H.; Bonal, D.; Camargo, P. B.; Chidumayo, E. N.; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Maria, Vivian R.B.; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Rossatto, Davi Rodrigo; Ferreira Fedele, Ligia; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Lima De Alencastro Gra\\u00e7a, Paulo Maur\\u00edcio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; De Souza Arruda, Luciano; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Cardoso, Fernanda C.G.; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; De Castro, Vinicius Resende; Marques, Marcia C.M.; Vincent, Gr\\u00e9goire; De Freitas Milani, Ja\\u00e7anan Eloisa; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Arag\\u00e3o, Luiz E.O.C.; Maza Chamba, Hector; Boanerges Souza, Danilo; Volland, Franziska; Lisi, Claudio Sergio; Gliniars, Robert; Bowman, David M.J.S.; Volkmer De Castilho, Carolina; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Spannl, Susanne; Tomazello Filho, Mario; Toledo, Marisol; Maeda, Eduardo Eijji; De Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Castro, Wendeson; Ross, Michael; Lemos-filho, Jos\\u00e9 Pires; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Drew, David M.; Da Silva Mauricio, Paulo Henrique; Longhi Santos, Tomaz; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; de Castilho, Carolina Volkmer; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Lima de Alencastro Graca, Paulo Maurcio; Botosso, Paulo Cesar; Capellotto Costa, Flavia Regina; Fedele, Ligia Ferreira; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Freitas Junior, Joao Lima; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Swaine, Michael D.; Becker, Gabriel Sebastian; Souza, Danilo Boanerges; Verbesselt, Jan; Guimaraes Finger, Cesar Augusto; Krepkowski, Julia; Prior, Lynda D.; Lemos-Filho, Jose Pires; de Freitas Milani, Jaanan Eloisa; Guan, Kaiyu; Clark, Deborah A.; Marques, Renato; de Arruda, Luciano Souza; Durigan, Giselda; Santos, Tomaz Longhi; Rossatto, Davi Rodrigo; Herault, Bruno; Camargo, Plnio Barbosa; Bolzan Zanon, Magda Lea; Vincent, Gregoire; Lisboa Melgaco, Karina Liana; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Chave, Jerome; Toledo, Marcos Miranda; Bowman, David M. J. S.; Anderson, Liana O.; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Kohler, Sintia Valerio; Elifuraha, Elisha; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Duenisch, Oliver; Braeuning, Achim; Santana, Hellen; Maza Chamba, Hector; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; da Silva Mauricio, Paulo Henrique; Gliniars, Robert; Valdez Hernandez, Juan Ignacio; Lieberman, Diana; Galvao, Franklin; Aragao, Luiz E. O. C.; Oberbauer, Steven F.; Dalitz, Helmut; Spannl, Susanne; Tomazello Filho, Mario; Toledo, Marisol; Carvalho, Fabricio Alvim; Homeier, Jurgen; Maeda, Eduardo Eijji; Franco, Augusto Cesar; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Lopez Ayala, Jose Luis; Ross, Michael; Rutishauser, Ervan; Alejandro Roig, Fidel; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; Toledo, Jose Julio; Kho, Lip Khoon; Koenig, Jennifer; Pelissier, Raphael; Fedele, Marcio; Julio Camarero, Jesus; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Angela Mendivelso, Hooz; Brown, Foster Irving; E. N. Chidumayo; J. J. Camarero; H. A. Mendivelso; S. V. Kohler; D. Lieberman; M. Toledo; A. D. Griffiths; M. D. Swaine; K. L. L. Melga\\u00e7o; S. A. Vieira; M. Ross; M. Schulze; G. S. Becker; L. K. Kho; E. C. de Oliveira; J. Verbesselt; Y. Malhi; M. Tomazello Filho; L. Ferreira Fedele; L. Mbwambo; F. A. Roig; J. Koenig; G. Vincent; F. H. Wagner; W. R. Silva; M. C. M. Marques; M. E. Lieberman; M. L. B. Zanon; A. Figueiredo Filho; J. L. L\\u00f3pez Ayala; L. de Souza Arruda; F. I. Brown; C. S. Lisi; D. Boanerges Souza; C. Couralet; H. Santana; J. Krepkowski; W. Castro; F. Volland; L. E. O. C. Arag\\u00e3o; T. Longhi Santos; C. Volkmer de Castilho; F. A. Carvalho; J. Chave; J. I. Valdez Hern\\u00e1ndez; D. A. Clark; M. Fedele; A. Br\\u00e4uning; M. Worbes; V. Rossi; V. R. B. Maria; J. Homeier; S. F. Oberbauer; J.-L. Devineau; H. Dalitz; K. Guan; J. E. de Freitas Milani; C. A. G. Finger; J. J. Toledo; P. M. L. D. A. Gra\\u00e7a; S. Spannl; L. O. Anderson; D. R. Rossatto; B. Brede; T. R. Baker; J. Grogan; M. Silveira; R. K. Chagas; G. Durigan; O. D\\u00fcnisch; D. M. J. S. Bowman; N. Okada; E. Elifuraha; L. D. Prior; V. R. de Castro; R. P\\u00e9lissier; L. Rowland; F. R. C. Costa; E. E. Maeda; F. Galv\\u00e3o; J. L. Freitas J\\u00fanior; J. J. O'Brien; B. H\\u00e9rault; H. Beeckman; R. Gliniars; J. P. Lemos-Filho; E. Rutishauser; D. Selhorst; A. Gebrekirstos; F. C. G. Cardoso; B. P. Murphy; C. Stahl; M. M. Toledo; H. Maza Chamba; P. H. da Silva Mauricio; P. C. Botosso; T. Toma; P. B. Camargo; R. Marques; D. M. Drew; D. Bonal; A. C. Franco; M. R. Kanieski; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Stahl, Clement; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Pelissier, Rapha\\u00ebl; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Herault, Bruno; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Bowman, David M. J. S.; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; da Silva Mauricio, Paulo Henrique; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Spannl, Susanne; Tomazello Filho, Mario; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Longhi Santos, Tomaz; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo\",\"subject_orig\":\"cycle du carbone\",\"oa_state\":1,\"url\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.367382118335057\",\"y\":\"0.397753425114482\",\"labels\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"subject\":\"0106 biological sciences\",\"title\":\"Conservative water management in the widespread conifer genus Callitris\",\"year\":\"2013-11-13\",\"publisher\":\"Oxford University Press (OUP)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"AoB PLANTS\",\"link\":\"https:\\/\\/doi.org\\/10.1093\\/aobpla\\/plt052\",\"fulltext\":\"\",\"paper_abstract\":\"Water management by woody species encompasses characters involved in seeking, transporting and evaporating water. Examples of adaptation of individual characters to water availability are common, but little is known about the adaptability of whole-plant water management. Here we use plant hydration and growth to examine variation in whole-plant water management characteristics within the conifer genus Callitris. Using four species that cover the environmental extremes in the Australian continent, we compare seasonal patterns of growth and hydration over 2 years to determine the extent to which species exhibit adaptive variation to the local environment. Detailed measurements of gas exchange in one species are used to produce a hydraulic model to predict changes in leaf water potential throughout the year. This same model, when applied to the remaining three species, provided a close representation of the measured patterns of water potential gradient at all sites, suggesting strong conservation in water management, a conclusion supported by carbon and oxygen isotope measurements in Callitris from across the continent. We conclude that despite its large range in terms of rainfall, Callitris has a conservative water management strategy, characterized by a high sensitivity of growth to rainfall and a delayed (anisohydric) closure of stomata during soil drying.\",\"doi\":\"10.1093\\/aobpla\\/plt052\",\"project_id\":\"FT100100237\",\"accessright\":\"Open Access\",\"authors\":\"Scott Nichols; David M. J. S. Bowman; Lynda D. Prior; Timothy J. Brodribb; Brett P. Murphy; Brett P. Murphy; Pauline F. Grierson; S. Nichols; T. J. Brodribb; P. F. Grierson; D. M. J. S. Bowman; B. P. Murphy; L. D. Prior; Brodribb, Timothy J.; Nichols, Scott; Bowman, David M. J. S.; Murphy, Brett P.; Grierson, Pauline F.; Prior, Lynda D.\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.268025677052877\",\"y\":\"0.18910176812401\",\"labels\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"subject\":\"13. Climate action\",\"title\":\"Are giant eucalypt forests rain forest?\",\"year\":\"2023-01-01\",\"publisher\":\"University Of Tasmania\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/doi.org\\/10.25959\\/23243075\",\"fulltext\":\"\",\"paper_abstract\":\"Forests dominated by giant eucalypts ( eucalypt species with the potential to attain heights exceeding 70m) occur along the Australian east coast in association with rain forest. These forests contribute significantly to the global carbon budget but their ecological classification suffers from ambiguities around the definition of rain forest. The belief that eucalypts are 'sclerophyllous' and therefore not rain forest is a subjective view that has led to problems with conservation policies and management strategies of giant eucalypt forests. Understanding these forests from a global and functional viewpoint is paramount for their effective management. Eucalyptus grandis-dominated giant eucalypt forests in the Wet Tropics of Australia serve as a case study. Observing that rain forest species continuously regenerate in the understories of these eucalypt forests and believing that rain forest incursion will lead to the local elimination of the giant eucalypts, land managers prescribe frequent, low intensity fires. This management strategy is contentious and not underpinned by robust ecological understanding. To resolve these classificatory problems around eucalypts occurring in rain forest, I take a multidisciplinary approach to address the specific question: Are giant eucalypt forests rain forests? To obtain an in depth understanding of the ecology of giant eucalypts and the forests they dominate, and to provide a global context for these systems, I synthesise over a century's worth of literature on these systems (Chapter 2). Based on these data I propose that giant eucalypts are ecologically akin to rain forest emergent pioneers with a unique dependence on fire for regeneration, and that their habitat should be considered a type of secondary rain forest. Using a GIS-based approach I investigate the landscape scale vegetation dynamics of rain forest and E. grandis forest in the Wet Tropics, where E. grandis forests are considered to be threatened (Chapter 3). Using a environmentally stratified sample of sites, I show that rain forest has expanded over the past 50 years, and that this expansion is most likely a response to a global driver such as increased atmospheric CO2 rather than with local environmental factors. Projective modelling of this rain forest expansion predicts that, even at the fastest estimated rate known for the region, it will be more than 2000 years before rain forest fully engulfs giant eucalypt forests. In Chapter 4, I present a seedling growth experiment to examine if the regeneration niche of E. grandis exhibits ecological convergence with that of well-studied temperate giant eucalypts. I show that E. grandis seedlings grow poorly in unburnt rain forest soils because of the unavailability of phosphorus. The addition of phosphorus lifts phosphorus-deficiency symptoms in seedlings in rain forest soils, and accords well with the idea of E. grandis being a rain forest pioneer with the unique requirement of fire as a disturbance mechanism to create suitable open habitats for regeneration. To contextualize the rain forest- giant eucalypt forest - savanna transitions in Australia from a functional and macroecological perspective, I present a plant functional trait analysis of representative plants across these vegetation transitions in both tropical and temperate Australia (Chapter 5). I show that both tropical and temperate giant eucalypt forest are functionally convergent with rain forest and not with savanna. These results suggest that a classification of giant eucalypt forest based on functional attributes of the whole forest will be more useful for management policy than the established classification based on canopy dominants. In conclusion (Chapter 6), the synthesis ofmy landscape ecology and functional biology data supports my overarching hypothesis that giant eucalypt forests are functionally and ecologically rain forests and should be managed as such. I discuss the implications of my research for the management of Wet Tropics giant eucalypt forest and recommend that E. grandis forest should be managed under a regime of total fire suppression. Given that rare natural fires can be expected to occur under this management, the resulting regime will mimic the inherently long fire return times of these systems.\",\"doi\":\"10.25959\\/23247668.v1\",\"project_id\":\"DP0878177\",\"accessright\":\"not available\",\"authors\":\"Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP\",\"subject_orig\":\"13. Climate action\",\"oa_state\":0,\"url\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.246040628440847\",\"y\":\"-0.167350749419719\",\"labels\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"subject\":\"0106 biological sciences\",\"title\":\"Humid tropical rain forest has expanded into eucalypt forest and savanna over the last 50 years\",\"year\":\"2011-11-24\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Ecology and Evolution\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1002\\/ece3.70\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/11343\\/264893\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003ETropical rain forest expansion and savanna woody vegetation thickening appear to be a global trend, but there remains uncertainty about whether there is a common set of global drivers. Using geographic information techniques, we analyzed aerial photography of five areas in the humid tropics of northeastern Queensland, Australia, taken in the 1950s and 2008, to determine if changes in rain forest extent match those reported for the Australian monsoon tropics using similar techniques. Mapping of the 1950s aerial photography showed that of the combined study area (64,430 ha), 63% was classified as eucalypt forests\\/woodland and 37% as rain forest. Our mapping revealed that although most boundaries remained stable, there was a net increase of 732 ha of the original rain forest area over the study period, and negligible conversion of rain forest to eucalypt forest\\/woodland. Statistical modeling, controlling for spatial autocorrelation, indicated distance from preexisting rain forest as the strongest determinant of rain forest expansion. Margin extension had a mean rate across the five sites of 0.6 m per decade. Expansion was greater in tall open forest types but also occurred in shorter, more flammable woodland vegetation types. No correlations were detected with other local variables (aspect, elevation, geology, topography, drainage). Using a geographically weighted mean rate of rain forest margin extension across the whole region, we predict that over 25% of tall open forest (a forest type of high conservation significance) would still remain after 2000 years of rain forest expansion. This slow replacement is due to the convoluted nature of the rain forest boundary and the irregular shape of the tall open forest patches. Our analyses point to the increased concentration of atmospheric CO\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003Eas the most likely global driver of indiscriminate rain forest expansion occurring in northeastern Australia, by increasing tree growth and thereby overriding the effects of fire disturbance.\u003C\\/jats:p\u003E\",\"doi\":\"10.1002\\/ece3.70\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"David Y. P. Tng; Gregor J. Sanders; Ellen Weber; Grant J. Williamson; Brett P. Murphy; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Gregor Sanders; Grant J. Williamson; Ellen Weber; David Y. P. Tng; David Y P, Tng; David M J S, Bowman; Brett P, Murphy; Ellen, Weber; Grant J, Williamson; Gregor, Sanders; Jeanette, Kemp; Murphy, Brett P; Williamson, Grant J; Tng, David Y P; Sanders, Gregor; Kemp, Jeanette; Bowman, David M J S; Weber, Ellen\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.226080980470218\",\"y\":\"-0.155664175951863\",\"labels\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"subject\":\"0301 basic medicine\",\"title\":\"Ancestral stomatal control results in a canalization of fern and lycophyte adaptation to drought\",\"year\":\"2013-02-20\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"New Phytologist\",\"link\":\"https:\\/\\/pubmed.ncbi.nlm.nih.gov\\/23421706\\/\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003ESummary\u003C\\/jats:title\u003E\u003Cjats:p\u003E \u003Cjats:list list-type=\\\"bullet\\\"\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003ELittle is known about how a predominantly passive hydraulic stomatal control in ferns and lycophytes might impact water use under stress. Ferns and lycophytes occupy a diverse array of habitats, from deserts to rainforest canopies, raising the question of whether stomatal behaviour is the same under all ecological strategies and imposes ecological or functional constraints on ferns and lycophytes.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EWe examined the stomatal response of a diverse sample of fern and lycophyte species to both soil and atmospheric water stress, assessing the foliar level of the hormone abscisic acid (\u003Cjats:styled-content style=\\\"fixed-case\\\"\u003EABA\u003C\\/jats:styled-content\u003E) over drought and recovery and the critical leaf water potential (\\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E) at which photosynthesis in droughted leaves failed to recover.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EThe stomata of all ferns and lycophytes showed very predictable responses to soil and atmospheric water deficit via \\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E, while stomatal closure was poorly correlated with changes in ABA. We found that all ferns closed stomata at very low levels of water stress and their survival afterwards was limited only by their capacitance and desiccation tolerance.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EFerns and lycophytes have constrained stomatal responses to soil and atmospheric water deficit as a consequence of a predominantly passive stomatal regulation. This results in a monotypic strategy in ferns and lycophytes under water stress.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003C\\/jats:list\u003E \u003C\\/jats:p\u003E\",\"doi\":\"10.1111\\/nph.12190\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.523766748428778\",\"y\":\"0.152693334034553\",\"labels\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"subject\":\"0106 biological sciences\",\"title\":\"Aborigine\\u2010managed forest, savanna and grassland: biome switching in montane eastern Australia\",\"year\":\"2014-04-10\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1111\\/jbi.12306\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/1885\\/74078\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003ETo assess hypotheses about the role of anthropogenic fire in the maintenance and origin of a fine\\u2010scale vegetation mosaic of rain forest, eucalypt savanna and grassland.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EBunya Mountains, subtropical eastern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EA time series of vegetation maps was compiled from historical and recent aerial photography and field surveys. Geospatial models were constructed of environmental domains for rain forest, savanna and grassland, and for areas of biome change. Grassland soils were analysed for carbon isotope ratios (\\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC), and radiocarbon (\u003Cjats:sup\u003E14\u003C\\/jats:sup\u003EC) dates were acquired for bulk samples from a range of depths.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EAnalysis revealed weak associations between topography and the distribution of rain forest, savanna and grassland, and their patterns of recent change. Grassland occupied an environmental domain intermediate between rain forest and savanna and was more than four times as likely to occur within a matrix of rain forest rather than savanna. There was a large proportional reduction in the area of both grassland (\\u221235%) and savanna (\\u221219%) between 1961 and 2006 because of the expansion of rain forest. However, the greater initial extent of savanna meant that the areal loss of savanna was an order of magnitude greater than for grassland (1433 vs. 146\\u00a0ha). There was no evidence of abrupt changes in \\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC in grassland soil profiles, indicating stability of the vegetation over the last 2000\\u00a0years.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThere is no simple gradient in \\u2018tree suitability\\u2019 from rain forest, through savanna, to treeless grassland on the Bunya Mountains. A general absence of fire since the 19th century has greatly reduced the extent of grassy savanna and grassland formations, to the advantage of rain forest. These results support the hypothesis that the vegetation mosaic on the Bunya Mountains is a cultural artefact and testament to millennia of skilful and persistent burning. We could not conclusively reject the hypothesis that the grasslands are Pleistocene relicts that have declined throughout the Holocene; nonetheless, an explanation more consistent with the evidence overall is that the grasslands must have had periods of expansion during the Holocene, probably as a consequence of severe fires that have destroyed patches of rain forest.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12306\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Butler, Don W.; Fensham, Rod; Murphy, Brett P.; Bury, Sarah J.; Bowman, David M. J. S.; Haberle, Simon; Brett P. Murphy; Sarah J. Bury; David M. J. S. Bowman; Simon G. Haberle; Don W. Butler; Roderick J. Fensham\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.214181365281173\",\"y\":\"-0.281557825509733\",\"labels\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"subject\":\"0106 biological sciences\",\"title\":\"Alternative stable states and the role of fire\\u2013vegetation\\u2013soil feedbacks in the temperate wilderness of southwest Tasmania\",\"year\":\"2011-11-06\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-011-9677-0\",\"fulltext\":\"\",\"paper_abstract\":\"Two ecological models have been put forward to explain the dynamics of fire-promoting and fire-sensitive vegetation in southwest Tasmania: the alternative stable states model of Jackson (in Proc Ecol Soc Aust 3:9\\u201316, 1968) and the sharpening switch model of Mount (in Search 10:180\\u2013186, 1979). Assessing the efficacy of these models requires high resolution spatio-temporal data on whether vegetation patterns are stable or dynamic across landscapes. We analysed ortho-rectified sequences of aerial photography and satellite imagery from 1948, 1988 and 2010 to detect decadal scale changes in forest and non-forest vegetation cover in southwest Tasmania. There was negligible change from forest to non-forest (\u003C0.05%) and only a modest change from non-forest to forest over the study period. Forest cover increased by 4.1% between 1948 and 1988, apparently due to the recovery of forest vegetation following stand-replacing fire prior to 1948. Forest cover increased by 0.8% between 1988 and 2010, reflecting the limited ability of forest to invade treeless areas. The two models include interactions between vegetation, fire and soil, which we investigated by analysing the chemical (phosphorus, nitrogen) and physical properties (clay, silt) of 128 soil samples collected across 34 forest\\u2013non-forest boundaries. Phosphorus in the upper horizon was typically lower in non-forest vegetation compared to forest vegetation, which is consistent with proposed fire\\u2013vegetation\\u2013soil feedbacks. Mineral horizons were dominated by sand, with low levels of clay under all vegetation types. Available field evidence lends support to the Jackson (1968) alternative stable states model as the most suitable model of vegetation dynamics on nutrient poor substrates in southwest Tasmania although modifications of the timeframes for transitions toward rainforest are required.\",\"doi\":\"10.1007\\/s10980-011-9677-0\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Samuel W. Wood; David M. J. S. Bowman; Sam W. Wood\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.363903148059666\",\"y\":\"-0.104475505046146\",\"labels\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"subject\":\"0106 biological sciences\",\"title\":\"Has global environmental change caused monsoon rainforests to expand in the Australian monsoon tropics?\",\"year\":\"2010-06-24\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-010-9496-8\",\"fulltext\":\"\",\"paper_abstract\":\"A large research program in the Australian monsoon tropics has concluded that monsoon rainforests have expanded within the savanna matrix, a trend that has been emulated throughout the tropics worldwide. The driver of the northern Australian trend was not resolved, but it was suggested to be linked to a long-term trend towards wetter climates, atmospheric CO2 enrichment, and changed fire regimes. We review these findings with particular consideration of its analytical and evidentiary basis and plausibility of the global change hypothesis. Field validation has largely demonstrated that the aerial photographic technique that underpinned the previous research is reliable enough to detect rainforest expansion. Statistical modelling demonstrated that the expansion is related to sites with regionally low fire activity, although models are of low explanatory power reflecting the sketchy historical records of fire and feral animal impacts. Field studies show that current fire regimes adjacent to expanding rainforest patches are causing populations of the native conifer Callitris intratropica, an obligate seeder, to crash. Therefore, it is unlikely that changes in fire regimes, which have been deleterious to other fire-sensitive taxa and plant communities in the region, are responsible for the rainforest expansion. We conclude that the expansion of monsoon rainforests is most plausibly linked to the current wetting trend or elevated CO2 concentration. Increases in either water availability or CO2 concentration can potentially overwhelm the negative feedback between fire and rainforest cover that is responsible for the meta-stability of monsoon rainforest boundaries. However, further research at the continental scale, using aerial photography, tree rings and other proxies, is required to evaluate this hypothesis.\",\"doi\":\"10.1007\\/s10980-010-9496-8\",\"project_id\":\"LP0346929\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Daniel S. Banfai; Brett P. Murphy; Brett P. Murphy; Daniel S. Banfai; David M. J. S. Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.188262242757116\",\"y\":\"-0.114417703128843\",\"labels\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"subject\":\"0301 basic medicine\",\"title\":\"Australia\\u2014A Model System for the Development of Pyrogeography\",\"year\":\"2011-04-01\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Fire Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.4996\\/fireecology.0701005\",\"fulltext\":\"\",\"paper_abstract\":\"We define pyrogeography as an integrative, multidisciplinary perspective of landscape fire, its ecological effects, and its relationships with human societies. Like biogeography, this program spans geographic scales from the local to the global, has an evolutionary frame, and thus a geological dimension. And, like other geographic disciplines, pyrogeography has a clear commitment to understanding the interrelationships between cultures and their environment. We illustrate our approach by considering the pyrogeography of Australia. We demonstrate how a long history of fire has had a pervasive influence on the continent\\u2019s biota. While Aborigines coexisted with flammable landscapes for millennia, contemporary Australian society is still learning to live in a land of fire.\",\"doi\":\"10.4996\\/fireecology.0701005\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Brett P. Murphy; David M. J. S. Bowman; Brett P. Murphy; David M. J. S. Bowman\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0561772020500714\",\"y\":\"0.441696304061327\",\"labels\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"subject\":\"0106 biological sciences\",\"title\":\"Fire regimes and woody biomass dynamics in Australian savannas\",\"year\":\"2013-08-30\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/10.1111\\/jbi.12204\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003EMany tropical savannas are undergoing a trend of increasing woody biomass, or \\u2018woody thickening\\u2019. Management to reduce fire frequency and intensity in savannas could substantially increase the amount of carbon stored in woody biomass. We addressed two questions: (1) are northern Australian savannas thickening; and (2) to what extent, and by what demographic processes, does fire affect woody biomass accumulation?\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EThree large national parks, covering 24,000\\u00a0km\u003Cjats:sup\u003E2\u003C\\/jats:sup\u003E, in monsoonal northern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EWe examined changes in woody biomass carbon stocks \\u2013 inferred from tree basal area and the density of woody understorey plants \\u2013 over a 10\\u2010year period in 136 savanna monitoring plots. We statistically assessed these changes in relation to fire frequency and severity. We used a meta\\u2010analysis to identify general trends in woody cover in Australian savannas over the last half\\u2010century.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EWoody biomass carbon stocks were relatively stable across the three national parks, but rates of change were statistically indistinguishable from earlier findings of a weak thickening trend. Change was negatively correlated with fire frequency, particularly the frequency of severe fires. High frequencies of severe fires decreased rates of accumulation of biomass by existing trees (through reductions in tree growth and death of individual stems), rather than whole\\u2010tree mortality and suppression of recruitment. However, across northern Australia, our meta\\u2010analysis identified a general, albeit weak, trend of woody thickening.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThe drivers of northern Australia's weak thickening trend are uncertain, but likely candidates include increasing atmospheric \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E concentration and water availability, and pastoral intensification. We demonstrate that changes to fire management have the potential to either increase or decrease rates of woody thickening relative to any underlying trend. Understanding how savanna fires affect woody biomass, and how fire effects are mediated by climate and \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E, are essential research priorities to predict the fate of savannas.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12204\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Caroline E. R. Lehmann; Caroline E. R. Lehmann; Brett P. Murphy; Brett P. Murphy; Caroline E. R. Lehmann; Jeremy Russell\\u2010Smith; Michael J. Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.250484439327965\",\"y\":\"-0.37778601916065\",\"labels\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"area_uri\":3,\"area\":\"0106 biological sciences\"},{\"id\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"subject\":\"0106 biological sciences\",\"title\":\"Population collapse of a Gondwanan conifer follows the loss of Indigenous fire regimes in a northern Australian savanna\",\"year\":\"2022-05-31\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Scientific Reports\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1038\\/s41598-022-12946-3\",\"fulltext\":\"http:\\/\\/purl.org\\/au-research\\/grants\\/arc\\/DP150101777\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003EColonialism has disrupted Indigenous socioecological systems around the globe, including those supported by intentional landscape burning. Because most disruptions happened centuries ago, our understanding of Indigenous fire management is largely inferential and open to debate. Here, we investigate the ecological consequences of the loss of traditional Aboriginal fire management on fire-exposed savannas on the Arnhem Plateau, northern Australia, using the fire-sensitive conifer \u003Cjats:italic\u003ECallitris intratropica\u003C\\/jats:italic\u003E as a bio-indicator. We contrast Kakadu National Park, where traditional Aboriginal fire management was severely disrupted during the early twentieth century following Aboriginal relocation to surrounding settlements, and an adjacent Aboriginal estate where traditional Aboriginal fire management endures. Since 2006, traditional Aboriginal fire management at this site has been overlaid by a program of broad-scale institutionalized burning in the early dry season, designed to reduce greenhouse emissions. Using remote sensing, field survey, and dendrochronology, we show that on the Aboriginal estate, \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E populations depend on the creation of a shifting patch mosaic of long unburned areas necessary for the recruitment of \u003Cjats:italic\u003EC. intratropica.\u003C\\/jats:italic\u003E However, the imposition of broad-scale fire management is disrupting this population patch dynamic. In Kakadu, there have been extreme declines of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E associated with widespread fires since the mid twentieth century and consequent proliferation of grass fuels. Fire management in Kakadu since 2007, designed to increase the size and abundance of patches of unburned vegetation, has not been able to reverse the population collapse of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E. Our study demonstrates that colonial processes including relocation of Indigenous people and institutional fire management can have deleterious consequences that are nearly irreversible because of hysteresis in \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E population dynamics.\u003C\\/jats:p\u003E\",\"doi\":\"10.1038\\/s41598-022-12946-3\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Bowman, DMJS; Williamson, GJ; Johnston, FH; Bowman, CJW; Murphy, BP; Roos, CI; Trauernicht, C; Rostron, J; Prior, LD; Bowman, DMJS; Prior, LD; Haverkamp, C; Rann, KD; Donald C. Franklin; Sean M. Bellairs; Pascale Taplin; Michael J. Lawes; Brook, B.; Prior, L.; Bowman, D.; Walsh, Angie; Bowman, David M. J. S.; Whitehead, Peter J.; Price, Owen; Rosanne D'Arrigo; Jonathan G. Palmer; Patrick J. Baker; Brittany Dahl; Declan Norrie; Kathryn Allen; Lynda D. Prior; David J. M. S. Bowman; Scott Nichols; Jonathan G. Palmer; Matthew Brookhouse; Ben J. French; David M. J. S. Bowman; David M. J. S. Bowman; Owen Price; Nichols, SC; MacDermott, HJ; Bowman, DMJS; Murphy, BP; Russell-Smith, Jeremy; Yibarbuk, D.; Cooke, P; Bowman, David M. J. S.; Jackson, DM; Whitehead, Peter J.; Fisher, Alaric; Godjuwa, C; Choquenot, D; David M. J. S. Bowman; Stuart Pearson; Kathryn Allen; Quan Hua; Brett P. Murphy; David M. J. S. Bowman; Talia E. Portner; Clay Trauernicht; Wanner, J\\u00fcrgen; Buchbauer, Gerhard; Jirovetz, Leopold; Schmidt, Erich; Bowman, David M. J. S.; Murphy, Brett P.; Roos, Christopher I.; Rostron, Joshua; Williamson, Grant J.; Johnston, Fay H.; Bowman, Clarence J. W.; Trauernicht, Clay; Prior, Lynda D.; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; David M J S, Bowman; Christopher I, Roos; Fay H, Johnston; Brett P, Murphy; Joshua, Rostron; Lynda D, Prior; Grant J, Williamson; Clay, Trauernicht; Clarence J W, Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0231958227792847\",\"y\":\"0.278514210389028\",\"labels\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"subject\":\"0301 basic medicine\",\"title\":\"Unique Responsiveness of Angiosperm Stomata to Elevated CO2 Explained by Calcium Signalling\",\"year\":\"2013-11-20\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0082057\",\"fulltext\":\"\",\"paper_abstract\":\"Angiosperm and conifer tree species respond differently when exposed to elevated CO2, with angiosperms found to dynamically reduce water loss while conifers appear insensitive. Such distinct responses are likely to affect competition between these tree groups as atmospheric CO2 concentration rises. Seeking the mechanism behind this globally important phenomenon we targeted the Ca(2+)-dependent signalling pathway, a mediator of stomatal closure in response to elevated CO2, as a possible explanation for the differentiation of stomatal behaviours. Sampling across the diversity of vascular plants including lycophytes, ferns, gymnosperms and angiosperms we show that only angiosperms possess the stomatal behaviour and prerequisite genetic coding, linked to Ca(2+)-dependent stomatal signalling. We conclude that the evolution of Ca(2+)-dependent stomatal signalling gives angiosperms adaptive benefits in terms of highly efficient water use, but that stomatal sensitivity to high CO2 may penalise angiosperm productivity relative to other plant groups in the current era of soaring atmospheric CO2.\",\"doi\":\"10.1371\\/journal.pone.0082057\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb; Brodribb, Timothy J.; McAdam, Scott A. M.; Timothy J Brodribb; Scott A M McAdam\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.543985837479226\",\"y\":\"0.0858289826142518\",\"labels\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"subject\":\"0106 biological sciences\",\"title\":\"Are the eucalypt and non-eucalypt components of Australian tropical savannas independent?\",\"year\":\"2010-11-10\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Oecologia\",\"link\":\"https:\\/\\/espace.cdu.edu.au\\/view\\/cdu:37682\",\"fulltext\":\"\",\"paper_abstract\":\"Eucalypts (Eucalyptus and Corymbia spp.) dominate (60%) the tree biomass of Australia's tropical savannas but account for only a fraction (28%) of the tree diversity. Because of their considerable biomass and adaptation to environmental stressors, such as fire, the eucalypts may drive tree dynamics in these savannas, possibly to the exclusion of non-eucalypts. We evaluated whether the eucalypt and non-eucalypt components in tropical savannas are dependent so that changes in one component are matched by opposite trends in the other. Using tree inventory data from 127 savanna sites across the rainfall and fire frequency gradients, we found that eucalypt and non-eucalypt basal area and species richness had a negative relationship. This relationship was maintained across the rainfall gradient, with rainfall having a positive effect on the basal area and species richness of both components, but with a greater effect in non-eucalypts. Fire frequency negatively affected basal area, but not species richness, although basal area and species richness of eucalypts and non-eucalypts did not differ in their response to fire. Rainfall appears to set the upper bounds to woody biomass in these mesic savannas, while fire maintains woody biomass below carrying capacity and facilitates coexistence of the components. The magnitude of the component responses, particularly for non-eucalypts, is determined by rainfall, but their dependence is likely due to their differential response to both rainfall and fire, but not to competition for resources. Thus, while eucalypts dominate biomass overall, at high rainfall sites non-eucalypt basal area and diversity are highest, especially where fire frequency is low.\",\"doi\":\"10.1007\\/s00442-010-1829-4\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Jeremy J. Midgley; Brett P. Murphy; J. Russell-Smith; M. J. Lawes; B. P. Murphy; J. J. Midgley; B P, Murphy; J, Russell-Smith; J J, Midgley; M J, Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.157225822455321\",\"y\":\"-0.438046176985289\",\"labels\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"area_uri\":3,\"area\":\"0106 biological sciences\"}]"} \ No newline at end of file +{"author":null,"documents":"[{\"id\":\"cd7f4151031b2611009b557a670eff6f\",\"subject\":\"EOSC\",\"title\":\"TRIPLE D 6.1 - Report on the General Interoperability Requirements\",\"year\":\"2020-01-01\",\"publisher\":\"\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"\",\"fulltext\":\"\",\"paper_abstract\":\"TRIPLE - Transforming Research Through Innovative Practices for Linked Interdisciplinary Exploration is a EU funded project under the INFRAEOSC-02-2019 - Prototyping new innovative services topic, which started in October 2019 and will end in March 2023. Its main objective is to design and develop a discovery platform for SSH, called GOTRIPLE. This deliverable is the main outcome of Task 6.1 which started at M4 at ends at M36, whose aim is to deal with the definition and the set-up of general TRIPLE's interoperability requirements, considering all the components which are composing the TRIPLE ecosystem (data, resources and tools). As preliminary results, we thus present here a general overview of the main EOSC interoperability requirements and specifications, both coming from a mapping of the EOSC Working Groups outputs, and of the most relevant results of EOSC related projects related to TRIPLE. We also attempt to provide TRIPLE's answers, proposals and solutions to the above mentioned requirements. The final picture presents different levels of precision, which depends on the fluidity of the EOSC definition on the one hand, and on the consequent fact that some implications are still unclear, and a discussion on the measures to address EOSC requirements is still on-going. While tackling interoperability, we introduce TRIPLE in its context in order to locate the GOTRIPLE platform in the EOSC frame, and more specifically in the SSH cluster of the EOSC (section 1). Section 2 defines the general interoperability requirements, starting with the software (2.2) and then presents an analysis of the main outputs released by the EOSC Working groups (2.3), taking into consideration as a general reference, the EOSC Interoperability Framework, and, more specifically, the FAIR and Architecture WGs documents (2.3.2, 2.3.4). These are the main guiding references for the design and realization of the EOSC, considering specifically interoperability. Section 2.3.3 illustrates how TRIPLE is translating into practice the FAIR requirements, while section 2.3.5 is focused on TRIPLE current decisions regarding the integration of the TRIPLE solution into the EOSC. To present an enriched scenario, the section includes as well a brief overview of other relevant outputs released by the EOSC WGs (Landscape, RoP, Sustainability and Skills and Training) (2.3.6). With the aim to provide a comprehensive analysis of the EOSC interoperability requirements, the WP6 partners have analyzed relevant deliverables produced by the main EOSC related projects as preparatory activity. The analysis was useful to understand the EOSC environment and its evolution in terms of interoperability and at the same time to understand which external deliverables have to be taken into consideration for the overall project development in TRIPLE. Section 3 includes a synthesis of this work, which is fully presented in Annex I. Section 4 - Conclusions and Outlook, outlines TRIPLE's the next steps to achieve interoperability and the strategies that will be adopted.\",\"doi\":\"\",\"project_id\":\"863420\",\"accessright\":\"Restricted\",\"authors\":\"Di Donato, Francesca; Lombardo, Tiziana; Breitfuss, Gert; Chen, Yin; Dumouchel, Suzanne; Eskevich, Maria; Gingold, Arnaud; Gorgaini, Elisa; Monachini, Monica; Moranville, Yoann; Ocansey, Joshua Tetteh; Thiel, Carsten; Tóth-Czifra, Erzsébet\",\"subject_orig\":\"EOSC\",\"oa_state\":0,\"url\":\"7f4151031b2611009b557a670eff6f\",\"cluster_labels\":\"EOSC catalogue, Triple deliverable d6, 2020 eosc-related projects\",\"x\":\"0.362224943438186\",\"y\":\"0.422189736530404\",\"labels\":\"\",\"area_uri\":9,\"area\":\"EOSC catalogue, Triple deliverable d6, 2020 eosc-related projects\"}]"} \ No newline at end of file diff --git a/local_dev/tools/insert_visualization.py b/local_dev/tools/insert_visualization.py index 66b6ec4a7..0e61766c2 100644 --- a/local_dev/tools/insert_visualization.py +++ b/local_dev/tools/insert_visualization.py @@ -10,7 +10,7 @@ def insert_visualization(vis_id): payload['vis_title'] = 'openaire' payload['vis_clean_query'] = 'DP0878177' payload['vis_query'] = 'DP0878177' - payload['vis_params'] = "{\"from\":\"1665-01-01\",\"to\":\"2022-06-21\",\"document_types\":[\"121\"],\"sorting\":\"most-relevant\",\"min_descsize\":\"300\"}" + payload['vis_params'] = "{\"project_id\":\"863420\",\"funder\":\"EC\",\"acronym\":\"TRIPLE\",\"title\":\"Transforming Research through Innovative Practices for Linked interdisciplinary Exploration\",\"start_date\":\"2019-10-01\",\"end_date\":\"2023-03-31\",\"special_clause\":\"false\",\"oa_mandate\":\"true\",\"organisations\":[{\"long_name\":\"OPEN ACCESS IN THE EUROPEAN AREA THROUGH SCHOLARLY COMMUNICATION\",\"name\":\"OPERAS\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::8e77235c99a60c0a1a3a21209ca0e0d9\",\"url\":\"23\",\"website\":\"https:\\\/\\\/www.operas-eu.org\\\/\"},{\"long_name\":\"CESSDA ERIC\",\"name\":\"CESSDA ERIC\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::89963b4d1d1aacf5e11126f162ced9d4\",\"url\":\"21\",\"website\":\"https:\\\/\\\/www.cessda.eu\"},{\"long_name\":\"National Research Council\",\"name\":\"CNR\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::d41cf6bd4ab1b1362a44397e0b95c975\",\"url\":\"1\",\"website\":\"http:\\\/\\\/cnr.it\"},{\"long_name\":\"Polish Academy of Sciences\",\"name\":\"PAN\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::f541cd098bd22df66e81d8b34a7238c2\",\"url\":\"11\",\"website\":\"http:\\\/\\\/www.english.pan.pl\\\/\"},{\"long_name\":\"ETHNIKO KENTRO TEKMIRIOSIS KAI ILEKTRONIKOU PERIECHOMENOU\",\"name\":\"NATIONAL DOCUMENTATION CENTER - EKT\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::d0053bbb2c9cb7695adfbe288607fb47\",\"url\":\"10\",\"website\":\"http:\\\/\\\/www.ekt.gr\"},{\"long_name\":\"MEOH\",\"name\":\"MEOH\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::b9a7cc1c6a9920dbe053d3efae57dbfe\",\"url\":\"15\",\"website\":\"http:\\\/\\\/www.meoh.io\"},{\"long_name\":\"University of Coimbra\",\"name\":\"University of 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a/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json +++ b/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json @@ -1 +1 @@ -{"author":null,"documents":"[{\"id\":\"cd7f4151031b2611009b557a670eff6f\",\"subject\":\"EOSC\",\"title\":\"TRIPLE D 6.1 - Report on the General Interoperability Requirements\",\"year\":\"2020-01-01\",\"publisher\":\"\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"\",\"fulltext\":\"\",\"paper_abstract\":\"TRIPLE - Transforming Research Through Innovative Practices for Linked Interdisciplinary Exploration is a EU funded project under the INFRAEOSC-02-2019 - Prototyping new innovative services topic, which started in October 2019 and will end in March 2023. Its main objective is to design and develop a discovery platform for SSH, called GOTRIPLE. This deliverable is the main outcome of Task 6.1 which started at M4 at ends at M36, whose aim is to deal with the definition and the set-up of general TRIPLE's interoperability requirements, considering all the components which are composing the TRIPLE ecosystem (data, resources and tools). As preliminary results, we thus present here a general overview of the main EOSC interoperability requirements and specifications, both coming from a mapping of the EOSC Working Groups outputs, and of the most relevant results of EOSC related projects related to TRIPLE. We also attempt to provide TRIPLE's answers, proposals and solutions to the above mentioned requirements. The final picture presents different levels of precision, which depends on the fluidity of the EOSC definition on the one hand, and on the consequent fact that some implications are still unclear, and a discussion on the measures to address EOSC requirements is still on-going. While tackling interoperability, we introduce TRIPLE in its context in order to locate the GOTRIPLE platform in the EOSC frame, and more specifically in the SSH cluster of the EOSC (section 1). Section 2 defines the general interoperability requirements, starting with the software (2.2) and then presents an analysis of the main outputs released by the EOSC Working groups (2.3), taking into consideration as a general reference, the EOSC Interoperability Framework, and, more specifically, the FAIR and Architecture WGs documents (2.3.2, 2.3.4). These are the main guiding references for the design and realization of the EOSC, considering specifically interoperability. Section 2.3.3 illustrates how TRIPLE is translating into practice the FAIR requirements, while section 2.3.5 is focused on TRIPLE current decisions regarding the integration of the TRIPLE solution into the EOSC. To present an enriched scenario, the section includes as well a brief overview of other relevant outputs released by the EOSC WGs (Landscape, RoP, Sustainability and Skills and Training) (2.3.6). With the aim to provide a comprehensive analysis of the EOSC interoperability requirements, the WP6 partners have analyzed relevant deliverables produced by the main EOSC related projects as preparatory activity. The analysis was useful to understand the EOSC environment and its evolution in terms of interoperability and at the same time to understand which external deliverables have to be taken into consideration for the overall project development in TRIPLE. Section 3 includes a synthesis of this work, which is fully presented in Annex I. Section 4 - Conclusions and Outlook, outlines TRIPLE's the next steps to achieve interoperability and the strategies that will be adopted.\",\"doi\":\"\",\"project_id\":\"863420\",\"accessright\":\"Restricted\",\"authors\":\"Di Donato, Francesca; Lombardo, Tiziana; Breitfuss, Gert; Chen, Yin; Dumouchel, Suzanne; Eskevich, Maria; Gingold, Arnaud; Gorgaini, Elisa; Monachini, Monica; Moranville, Yoann; Ocansey, Joshua Tetteh; Thiel, Carsten; Tóth-Czifra, Erzsébet\",\"subject_orig\":\"EOSC\",\"oa_state\":0,\"url\":\"7f4151031b2611009b557a670eff6f\",\"cluster_labels\":\"EOSC catalogue, Triple deliverable d6, 2020 eosc-related projects\",\"x\":\"0.362224943438186\",\"y\":\"0.422189736530404\",\"labels\":\"\",\"area_uri\":9,\"area\":\"EOSC catalogue, Triple deliverable d6, 2020 eosc-related projects\"}]"} \ No newline at end of file +{"author":null,"documents":"[{\"id\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"subject\":\"13. Climate action\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"European Geosciences Union\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"fulltext\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"paper_abstract\":\"The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121.\",\"doi\":\"\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Wagner, FH; H\\u00e9rault, B; Bonal, D; Stahl, C; Anderson, LO; Baker, TR; Sebastian Becker, G; Beeckman, H; Boanerges Souza, D; Cesar Botosso, P; Bowman, DMJS; Br\\u00e4uning, A; Brede, B; Irving Brown, F; Julio Camarero, J; Camargo, PB; Cardoso, FCG; Carvalho, FA; Castro, W; Koloski Chagas, R; Chave, J; Chidumayo, EN; Clark, DA; Regina Capellotto Costa, F; Couralet, C; Henrique Da Silva Mauricio, P; Dalitz, H; Resende De Castro, V; Milani, JEDF; Consuelo De Oliveira, E; De Souza Arruda, L; Devineau, JL; Drew, DM; D\\u00fcnisch, O; Durigan, G; Elifuraha, E; Fedele, M; Ferreira Fedele, L; Figueiredo Filho, A; Finger, CAG; C\\u00e9sar Franco, A; Jnior, LF; Galv\\u00e3o, F; Gebrekirstos, A; Gliniars, R; Maur\\u00edcio Lima De Alencastro Gra\\u00e7a, P; Griffiths, AD; Grogan, J; Guan, K; Homeier, J; Raquel Kanieski, M; Khoon Kho, L; Koenig, J; Valerio Kohler, S; Krepkowski, J; Lemos-Filho, JP; Lieberman, D; Eugene Lieberman, M; Sergio Lisi, C; Longhi Santos, T; Ayala, JLL; Eijji Maeda, E; Malhi, Y; Maria, VRB; Marques, MCM; Marques, R; Maza Chamba, H; Mbwambo, L; Liana Lisboa Melga\\u00e7o, K; Angela Mendivelso, H; Murphy, BP; O'Brien, JJ; F Oberbauer, S; Okada, N; Plissier, R; Prior, LD; Alejandro Roig, F; Ross, M; Rodrigo Rossatto, D; Rossi, V; Rowland, L; Rutishauser, E; Santana, H; Schulze, M; Selhorst, D; Rodrigues Silva, W; Silveira, M; Spannl, S; Swaine, MD; Toledo, JJ; Miranda Toledo, M; Toledo, M; Toma, T\",\"subject_orig\":\"13. Climate action\",\"oa_state\":1,\"url\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.395896433436244\",\"y\":\"0.169597229793406\",\"labels\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"subject\":\"0106 biological sciences\",\"title\":\"Plant Traits Demonstrate That Temperate and Tropical Giant Eucalypt Forests Are Ecologically Convergent with Rainforest Not Savanna\",\"year\":\"2013-12-17\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0084378\",\"fulltext\":\"\",\"paper_abstract\":\"Ecological theory differentiates rainforest and open vegetation in many regions as functionally divergent alternative stable states with transitional (ecotonal) vegetation between the two forming transient unstable states. This transitional vegetation is of considerable significance, not only as a test case for theories of vegetation dynamics, but also because this type of vegetation is of major economic importance, and is home to a suite of species of conservation significance, including the world's tallest flowering plants. We therefore created predictions of patterns in plant functional traits that would test the alternative stable states model of these systems. We measured functional traits of 128 trees and shrubs across tropical and temperate rainforest - open vegetation transitions in Australia, with giant eucalypt forests situated between these vegetation types. We analysed a set of functional traits: leaf carbon isotopes, leaf area, leaf mass per area, leaf slenderness, wood density, maximum height and bark thickness, using univariate and multivariate methods. For most traits, giant eucalypt forest was similar to rainforest, while rainforest, particularly tropical rainforest, was significantly different from the open vegetation. In multivariate analyses, tropical and temperate rainforest diverged functionally, and both segregated from open vegetation. Furthermore, the giant eucalypt forests overlapped in function with their respective rainforests. The two types of giant eucalypt forests also exhibited greater overall functional similarity to each other than to any of the open vegetation types. We conclude that tropical and temperate giant eucalypt forests are ecologically and functionally convergent. The lack of clear functional differentiation from rainforest suggests that giant eucalypt forests are unstable states within the basin of attraction of rainforest. Our results have important implications for giant eucalypt forest management.\",\"doi\":\"10.1371\\/journal.pone.0084378\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Greg J. Jordan; David Y. P. Tng; David M. J. S. Bowman; David M J S Bowman; David Y P Tng; Greg J Jordan; Tng, David Y. P.; Jordan, Greg J.; Bowman, David M. J. S.; David M. J. S. Bowman; David Y. P. Tng; Greg J. Jordan; David Y P, Tng; David M J S, Bowman; Greg J, Jordan\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.197639118307433\",\"y\":\"-0.0758870989288165\",\"labels\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"subject\":\"cycle du carbone\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"Copernicus GmbH\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Biogeosciences\",\"link\":\"https:\\/\\/hdl.handle.net\\/10067\\/1447620151162165141\",\"fulltext\":\"https:\\/\\/hal.univ-lorraine.fr\\/hal-01557759\\/document\",\"paper_abstract\":\"\u003Cjats:p\u003EAbstract. The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). 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Arag\\u00e3o; Gabriel Sebastian Becker; Yadvinder Malhi; Susanne Spannl; Tomaz Longhi Santos; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. 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Anderson; Ja\\u00e7anan Eloisa de Freitas Milani; Marcos Silveira; Brett P. Murphy; Edilson Consuelo de Oliveira; Franziska Volland; Franklin Galv\\u00e3o; Luciano de Souza Arruda; Martin Worbes; David M. Drew; Jan Verbesselt; Susanne Spannl; Ligia Ferreira Fedele; Lip Khoon Kho; Elisha Elifuraha; Gabriel Sebastian Becker; Vivien Rossi; Bruno H\\u00e9rault; James Grogan; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. 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V.; Guan, K.; Mauricio, P. H. D.; Galvao, F.; Elifuraha, E.; Zanon, M. L. B.; Gliniars, R.; Herault, B.; Maeda, E. E.; Worbes, M.; Stahl, C.; Drew, D. M.; Santos, T. L.; Rossatto, D. R.; Rowland, L.; de Oliveira, E. C.; Toledo, J. J.; Arruda, L. D. S.; Figueiredo, A.; Ross, M.; Chave, J.; Clark, D. A.; Dalitz, H.; Volland, F.; Krepkowski, J.; Marques, M. C. M.; Milani, J. E. D.; Souza, D. B.; Franco, A. C.; Devineau, J. L.; Mendivelso, H. A.; Castro, W.; Toledo, M.; Grogan, J.; Kanieski, M. R.; Baker, T. R.; Brede, B.; Rutishauser, E.; Finger, C. A. G.; Prior, L. D.; Costa, F. R. C.; Silva, W. R.; Bowman, D. M. J. S.; Ayala, J. L. L.; Selhorst, D.; Becker, G. S.; Marques, R.; Aragao, L. E. O. C.; Hernandez, J. I. V.; Couralet, C.; Santana, H.; Malhi, Y.; Fedele, M.; Homeier, J.; Beeckman, H.; Oberbauer, S. F.; Gebrekirstos, A.; Kohler, S. V.; Vincent, Gr\\u00e9goire; de Castro, V. R.; Kho, L. K.; Murphy, B. P.; Koenig, J.; Melgaco, K. L. L.; Lieberman, D.; Freitas, J. L.; Brauning, A.; Tomazello, M.; Lieberman, M. E.; Maria, V. R. B.; Rossi, V.; Toledo, M. M.; Durigan, G.; Okada, N.; Griffiths, A. D.; Camarero, J. J.; Mbwambo, L.; Verbesselt, J.; Brown, F. I.; Schulze, M.; Cardoso, F. C. G.; Dunisch, O.; Fedele, L. F.; Vieira, S. A.; Silveira, M.; Graca, P. M. L. D.; Roig, F. A.; P\\u00e9lissier, Rapha\\u00ebl; Lisi, C. S.; Carvalho, F. A.; Spannl, S.; Chamba, H. M.; Botosso, P. C.; Chagas, R. K.; Lemos, J. P.; O'Brien, J. J.; Anderson, L. O.; Toma, T.; Swaine, M. D.; Wagner, F. H.; Bonal, D.; Camargo, P. B.; Chidumayo, E. N.; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Bowman, David M. 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E.; Finger, C. A. G.; Prior, L. D.; Costa, F. R. C.; Silva, W. R.; Bowman, D. M. J. S.; Figueiredo Filho, A.; Selhorst, D.; Becker, G. S.; Marques, R.; Couralet, C.; Santana, H.; Malhi, Y.; Fedele, M.; Homeier, J.; Beeckman, H.; Oberbauer, S. F.; H\\u00e9rault, B.; Gebrekirstos, A.; Kohler, S. V.; Volkmer de Castilho, C.; Devineau, J.-L.; de Castro, V. R.; Kho, L. K.; Br\\u00e4uning, A.; Murphy, B. P.; Koenig, J.; Lieberman, D.; Gra\\u00e7a, P. M. L. D. A.; Lieberman, M. E.; Maria, V. R. B.; da Silva Mauricio, P. H.; Boanerges Souza, D.; Rossi, V.; Toledo, M. M.; Tomazello Filho, M.; D\\u00fcnisch, O.; Durigan, G.; Okada, N.; Griffiths, A. D.; Camarero, J. J.; Mbwambo, L.; Verbesselt, J.; Brown, F. I.; Schulze, M.; Cardoso, F. C. G.; P\\u00e9lissier, R.; Melga\\u00e7o, K. L. L.; de Souza Arruda, L.; Vieira, S. A.; Silveira, M.; Maza Chamba, H.; Roig, F. A.; Lisi, C. S.; Carvalho, F. A.; Spannl, S.; Botosso, P. C.; Chagas, R. K.; O'Brien, J. J.; Anderson, L. O.; Toma, T.; Valdez Hern\\u00e1ndez, J. I.; Swaine, M. D.; Wagner, F. H.; Bonal, D.; Camargo, P. B.; Chidumayo, E. 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O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; de Castilho, Carolina Volkmer; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Lima de Alencastro Graca, Paulo Maurcio; Botosso, Paulo Cesar; Capellotto Costa, Flavia Regina; Fedele, Ligia Ferreira; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Freitas Junior, Joao Lima; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Swaine, Michael D.; Becker, Gabriel Sebastian; Souza, Danilo Boanerges; Verbesselt, Jan; Guimaraes Finger, Cesar Augusto; Krepkowski, Julia; Prior, Lynda D.; Lemos-Filho, Jose Pires; de Freitas Milani, Jaanan Eloisa; Guan, Kaiyu; Clark, Deborah A.; Marques, Renato; de Arruda, Luciano Souza; Durigan, Giselda; Santos, Tomaz Longhi; Rossatto, Davi Rodrigo; Herault, Bruno; Camargo, Plnio Barbosa; Bolzan Zanon, Magda Lea; Vincent, Gregoire; Lisboa Melgaco, Karina Liana; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Chave, Jerome; Toledo, Marcos Miranda; Bowman, David M. J. S.; Anderson, Liana O.; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Kohler, Sintia Valerio; Elifuraha, Elisha; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Duenisch, Oliver; Braeuning, Achim; Santana, Hellen; Maza Chamba, Hector; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; da Silva Mauricio, Paulo Henrique; Gliniars, Robert; Valdez Hernandez, Juan Ignacio; Lieberman, Diana; Galvao, Franklin; Aragao, Luiz E. O. C.; Oberbauer, Steven F.; Dalitz, Helmut; Spannl, Susanne; Tomazello Filho, Mario; Toledo, Marisol; Carvalho, Fabricio Alvim; Homeier, Jurgen; Maeda, Eduardo Eijji; Franco, Augusto Cesar; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Lopez Ayala, Jose Luis; Ross, Michael; Rutishauser, Ervan; Alejandro Roig, Fidel; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; Toledo, Jose Julio; Kho, Lip Khoon; Koenig, Jennifer; Pelissier, Raphael; Fedele, Marcio; Julio Camarero, Jesus; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Angela Mendivelso, Hooz; Brown, Foster Irving; E. N. Chidumayo; J. J. Camarero; H. A. Mendivelso; S. V. Kohler; D. Lieberman; M. Toledo; A. D. Griffiths; M. D. Swaine; K. L. L. Melga\\u00e7o; S. A. Vieira; M. Ross; M. Schulze; G. S. Becker; L. K. Kho; E. C. de Oliveira; J. Verbesselt; Y. Malhi; M. Tomazello Filho; L. Ferreira Fedele; L. Mbwambo; F. A. Roig; J. Koenig; G. Vincent; F. H. Wagner; W. R. Silva; M. C. M. Marques; M. E. Lieberman; M. L. B. Zanon; A. Figueiredo Filho; J. L. L\\u00f3pez Ayala; L. de Souza Arruda; F. I. Brown; C. S. Lisi; D. Boanerges Souza; C. Couralet; H. Santana; J. Krepkowski; W. Castro; F. Volland; L. E. O. C. Arag\\u00e3o; T. Longhi Santos; C. Volkmer de Castilho; F. A. Carvalho; J. Chave; J. I. Valdez Hern\\u00e1ndez; D. A. Clark; M. Fedele; A. Br\\u00e4uning; M. Worbes; V. Rossi; V. R. B. Maria; J. Homeier; S. F. Oberbauer; J.-L. Devineau; H. Dalitz; K. Guan; J. E. de Freitas Milani; C. A. G. Finger; J. J. Toledo; P. M. L. D. A. Gra\\u00e7a; S. Spannl; L. O. Anderson; D. R. Rossatto; B. Brede; T. R. Baker; J. Grogan; M. Silveira; R. K. Chagas; G. Durigan; O. D\\u00fcnisch; D. M. J. S. Bowman; N. Okada; E. Elifuraha; L. D. Prior; V. R. de Castro; R. P\\u00e9lissier; L. Rowland; F. R. C. Costa; E. E. Maeda; F. Galv\\u00e3o; J. L. Freitas J\\u00fanior; J. J. O'Brien; B. H\\u00e9rault; H. Beeckman; R. Gliniars; J. P. Lemos-Filho; E. Rutishauser; D. Selhorst; A. Gebrekirstos; F. C. G. Cardoso; B. P. Murphy; C. Stahl; M. M. Toledo; H. Maza Chamba; P. H. da Silva Mauricio; P. C. Botosso; T. Toma; P. B. Camargo; R. Marques; D. M. Drew; D. Bonal; A. C. Franco; M. R. Kanieski; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Stahl, Clement; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Pelissier, Rapha\\u00ebl; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Herault, Bruno; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Bowman, David M. J. S.; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; da Silva Mauricio, Paulo Henrique; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Spannl, Susanne; Tomazello Filho, Mario; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Longhi Santos, Tomaz; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo\",\"subject_orig\":\"cycle du carbone\",\"oa_state\":1,\"url\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.367382118335057\",\"y\":\"0.397753425114482\",\"labels\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"subject\":\"0106 biological sciences\",\"title\":\"Conservative water management in the widespread conifer genus Callitris\",\"year\":\"2013-11-13\",\"publisher\":\"Oxford University Press (OUP)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"AoB PLANTS\",\"link\":\"https:\\/\\/doi.org\\/10.1093\\/aobpla\\/plt052\",\"fulltext\":\"\",\"paper_abstract\":\"Water management by woody species encompasses characters involved in seeking, transporting and evaporating water. Examples of adaptation of individual characters to water availability are common, but little is known about the adaptability of whole-plant water management. Here we use plant hydration and growth to examine variation in whole-plant water management characteristics within the conifer genus Callitris. Using four species that cover the environmental extremes in the Australian continent, we compare seasonal patterns of growth and hydration over 2 years to determine the extent to which species exhibit adaptive variation to the local environment. Detailed measurements of gas exchange in one species are used to produce a hydraulic model to predict changes in leaf water potential throughout the year. This same model, when applied to the remaining three species, provided a close representation of the measured patterns of water potential gradient at all sites, suggesting strong conservation in water management, a conclusion supported by carbon and oxygen isotope measurements in Callitris from across the continent. We conclude that despite its large range in terms of rainfall, Callitris has a conservative water management strategy, characterized by a high sensitivity of growth to rainfall and a delayed (anisohydric) closure of stomata during soil drying.\",\"doi\":\"10.1093\\/aobpla\\/plt052\",\"project_id\":\"FT100100237\",\"accessright\":\"Open Access\",\"authors\":\"Scott Nichols; David M. J. S. Bowman; Lynda D. Prior; Timothy J. Brodribb; Brett P. Murphy; Brett P. Murphy; Pauline F. Grierson; S. Nichols; T. J. Brodribb; P. F. Grierson; D. M. J. S. Bowman; B. P. Murphy; L. D. Prior; Brodribb, Timothy J.; Nichols, Scott; Bowman, David M. J. S.; Murphy, Brett P.; Grierson, Pauline F.; Prior, Lynda D.\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.268025677052877\",\"y\":\"0.18910176812401\",\"labels\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"subject\":\"13. Climate action\",\"title\":\"Are giant eucalypt forests rain forest?\",\"year\":\"2023-01-01\",\"publisher\":\"University Of Tasmania\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/doi.org\\/10.25959\\/23243075\",\"fulltext\":\"\",\"paper_abstract\":\"Forests dominated by giant eucalypts ( eucalypt species with the potential to attain heights exceeding 70m) occur along the Australian east coast in association with rain forest. These forests contribute significantly to the global carbon budget but their ecological classification suffers from ambiguities around the definition of rain forest. The belief that eucalypts are 'sclerophyllous' and therefore not rain forest is a subjective view that has led to problems with conservation policies and management strategies of giant eucalypt forests. Understanding these forests from a global and functional viewpoint is paramount for their effective management. Eucalyptus grandis-dominated giant eucalypt forests in the Wet Tropics of Australia serve as a case study. Observing that rain forest species continuously regenerate in the understories of these eucalypt forests and believing that rain forest incursion will lead to the local elimination of the giant eucalypts, land managers prescribe frequent, low intensity fires. This management strategy is contentious and not underpinned by robust ecological understanding. To resolve these classificatory problems around eucalypts occurring in rain forest, I take a multidisciplinary approach to address the specific question: Are giant eucalypt forests rain forests? To obtain an in depth understanding of the ecology of giant eucalypts and the forests they dominate, and to provide a global context for these systems, I synthesise over a century's worth of literature on these systems (Chapter 2). Based on these data I propose that giant eucalypts are ecologically akin to rain forest emergent pioneers with a unique dependence on fire for regeneration, and that their habitat should be considered a type of secondary rain forest. Using a GIS-based approach I investigate the landscape scale vegetation dynamics of rain forest and E. grandis forest in the Wet Tropics, where E. grandis forests are considered to be threatened (Chapter 3). Using a environmentally stratified sample of sites, I show that rain forest has expanded over the past 50 years, and that this expansion is most likely a response to a global driver such as increased atmospheric CO2 rather than with local environmental factors. Projective modelling of this rain forest expansion predicts that, even at the fastest estimated rate known for the region, it will be more than 2000 years before rain forest fully engulfs giant eucalypt forests. In Chapter 4, I present a seedling growth experiment to examine if the regeneration niche of E. grandis exhibits ecological convergence with that of well-studied temperate giant eucalypts. I show that E. grandis seedlings grow poorly in unburnt rain forest soils because of the unavailability of phosphorus. The addition of phosphorus lifts phosphorus-deficiency symptoms in seedlings in rain forest soils, and accords well with the idea of E. grandis being a rain forest pioneer with the unique requirement of fire as a disturbance mechanism to create suitable open habitats for regeneration. To contextualize the rain forest- giant eucalypt forest - savanna transitions in Australia from a functional and macroecological perspective, I present a plant functional trait analysis of representative plants across these vegetation transitions in both tropical and temperate Australia (Chapter 5). I show that both tropical and temperate giant eucalypt forest are functionally convergent with rain forest and not with savanna. These results suggest that a classification of giant eucalypt forest based on functional attributes of the whole forest will be more useful for management policy than the established classification based on canopy dominants. In conclusion (Chapter 6), the synthesis ofmy landscape ecology and functional biology data supports my overarching hypothesis that giant eucalypt forests are functionally and ecologically rain forests and should be managed as such. I discuss the implications of my research for the management of Wet Tropics giant eucalypt forest and recommend that E. grandis forest should be managed under a regime of total fire suppression. Given that rare natural fires can be expected to occur under this management, the resulting regime will mimic the inherently long fire return times of these systems.\",\"doi\":\"10.25959\\/23247668.v1\",\"project_id\":\"DP0878177\",\"accessright\":\"not available\",\"authors\":\"Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP\",\"subject_orig\":\"13. Climate action\",\"oa_state\":0,\"url\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.246040628440847\",\"y\":\"-0.167350749419719\",\"labels\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"subject\":\"0106 biological sciences\",\"title\":\"Humid tropical rain forest has expanded into eucalypt forest and savanna over the last 50 years\",\"year\":\"2011-11-24\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Ecology and Evolution\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1002\\/ece3.70\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/11343\\/264893\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003ETropical rain forest expansion and savanna woody vegetation thickening appear to be a global trend, but there remains uncertainty about whether there is a common set of global drivers. Using geographic information techniques, we analyzed aerial photography of five areas in the humid tropics of northeastern Queensland, Australia, taken in the 1950s and 2008, to determine if changes in rain forest extent match those reported for the Australian monsoon tropics using similar techniques. Mapping of the 1950s aerial photography showed that of the combined study area (64,430 ha), 63% was classified as eucalypt forests\\/woodland and 37% as rain forest. Our mapping revealed that although most boundaries remained stable, there was a net increase of 732 ha of the original rain forest area over the study period, and negligible conversion of rain forest to eucalypt forest\\/woodland. Statistical modeling, controlling for spatial autocorrelation, indicated distance from preexisting rain forest as the strongest determinant of rain forest expansion. Margin extension had a mean rate across the five sites of 0.6 m per decade. Expansion was greater in tall open forest types but also occurred in shorter, more flammable woodland vegetation types. No correlations were detected with other local variables (aspect, elevation, geology, topography, drainage). Using a geographically weighted mean rate of rain forest margin extension across the whole region, we predict that over 25% of tall open forest (a forest type of high conservation significance) would still remain after 2000 years of rain forest expansion. This slow replacement is due to the convoluted nature of the rain forest boundary and the irregular shape of the tall open forest patches. Our analyses point to the increased concentration of atmospheric CO\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003Eas the most likely global driver of indiscriminate rain forest expansion occurring in northeastern Australia, by increasing tree growth and thereby overriding the effects of fire disturbance.\u003C\\/jats:p\u003E\",\"doi\":\"10.1002\\/ece3.70\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"David Y. P. Tng; Gregor J. Sanders; Ellen Weber; Grant J. Williamson; Brett P. Murphy; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Gregor Sanders; Grant J. Williamson; Ellen Weber; David Y. P. Tng; David Y P, Tng; David M J S, Bowman; Brett P, Murphy; Ellen, Weber; Grant J, Williamson; Gregor, Sanders; Jeanette, Kemp; Murphy, Brett P; Williamson, Grant J; Tng, David Y P; Sanders, Gregor; Kemp, Jeanette; Bowman, David M J S; Weber, Ellen\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.226080980470218\",\"y\":\"-0.155664175951863\",\"labels\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"subject\":\"0301 basic medicine\",\"title\":\"Ancestral stomatal control results in a canalization of fern and lycophyte adaptation to drought\",\"year\":\"2013-02-20\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"New Phytologist\",\"link\":\"https:\\/\\/pubmed.ncbi.nlm.nih.gov\\/23421706\\/\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003ESummary\u003C\\/jats:title\u003E\u003Cjats:p\u003E \u003Cjats:list list-type=\\\"bullet\\\"\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003ELittle is known about how a predominantly passive hydraulic stomatal control in ferns and lycophytes might impact water use under stress. Ferns and lycophytes occupy a diverse array of habitats, from deserts to rainforest canopies, raising the question of whether stomatal behaviour is the same under all ecological strategies and imposes ecological or functional constraints on ferns and lycophytes.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EWe examined the stomatal response of a diverse sample of fern and lycophyte species to both soil and atmospheric water stress, assessing the foliar level of the hormone abscisic acid (\u003Cjats:styled-content style=\\\"fixed-case\\\"\u003EABA\u003C\\/jats:styled-content\u003E) over drought and recovery and the critical leaf water potential (\\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E) at which photosynthesis in droughted leaves failed to recover.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EThe stomata of all ferns and lycophytes showed very predictable responses to soil and atmospheric water deficit via \\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E, while stomatal closure was poorly correlated with changes in ABA. We found that all ferns closed stomata at very low levels of water stress and their survival afterwards was limited only by their capacitance and desiccation tolerance.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EFerns and lycophytes have constrained stomatal responses to soil and atmospheric water deficit as a consequence of a predominantly passive stomatal regulation. This results in a monotypic strategy in ferns and lycophytes under water stress.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003C\\/jats:list\u003E \u003C\\/jats:p\u003E\",\"doi\":\"10.1111\\/nph.12190\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.523766748428778\",\"y\":\"0.152693334034553\",\"labels\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"subject\":\"0106 biological sciences\",\"title\":\"Aborigine\\u2010managed forest, savanna and grassland: biome switching in montane eastern Australia\",\"year\":\"2014-04-10\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1111\\/jbi.12306\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/1885\\/74078\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003ETo assess hypotheses about the role of anthropogenic fire in the maintenance and origin of a fine\\u2010scale vegetation mosaic of rain forest, eucalypt savanna and grassland.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EBunya Mountains, subtropical eastern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EA time series of vegetation maps was compiled from historical and recent aerial photography and field surveys. Geospatial models were constructed of environmental domains for rain forest, savanna and grassland, and for areas of biome change. Grassland soils were analysed for carbon isotope ratios (\\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC), and radiocarbon (\u003Cjats:sup\u003E14\u003C\\/jats:sup\u003EC) dates were acquired for bulk samples from a range of depths.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EAnalysis revealed weak associations between topography and the distribution of rain forest, savanna and grassland, and their patterns of recent change. Grassland occupied an environmental domain intermediate between rain forest and savanna and was more than four times as likely to occur within a matrix of rain forest rather than savanna. There was a large proportional reduction in the area of both grassland (\\u221235%) and savanna (\\u221219%) between 1961 and 2006 because of the expansion of rain forest. However, the greater initial extent of savanna meant that the areal loss of savanna was an order of magnitude greater than for grassland (1433 vs. 146\\u00a0ha). There was no evidence of abrupt changes in \\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC in grassland soil profiles, indicating stability of the vegetation over the last 2000\\u00a0years.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThere is no simple gradient in \\u2018tree suitability\\u2019 from rain forest, through savanna, to treeless grassland on the Bunya Mountains. A general absence of fire since the 19th century has greatly reduced the extent of grassy savanna and grassland formations, to the advantage of rain forest. These results support the hypothesis that the vegetation mosaic on the Bunya Mountains is a cultural artefact and testament to millennia of skilful and persistent burning. We could not conclusively reject the hypothesis that the grasslands are Pleistocene relicts that have declined throughout the Holocene; nonetheless, an explanation more consistent with the evidence overall is that the grasslands must have had periods of expansion during the Holocene, probably as a consequence of severe fires that have destroyed patches of rain forest.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12306\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Butler, Don W.; Fensham, Rod; Murphy, Brett P.; Bury, Sarah J.; Bowman, David M. J. S.; Haberle, Simon; Brett P. Murphy; Sarah J. Bury; David M. J. S. Bowman; Simon G. Haberle; Don W. Butler; Roderick J. Fensham\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.214181365281173\",\"y\":\"-0.281557825509733\",\"labels\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"subject\":\"0106 biological sciences\",\"title\":\"Alternative stable states and the role of fire\\u2013vegetation\\u2013soil feedbacks in the temperate wilderness of southwest Tasmania\",\"year\":\"2011-11-06\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-011-9677-0\",\"fulltext\":\"\",\"paper_abstract\":\"Two ecological models have been put forward to explain the dynamics of fire-promoting and fire-sensitive vegetation in southwest Tasmania: the alternative stable states model of Jackson (in Proc Ecol Soc Aust 3:9\\u201316, 1968) and the sharpening switch model of Mount (in Search 10:180\\u2013186, 1979). Assessing the efficacy of these models requires high resolution spatio-temporal data on whether vegetation patterns are stable or dynamic across landscapes. We analysed ortho-rectified sequences of aerial photography and satellite imagery from 1948, 1988 and 2010 to detect decadal scale changes in forest and non-forest vegetation cover in southwest Tasmania. There was negligible change from forest to non-forest (\u003C0.05%) and only a modest change from non-forest to forest over the study period. Forest cover increased by 4.1% between 1948 and 1988, apparently due to the recovery of forest vegetation following stand-replacing fire prior to 1948. Forest cover increased by 0.8% between 1988 and 2010, reflecting the limited ability of forest to invade treeless areas. The two models include interactions between vegetation, fire and soil, which we investigated by analysing the chemical (phosphorus, nitrogen) and physical properties (clay, silt) of 128 soil samples collected across 34 forest\\u2013non-forest boundaries. Phosphorus in the upper horizon was typically lower in non-forest vegetation compared to forest vegetation, which is consistent with proposed fire\\u2013vegetation\\u2013soil feedbacks. Mineral horizons were dominated by sand, with low levels of clay under all vegetation types. Available field evidence lends support to the Jackson (1968) alternative stable states model as the most suitable model of vegetation dynamics on nutrient poor substrates in southwest Tasmania although modifications of the timeframes for transitions toward rainforest are required.\",\"doi\":\"10.1007\\/s10980-011-9677-0\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Samuel W. Wood; David M. J. S. Bowman; Sam W. Wood\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.363903148059666\",\"y\":\"-0.104475505046146\",\"labels\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"subject\":\"0106 biological sciences\",\"title\":\"Has global environmental change caused monsoon rainforests to expand in the Australian monsoon tropics?\",\"year\":\"2010-06-24\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-010-9496-8\",\"fulltext\":\"\",\"paper_abstract\":\"A large research program in the Australian monsoon tropics has concluded that monsoon rainforests have expanded within the savanna matrix, a trend that has been emulated throughout the tropics worldwide. The driver of the northern Australian trend was not resolved, but it was suggested to be linked to a long-term trend towards wetter climates, atmospheric CO2 enrichment, and changed fire regimes. We review these findings with particular consideration of its analytical and evidentiary basis and plausibility of the global change hypothesis. Field validation has largely demonstrated that the aerial photographic technique that underpinned the previous research is reliable enough to detect rainforest expansion. Statistical modelling demonstrated that the expansion is related to sites with regionally low fire activity, although models are of low explanatory power reflecting the sketchy historical records of fire and feral animal impacts. Field studies show that current fire regimes adjacent to expanding rainforest patches are causing populations of the native conifer Callitris intratropica, an obligate seeder, to crash. Therefore, it is unlikely that changes in fire regimes, which have been deleterious to other fire-sensitive taxa and plant communities in the region, are responsible for the rainforest expansion. We conclude that the expansion of monsoon rainforests is most plausibly linked to the current wetting trend or elevated CO2 concentration. Increases in either water availability or CO2 concentration can potentially overwhelm the negative feedback between fire and rainforest cover that is responsible for the meta-stability of monsoon rainforest boundaries. However, further research at the continental scale, using aerial photography, tree rings and other proxies, is required to evaluate this hypothesis.\",\"doi\":\"10.1007\\/s10980-010-9496-8\",\"project_id\":\"LP0346929\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Daniel S. Banfai; Brett P. Murphy; Brett P. Murphy; Daniel S. Banfai; David M. J. S. Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.188262242757116\",\"y\":\"-0.114417703128843\",\"labels\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"subject\":\"0301 basic medicine\",\"title\":\"Australia\\u2014A Model System for the Development of Pyrogeography\",\"year\":\"2011-04-01\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Fire Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.4996\\/fireecology.0701005\",\"fulltext\":\"\",\"paper_abstract\":\"We define pyrogeography as an integrative, multidisciplinary perspective of landscape fire, its ecological effects, and its relationships with human societies. Like biogeography, this program spans geographic scales from the local to the global, has an evolutionary frame, and thus a geological dimension. And, like other geographic disciplines, pyrogeography has a clear commitment to understanding the interrelationships between cultures and their environment. We illustrate our approach by considering the pyrogeography of Australia. We demonstrate how a long history of fire has had a pervasive influence on the continent\\u2019s biota. While Aborigines coexisted with flammable landscapes for millennia, contemporary Australian society is still learning to live in a land of fire.\",\"doi\":\"10.4996\\/fireecology.0701005\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Brett P. Murphy; David M. J. S. Bowman; Brett P. Murphy; David M. J. S. Bowman\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0561772020500714\",\"y\":\"0.441696304061327\",\"labels\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"subject\":\"0106 biological sciences\",\"title\":\"Fire regimes and woody biomass dynamics in Australian savannas\",\"year\":\"2013-08-30\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/10.1111\\/jbi.12204\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003EMany tropical savannas are undergoing a trend of increasing woody biomass, or \\u2018woody thickening\\u2019. Management to reduce fire frequency and intensity in savannas could substantially increase the amount of carbon stored in woody biomass. We addressed two questions: (1) are northern Australian savannas thickening; and (2) to what extent, and by what demographic processes, does fire affect woody biomass accumulation?\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EThree large national parks, covering 24,000\\u00a0km\u003Cjats:sup\u003E2\u003C\\/jats:sup\u003E, in monsoonal northern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EWe examined changes in woody biomass carbon stocks \\u2013 inferred from tree basal area and the density of woody understorey plants \\u2013 over a 10\\u2010year period in 136 savanna monitoring plots. We statistically assessed these changes in relation to fire frequency and severity. We used a meta\\u2010analysis to identify general trends in woody cover in Australian savannas over the last half\\u2010century.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EWoody biomass carbon stocks were relatively stable across the three national parks, but rates of change were statistically indistinguishable from earlier findings of a weak thickening trend. Change was negatively correlated with fire frequency, particularly the frequency of severe fires. High frequencies of severe fires decreased rates of accumulation of biomass by existing trees (through reductions in tree growth and death of individual stems), rather than whole\\u2010tree mortality and suppression of recruitment. However, across northern Australia, our meta\\u2010analysis identified a general, albeit weak, trend of woody thickening.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThe drivers of northern Australia's weak thickening trend are uncertain, but likely candidates include increasing atmospheric \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E concentration and water availability, and pastoral intensification. We demonstrate that changes to fire management have the potential to either increase or decrease rates of woody thickening relative to any underlying trend. Understanding how savanna fires affect woody biomass, and how fire effects are mediated by climate and \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E, are essential research priorities to predict the fate of savannas.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12204\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Caroline E. R. Lehmann; Caroline E. R. Lehmann; Brett P. Murphy; Brett P. Murphy; Caroline E. R. Lehmann; Jeremy Russell\\u2010Smith; Michael J. Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.250484439327965\",\"y\":\"-0.37778601916065\",\"labels\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"area_uri\":3,\"area\":\"0106 biological sciences\"},{\"id\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"subject\":\"0106 biological sciences\",\"title\":\"Population collapse of a Gondwanan conifer follows the loss of Indigenous fire regimes in a northern Australian savanna\",\"year\":\"2022-05-31\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Scientific Reports\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1038\\/s41598-022-12946-3\",\"fulltext\":\"http:\\/\\/purl.org\\/au-research\\/grants\\/arc\\/DP150101777\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003EColonialism has disrupted Indigenous socioecological systems around the globe, including those supported by intentional landscape burning. Because most disruptions happened centuries ago, our understanding of Indigenous fire management is largely inferential and open to debate. Here, we investigate the ecological consequences of the loss of traditional Aboriginal fire management on fire-exposed savannas on the Arnhem Plateau, northern Australia, using the fire-sensitive conifer \u003Cjats:italic\u003ECallitris intratropica\u003C\\/jats:italic\u003E as a bio-indicator. We contrast Kakadu National Park, where traditional Aboriginal fire management was severely disrupted during the early twentieth century following Aboriginal relocation to surrounding settlements, and an adjacent Aboriginal estate where traditional Aboriginal fire management endures. Since 2006, traditional Aboriginal fire management at this site has been overlaid by a program of broad-scale institutionalized burning in the early dry season, designed to reduce greenhouse emissions. Using remote sensing, field survey, and dendrochronology, we show that on the Aboriginal estate, \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E populations depend on the creation of a shifting patch mosaic of long unburned areas necessary for the recruitment of \u003Cjats:italic\u003EC. intratropica.\u003C\\/jats:italic\u003E However, the imposition of broad-scale fire management is disrupting this population patch dynamic. In Kakadu, there have been extreme declines of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E associated with widespread fires since the mid twentieth century and consequent proliferation of grass fuels. Fire management in Kakadu since 2007, designed to increase the size and abundance of patches of unburned vegetation, has not been able to reverse the population collapse of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E. Our study demonstrates that colonial processes including relocation of Indigenous people and institutional fire management can have deleterious consequences that are nearly irreversible because of hysteresis in \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E population dynamics.\u003C\\/jats:p\u003E\",\"doi\":\"10.1038\\/s41598-022-12946-3\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Bowman, DMJS; Williamson, GJ; Johnston, FH; Bowman, CJW; Murphy, BP; Roos, CI; Trauernicht, C; Rostron, J; Prior, LD; Bowman, DMJS; Prior, LD; Haverkamp, C; Rann, KD; Donald C. Franklin; Sean M. Bellairs; Pascale Taplin; Michael J. Lawes; Brook, B.; Prior, L.; Bowman, D.; Walsh, Angie; Bowman, David M. J. S.; Whitehead, Peter J.; Price, Owen; Rosanne D'Arrigo; Jonathan G. Palmer; Patrick J. Baker; Brittany Dahl; Declan Norrie; Kathryn Allen; Lynda D. Prior; David J. M. S. Bowman; Scott Nichols; Jonathan G. Palmer; Matthew Brookhouse; Ben J. French; David M. J. S. Bowman; David M. J. S. Bowman; Owen Price; Nichols, SC; MacDermott, HJ; Bowman, DMJS; Murphy, BP; Russell-Smith, Jeremy; Yibarbuk, D.; Cooke, P; Bowman, David M. J. S.; Jackson, DM; Whitehead, Peter J.; Fisher, Alaric; Godjuwa, C; Choquenot, D; David M. J. S. Bowman; Stuart Pearson; Kathryn Allen; Quan Hua; Brett P. Murphy; David M. J. S. Bowman; Talia E. Portner; Clay Trauernicht; Wanner, J\\u00fcrgen; Buchbauer, Gerhard; Jirovetz, Leopold; Schmidt, Erich; Bowman, David M. J. S.; Murphy, Brett P.; Roos, Christopher I.; Rostron, Joshua; Williamson, Grant J.; Johnston, Fay H.; Bowman, Clarence J. W.; Trauernicht, Clay; Prior, Lynda D.; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; David M J S, Bowman; Christopher I, Roos; Fay H, Johnston; Brett P, Murphy; Joshua, Rostron; Lynda D, Prior; Grant J, Williamson; Clay, Trauernicht; Clarence J W, Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0231958227792847\",\"y\":\"0.278514210389028\",\"labels\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"subject\":\"0301 basic medicine\",\"title\":\"Unique Responsiveness of Angiosperm Stomata to Elevated CO2 Explained by Calcium Signalling\",\"year\":\"2013-11-20\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0082057\",\"fulltext\":\"\",\"paper_abstract\":\"Angiosperm and conifer tree species respond differently when exposed to elevated CO2, with angiosperms found to dynamically reduce water loss while conifers appear insensitive. Such distinct responses are likely to affect competition between these tree groups as atmospheric CO2 concentration rises. Seeking the mechanism behind this globally important phenomenon we targeted the Ca(2+)-dependent signalling pathway, a mediator of stomatal closure in response to elevated CO2, as a possible explanation for the differentiation of stomatal behaviours. Sampling across the diversity of vascular plants including lycophytes, ferns, gymnosperms and angiosperms we show that only angiosperms possess the stomatal behaviour and prerequisite genetic coding, linked to Ca(2+)-dependent stomatal signalling. We conclude that the evolution of Ca(2+)-dependent stomatal signalling gives angiosperms adaptive benefits in terms of highly efficient water use, but that stomatal sensitivity to high CO2 may penalise angiosperm productivity relative to other plant groups in the current era of soaring atmospheric CO2.\",\"doi\":\"10.1371\\/journal.pone.0082057\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb; Brodribb, Timothy J.; McAdam, Scott A. M.; Timothy J Brodribb; Scott A M McAdam\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.543985837479226\",\"y\":\"0.0858289826142518\",\"labels\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"subject\":\"0106 biological sciences\",\"title\":\"Are the eucalypt and non-eucalypt components of Australian tropical savannas independent?\",\"year\":\"2010-11-10\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Oecologia\",\"link\":\"https:\\/\\/espace.cdu.edu.au\\/view\\/cdu:37682\",\"fulltext\":\"\",\"paper_abstract\":\"Eucalypts (Eucalyptus and Corymbia spp.) dominate (60%) the tree biomass of Australia's tropical savannas but account for only a fraction (28%) of the tree diversity. Because of their considerable biomass and adaptation to environmental stressors, such as fire, the eucalypts may drive tree dynamics in these savannas, possibly to the exclusion of non-eucalypts. We evaluated whether the eucalypt and non-eucalypt components in tropical savannas are dependent so that changes in one component are matched by opposite trends in the other. Using tree inventory data from 127 savanna sites across the rainfall and fire frequency gradients, we found that eucalypt and non-eucalypt basal area and species richness had a negative relationship. This relationship was maintained across the rainfall gradient, with rainfall having a positive effect on the basal area and species richness of both components, but with a greater effect in non-eucalypts. Fire frequency negatively affected basal area, but not species richness, although basal area and species richness of eucalypts and non-eucalypts did not differ in their response to fire. Rainfall appears to set the upper bounds to woody biomass in these mesic savannas, while fire maintains woody biomass below carrying capacity and facilitates coexistence of the components. The magnitude of the component responses, particularly for non-eucalypts, is determined by rainfall, but their dependence is likely due to their differential response to both rainfall and fire, but not to competition for resources. Thus, while eucalypts dominate biomass overall, at high rainfall sites non-eucalypt basal area and diversity are highest, especially where fire frequency is low.\",\"doi\":\"10.1007\\/s00442-010-1829-4\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Jeremy J. Midgley; Brett P. Murphy; J. Russell-Smith; M. J. Lawes; B. P. Murphy; J. J. Midgley; B P, Murphy; J, Russell-Smith; J J, Midgley; M J, Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.157225822455321\",\"y\":\"-0.438046176985289\",\"labels\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"area_uri\":3,\"area\":\"0106 biological sciences\"}]"} \ No newline at end of file From 1b0848f0ef043cd00daae0b1d87c0ddb6fa84fa3 Mon Sep 17 00:00:00 2001 From: andrei Date: Wed, 3 Dec 2025 12:35:01 +0100 Subject: [PATCH 08/11] refactoring: insertion files structure --- .../9d4dc6b920d1e2cc08a741f7c56821db.json | 1 - .../9d4dc6b920d1e2cc08a741f7c56821db.json | 3 ++ .../tools/db-insertion/OpenAIRE/config.json | 15 ++++++ local_dev/tools/db-insertion/insert.py | 49 +++++++++++++++++++ local_dev/tools/insert_visualization.py | 31 ------------ 5 files changed, 67 insertions(+), 32 deletions(-) delete mode 100644 local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json create mode 100644 local_dev/tools/db-insertion/OpenAIRE/9d4dc6b920d1e2cc08a741f7c56821db.json create mode 100644 local_dev/tools/db-insertion/OpenAIRE/config.json create mode 100644 local_dev/tools/db-insertion/insert.py delete mode 100644 local_dev/tools/insert_visualization.py diff --git a/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json b/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json deleted file mode 100644 index dbb3ee6f4..000000000 --- a/local_dev/tools/9d4dc6b920d1e2cc08a741f7c56821db.json +++ /dev/null @@ -1 +0,0 @@ -{"author":null,"documents":"[{\"id\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"subject\":\"13. Climate action\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"European Geosciences Union\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"fulltext\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"paper_abstract\":\"The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121.\",\"doi\":\"\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Wagner, FH; H\\u00e9rault, B; Bonal, D; Stahl, C; Anderson, LO; Baker, TR; Sebastian Becker, G; Beeckman, H; Boanerges Souza, D; Cesar Botosso, P; Bowman, DMJS; Br\\u00e4uning, A; Brede, B; Irving Brown, F; Julio Camarero, J; Camargo, PB; Cardoso, FCG; Carvalho, FA; Castro, W; Koloski Chagas, R; Chave, J; Chidumayo, EN; Clark, DA; Regina Capellotto Costa, F; Couralet, C; Henrique Da Silva Mauricio, P; Dalitz, H; Resende De Castro, V; Milani, JEDF; Consuelo De Oliveira, E; De Souza Arruda, L; Devineau, JL; Drew, DM; D\\u00fcnisch, O; Durigan, G; Elifuraha, E; Fedele, M; Ferreira Fedele, L; Figueiredo Filho, A; Finger, CAG; C\\u00e9sar Franco, A; Jnior, LF; Galv\\u00e3o, F; Gebrekirstos, A; Gliniars, R; Maur\\u00edcio Lima De Alencastro Gra\\u00e7a, P; Griffiths, AD; Grogan, J; Guan, K; Homeier, J; Raquel Kanieski, M; Khoon Kho, L; Koenig, J; Valerio Kohler, S; Krepkowski, J; Lemos-Filho, JP; Lieberman, D; Eugene Lieberman, M; Sergio Lisi, C; Longhi Santos, T; Ayala, JLL; Eijji Maeda, E; Malhi, Y; Maria, VRB; Marques, MCM; Marques, R; Maza Chamba, H; Mbwambo, L; Liana Lisboa Melga\\u00e7o, K; Angela Mendivelso, H; Murphy, BP; O'Brien, JJ; F Oberbauer, S; Okada, N; Plissier, R; Prior, LD; Alejandro Roig, F; Ross, M; Rodrigo Rossatto, D; Rossi, V; Rowland, L; Rutishauser, E; Santana, H; Schulze, M; Selhorst, D; Rodrigues Silva, W; Silveira, M; Spannl, S; Swaine, MD; Toledo, JJ; Miranda Toledo, M; Toledo, M; Toma, T\",\"subject_orig\":\"13. Climate action\",\"oa_state\":1,\"url\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.395896433436244\",\"y\":\"0.169597229793406\",\"labels\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"subject\":\"0106 biological sciences\",\"title\":\"Plant Traits Demonstrate That Temperate and Tropical Giant Eucalypt Forests Are Ecologically Convergent with Rainforest Not Savanna\",\"year\":\"2013-12-17\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0084378\",\"fulltext\":\"\",\"paper_abstract\":\"Ecological theory differentiates rainforest and open vegetation in many regions as functionally divergent alternative stable states with transitional (ecotonal) vegetation between the two forming transient unstable states. This transitional vegetation is of considerable significance, not only as a test case for theories of vegetation dynamics, but also because this type of vegetation is of major economic importance, and is home to a suite of species of conservation significance, including the world's tallest flowering plants. We therefore created predictions of patterns in plant functional traits that would test the alternative stable states model of these systems. We measured functional traits of 128 trees and shrubs across tropical and temperate rainforest - open vegetation transitions in Australia, with giant eucalypt forests situated between these vegetation types. We analysed a set of functional traits: leaf carbon isotopes, leaf area, leaf mass per area, leaf slenderness, wood density, maximum height and bark thickness, using univariate and multivariate methods. For most traits, giant eucalypt forest was similar to rainforest, while rainforest, particularly tropical rainforest, was significantly different from the open vegetation. In multivariate analyses, tropical and temperate rainforest diverged functionally, and both segregated from open vegetation. Furthermore, the giant eucalypt forests overlapped in function with their respective rainforests. The two types of giant eucalypt forests also exhibited greater overall functional similarity to each other than to any of the open vegetation types. We conclude that tropical and temperate giant eucalypt forests are ecologically and functionally convergent. The lack of clear functional differentiation from rainforest suggests that giant eucalypt forests are unstable states within the basin of attraction of rainforest. Our results have important implications for giant eucalypt forest management.\",\"doi\":\"10.1371\\/journal.pone.0084378\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Greg J. Jordan; David Y. P. Tng; David M. J. S. Bowman; David M J S Bowman; David Y P Tng; Greg J Jordan; Tng, David Y. P.; Jordan, Greg J.; Bowman, David M. J. S.; David M. J. S. Bowman; David Y. P. Tng; Greg J. Jordan; David Y P, Tng; David M J S, Bowman; Greg J, Jordan\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.197639118307433\",\"y\":\"-0.0758870989288165\",\"labels\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"subject\":\"cycle du carbone\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"Copernicus GmbH\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Biogeosciences\",\"link\":\"https:\\/\\/hdl.handle.net\\/10067\\/1447620151162165141\",\"fulltext\":\"https:\\/\\/hal.univ-lorraine.fr\\/hal-01557759\\/document\",\"paper_abstract\":\"\u003Cjats:p\u003EAbstract. The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121.\u003C\\/jats:p\u003E\",\"doi\":\"10.5194\\/bg-13-2537-2016\",\"project_id\":\"LP0219425\",\"accessright\":\"Open Access\",\"authors\":\"Hans Beeckman; Vivien Rossi; Fabr\\u00edcio Alvim Carvalho; Simone Aparecida Vieira; Helmut Dalitz; Franziska Volland; Davi Rodrigo Rossatto; J\\u00e9r\\u00f4me Chave; Rapha\\u00ebl P\\u00e9lissier; Marcio Fedele; Hector Maza Maza Chamba; Kaiyu Guan; Kaiyu Guan; Marisol Toledo; Steven F. Oberbauer; Jos\\u00e9 Julio de Toledo; Cl\\u00e9ment Stahl; Cl\\u00e9ment Stahl; Renato Francisco Rodrigues Marques; Michael D. Swaine; J. Julio Camarero; Karina Melga\\u00e7o; Michael S. Ross; Lucy Rowland; Ervan Rutishauser; Fl\\u00e1via R. C. Costa; Fabien Wagner; Franklin Galv\\u00e3o; Oliver D\\u00fcnisch; Foster Brown; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Magda Lea Bolzan Zanon; Jean-Louis Devineau; Lynda D. Prior; Pl\\u00ednio Barbosa de Camargo; Joseph J. O'Brien; Lawrence Mbwambo; Carolina V. Castilho; Juan Ignacio Valdez Hern\\u00e1ndez; Marcos Miranda Toledo; Mario Tomazello Filho; Hooz Angela Mendivelso; Achim Br\\u00e4uning; Deborah A. Clark; Jos\\u00e9 Luis L\\u00f3pez Ayala; Augusto C. Franco; Diogo Selhorst; Ja\\u00e7anan Eloisa de Freitas Milani; Takeshi Toma; Benjamin Brede; Liana O. Anderson; Paulo Henrique da Silva Mauricio; Afonso Figueiredo Filho; Marcos Silveira; Jennifer Koenig; Gr\\u00e9goire Vincent; Danilo Boanerges Souza; Claudio Sergio Lisi; Claudio Sergio Lisi; James Grogan; Edilson Consuelo de Oliveira; Wendeson Castro; Jan Verbesselt; Williamar Rodrigues Silva; Brett P. Murphy; Eduardo Eijji Maeda; Luciano de Souza Arruda; Fernanda C. G. Cardoso; M\\u00e1rcia C. M. Marques; Martin Worbes; Sintia Valerio Kohler; Bruno H\\u00e9rault; E. N. Chidumayo; Elisha Elifuraha; Maria Raquel Kanieski; Fidel A. Roig; Robert Gliniars; Giselda Durigan; David M. Drew; Ligia Ferreira Fedele; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Lip Khoon Kho; J\\u00fcrgen Homeier; Mark Schulze; Vivian R. B. Maria; Julia Krepkowski; Timothy R. Baker; Vinicius Resende de Castro; Damien Bonal; Milton Eugene Lieberman; Paulo Cesar Botosso; David M. J. S. Bowman; Camille Couralet; Hellen Paredio Santana; Diana Lieberman; Rubens Koloski Chagas; Jos\\u00e9 P. Lemos-Filho; Jo\\u00e3o Lima Freitas J\\u00fanior; Anthony D. Griffiths; Naoki Okada; Aster Gebrekirstos; Luiz E. O. C. Arag\\u00e3o; Luiz E. O. C. Arag\\u00e3o; Gabriel Sebastian Becker; Yadvinder Malhi; Susanne Spannl; Tomaz Longhi Santos; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. 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B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Mark Schulze; Timothy R. Baker; Jesus Julio Camarero; Oliver D\\u00fcnisch; Simone Aparecida Vieira; Marcos Miranda Toledo; Kaiyu Guan; Jos\\u00e9 Luis L\\u00f3pez Ayala; Michael D. Swaine; Anthony D. Griffiths; Jos\\u00e9 Pires Lemos-Filho; Deborah A. Clark; Vinicius Resende de Castro; Jos\\u00e9 Julio Toledo; Hooz Angela Mendivelso; Lynda D. Prior; Michael Ross; Diana Lieberman; Claudio Sergio Lisi; Carolina Volkmer de Castilho; Emmanuel N. Chidumayo; Rubens Koloski Chagas; Naoki Okada; Paulo Henrique da Silva Mauricio; Takeshi Toma; Karina Liana Lisboa Melga\\u00e7o; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Maria Raquel Kanieski; Damien Bonal; Camille Couralet; Fidel Alejandro Roig; Renato Marques; Magda Lea Bolzan Zanon; Fabien H. Wagner; Aster Gebrekirstos; Yadvinder Malhi; Lucy Rowland; Gr\\u00e9goire Vincent; Danilo Boanerges Souza; Julia Krepkowski; Hector Maza Chamba; Vivian R. B. Maria; Juan Ignacio Valdez Hern\\u00e1ndez; Milton Eugene Lieberman; Foster Irving Brown; Augusto C\\u00e9sar Franco; Steven F. Oberbauer; J\\u00e9rome Chave; Hellen Santana; Marisol Toledo; Robert Gliniars; Davi Rodrigo Rossatto; Afonso Figueiredo Filho; Tomaz Longhi Santos; Marcia C. M. Marques; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Helmut Dalitz; Giselda Durigan; Achim Br\\u00e4uning; Eduardo Eijji Maeda; Hans Beeckman; Williamar Rodrigues Silva; Pl\\u00ednio Barbosa Camargo; Jo\\u00e3o Lima Freitas J\\u00fanior; Rapha\\u00ebl P\\u00e9lissier; Wendeson Castro; Cl\\u00e9ment Stahl; Jennifer Koenig; Joseph J. O'Brien; Benjamin Brede; David M. J. S. Bowman; Luiz E. O. C. Arag\\u00e3o; Jean-Louis Devineau; Marcio Fedele; Fabr\\u00edcio Alvim Carvalho; Paulo Cesar Botosso; Mario Tomazello Filho; Fernanda C. G. Cardoso; Diogo Selhorst; Flavia Regina Capellotto Costa; Ervan Rutishauser; Sintia Valerio Kohler; Lawrence Mbwambo; J\\u00fcrgen Homeier; Liana O. Anderson; Ja\\u00e7anan Eloisa de Freitas Milani; Marcos Silveira; Brett P. Murphy; Edilson Consuelo de Oliveira; Franziska Volland; Franklin Galv\\u00e3o; Luciano de Souza Arruda; Martin Worbes; David M. Drew; Jan Verbesselt; Susanne Spannl; Ligia Ferreira Fedele; Lip Khoon Kho; Elisha Elifuraha; Gabriel Sebastian Becker; Vivien Rossi; Bruno H\\u00e9rault; James Grogan; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. 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V.; Guan, K.; Mauricio, P. H. D.; Galvao, F.; Elifuraha, E.; Zanon, M. L. B.; Gliniars, R.; Herault, B.; Maeda, E. E.; Worbes, M.; Stahl, C.; Drew, D. M.; Santos, T. L.; Rossatto, D. R.; Rowland, L.; de Oliveira, E. C.; Toledo, J. J.; Arruda, L. D. S.; Figueiredo, A.; Ross, M.; Chave, J.; Clark, D. A.; Dalitz, H.; Volland, F.; Krepkowski, J.; Marques, M. C. M.; Milani, J. E. D.; Souza, D. B.; Franco, A. C.; Devineau, J. L.; Mendivelso, H. A.; Castro, W.; Toledo, M.; Grogan, J.; Kanieski, M. R.; Baker, T. R.; Brede, B.; Rutishauser, E.; Finger, C. A. G.; Prior, L. D.; Costa, F. R. C.; Silva, W. R.; Bowman, D. M. J. S.; Ayala, J. L. L.; Selhorst, D.; Becker, G. S.; Marques, R.; Aragao, L. E. O. C.; Hernandez, J. I. V.; Couralet, C.; Santana, H.; Malhi, Y.; Fedele, M.; Homeier, J.; Beeckman, H.; Oberbauer, S. F.; Gebrekirstos, A.; Kohler, S. V.; Vincent, Gr\\u00e9goire; de Castro, V. R.; Kho, L. K.; Murphy, B. P.; Koenig, J.; Melgaco, K. L. L.; Lieberman, D.; Freitas, J. L.; Brauning, A.; Tomazello, M.; Lieberman, M. E.; Maria, V. R. B.; Rossi, V.; Toledo, M. M.; Durigan, G.; Okada, N.; Griffiths, A. D.; Camarero, J. J.; Mbwambo, L.; Verbesselt, J.; Brown, F. I.; Schulze, M.; Cardoso, F. C. G.; Dunisch, O.; Fedele, L. F.; Vieira, S. A.; Silveira, M.; Graca, P. M. L. D.; Roig, F. A.; P\\u00e9lissier, Rapha\\u00ebl; Lisi, C. S.; Carvalho, F. A.; Spannl, S.; Chamba, H. M.; Botosso, P. C.; Chagas, R. K.; Lemos, J. P.; O'Brien, J. J.; Anderson, L. O.; Toma, T.; Swaine, M. D.; Wagner, F. H.; Bonal, D.; Camargo, P. B.; Chidumayo, E. N.; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Bowman, David M. 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M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; Castro, Vinicius Resende; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Longhi Santos, Tomaz; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Guan, K.; Elifuraha, E.; Zanon, M. L. B.; Gliniars, R.; Lemos-Filho, J. P.; Maeda, E. E.; Worbes, M.; Stahl, C.; Drew, D. M.; L\\u00f3pez Ayala, J. L.; Vincent, G.; Rossatto, D. R.; Rowland, L.; de Oliveira, E. C.; Freitas J\\u00fanior, J. L.; Toledo, J. J.; Longhi Santos, T.; Ross, M.; Chave, J.; Ferreira Fedele, L.; Clark, D. A.; Dalitz, H.; Volland, F.; Krepkowski, J.; Marques, M. C. M.; Franco, A. C.; Mendivelso, H. A.; Castro, W.; Toledo, M.; Grogan, J.; Kanieski, M. R.; Baker, T. R.; Arag\\u00e3o, L. E. O. C.; Brede, B.; Rutishauser, E.; Galv\\u00e3o, F.; de Freitas Milani, J. E.; Finger, C. A. G.; Prior, L. D.; Costa, F. R. C.; Silva, W. R.; Bowman, D. M. J. S.; Figueiredo Filho, A.; Selhorst, D.; Becker, G. S.; Marques, R.; Couralet, C.; Santana, H.; Malhi, Y.; Fedele, M.; Homeier, J.; Beeckman, H.; Oberbauer, S. F.; H\\u00e9rault, B.; Gebrekirstos, A.; Kohler, S. V.; Volkmer de Castilho, C.; Devineau, J.-L.; de Castro, V. R.; Kho, L. K.; Br\\u00e4uning, A.; Murphy, B. P.; Koenig, J.; Lieberman, D.; Gra\\u00e7a, P. M. L. D. A.; Lieberman, M. E.; Maria, V. R. B.; da Silva Mauricio, P. H.; Boanerges Souza, D.; Rossi, V.; Toledo, M. M.; Tomazello Filho, M.; D\\u00fcnisch, O.; Durigan, G.; Okada, N.; Griffiths, A. D.; Camarero, J. J.; Mbwambo, L.; Verbesselt, J.; Brown, F. I.; Schulze, M.; Cardoso, F. C. G.; P\\u00e9lissier, R.; Melga\\u00e7o, K. L. L.; de Souza Arruda, L.; Vieira, S. A.; Silveira, M.; Maza Chamba, H.; Roig, F. A.; Lisi, C. S.; Carvalho, F. A.; Spannl, S.; Botosso, P. C.; Chagas, R. K.; O'Brien, J. J.; Anderson, L. O.; Toma, T.; Valdez Hern\\u00e1ndez, J. I.; Swaine, M. D.; Wagner, F. H.; Bonal, D.; Camargo, P. B.; Chidumayo, E. 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B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; de Castilho, Carolina Volkmer; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Lima de Alencastro Graca, Paulo Maurcio; Botosso, Paulo Cesar; Capellotto Costa, Flavia Regina; Fedele, Ligia Ferreira; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Freitas Junior, Joao Lima; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Swaine, Michael D.; Becker, Gabriel Sebastian; Souza, Danilo Boanerges; Verbesselt, Jan; Guimaraes Finger, Cesar Augusto; Krepkowski, Julia; Prior, Lynda D.; Lemos-Filho, Jose Pires; de Freitas Milani, Jaanan Eloisa; Guan, Kaiyu; Clark, Deborah A.; Marques, Renato; de Arruda, Luciano Souza; Durigan, Giselda; Santos, Tomaz Longhi; Rossatto, Davi Rodrigo; Herault, Bruno; Camargo, Plnio Barbosa; Bolzan Zanon, Magda Lea; Vincent, Gregoire; Lisboa Melgaco, Karina Liana; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Chave, Jerome; Toledo, Marcos Miranda; Bowman, David M. J. S.; Anderson, Liana O.; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Kohler, Sintia Valerio; Elifuraha, Elisha; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Duenisch, Oliver; Braeuning, Achim; Santana, Hellen; Maza Chamba, Hector; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; da Silva Mauricio, Paulo Henrique; Gliniars, Robert; Valdez Hernandez, Juan Ignacio; Lieberman, Diana; Galvao, Franklin; Aragao, Luiz E. O. C.; Oberbauer, Steven F.; Dalitz, Helmut; Spannl, Susanne; Tomazello Filho, Mario; Toledo, Marisol; Carvalho, Fabricio Alvim; Homeier, Jurgen; Maeda, Eduardo Eijji; Franco, Augusto Cesar; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Lopez Ayala, Jose Luis; Ross, Michael; Rutishauser, Ervan; Alejandro Roig, Fidel; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; Toledo, Jose Julio; Kho, Lip Khoon; Koenig, Jennifer; Pelissier, Raphael; Fedele, Marcio; Julio Camarero, Jesus; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Angela Mendivelso, Hooz; Brown, Foster Irving; E. N. Chidumayo; J. J. Camarero; H. A. Mendivelso; S. V. Kohler; D. Lieberman; M. Toledo; A. D. Griffiths; M. D. Swaine; K. L. L. Melga\\u00e7o; S. A. Vieira; M. Ross; M. Schulze; G. S. Becker; L. K. Kho; E. C. de Oliveira; J. Verbesselt; Y. Malhi; M. Tomazello Filho; L. Ferreira Fedele; L. Mbwambo; F. A. Roig; J. Koenig; G. Vincent; F. H. Wagner; W. R. Silva; M. C. M. Marques; M. E. Lieberman; M. L. B. Zanon; A. Figueiredo Filho; J. L. L\\u00f3pez Ayala; L. de Souza Arruda; F. I. Brown; C. S. Lisi; D. Boanerges Souza; C. Couralet; H. Santana; J. Krepkowski; W. Castro; F. Volland; L. E. O. C. Arag\\u00e3o; T. Longhi Santos; C. Volkmer de Castilho; F. A. Carvalho; J. Chave; J. I. Valdez Hern\\u00e1ndez; D. A. Clark; M. Fedele; A. Br\\u00e4uning; M. Worbes; V. Rossi; V. R. B. Maria; J. Homeier; S. F. Oberbauer; J.-L. Devineau; H. Dalitz; K. Guan; J. E. de Freitas Milani; C. A. G. Finger; J. J. Toledo; P. M. L. D. A. Gra\\u00e7a; S. Spannl; L. O. Anderson; D. R. Rossatto; B. Brede; T. R. Baker; J. Grogan; M. Silveira; R. K. Chagas; G. Durigan; O. D\\u00fcnisch; D. M. J. S. Bowman; N. Okada; E. Elifuraha; L. D. Prior; V. R. de Castro; R. P\\u00e9lissier; L. Rowland; F. R. C. Costa; E. E. Maeda; F. Galv\\u00e3o; J. L. Freitas J\\u00fanior; J. J. O'Brien; B. H\\u00e9rault; H. Beeckman; R. Gliniars; J. P. Lemos-Filho; E. Rutishauser; D. Selhorst; A. Gebrekirstos; F. C. G. Cardoso; B. P. Murphy; C. Stahl; M. M. Toledo; H. Maza Chamba; P. H. da Silva Mauricio; P. C. Botosso; T. Toma; P. B. Camargo; R. Marques; D. M. Drew; D. Bonal; A. C. Franco; M. R. Kanieski; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. 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B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Stahl, Clement; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Pelissier, Rapha\\u00ebl; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Herault, Bruno; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Bowman, David M. J. S.; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; da Silva Mauricio, Paulo Henrique; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Spannl, Susanne; Tomazello Filho, Mario; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Longhi Santos, Tomaz; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo\",\"subject_orig\":\"cycle du carbone\",\"oa_state\":1,\"url\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.367382118335057\",\"y\":\"0.397753425114482\",\"labels\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"subject\":\"0106 biological sciences\",\"title\":\"Conservative water management in the widespread conifer genus Callitris\",\"year\":\"2013-11-13\",\"publisher\":\"Oxford University Press (OUP)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"AoB PLANTS\",\"link\":\"https:\\/\\/doi.org\\/10.1093\\/aobpla\\/plt052\",\"fulltext\":\"\",\"paper_abstract\":\"Water management by woody species encompasses characters involved in seeking, transporting and evaporating water. Examples of adaptation of individual characters to water availability are common, but little is known about the adaptability of whole-plant water management. Here we use plant hydration and growth to examine variation in whole-plant water management characteristics within the conifer genus Callitris. Using four species that cover the environmental extremes in the Australian continent, we compare seasonal patterns of growth and hydration over 2 years to determine the extent to which species exhibit adaptive variation to the local environment. Detailed measurements of gas exchange in one species are used to produce a hydraulic model to predict changes in leaf water potential throughout the year. This same model, when applied to the remaining three species, provided a close representation of the measured patterns of water potential gradient at all sites, suggesting strong conservation in water management, a conclusion supported by carbon and oxygen isotope measurements in Callitris from across the continent. We conclude that despite its large range in terms of rainfall, Callitris has a conservative water management strategy, characterized by a high sensitivity of growth to rainfall and a delayed (anisohydric) closure of stomata during soil drying.\",\"doi\":\"10.1093\\/aobpla\\/plt052\",\"project_id\":\"FT100100237\",\"accessright\":\"Open Access\",\"authors\":\"Scott Nichols; David M. J. S. Bowman; Lynda D. Prior; Timothy J. Brodribb; Brett P. Murphy; Brett P. Murphy; Pauline F. Grierson; S. Nichols; T. J. Brodribb; P. F. Grierson; D. M. J. S. Bowman; B. P. Murphy; L. D. Prior; Brodribb, Timothy J.; Nichols, Scott; Bowman, David M. J. S.; Murphy, Brett P.; Grierson, Pauline F.; Prior, Lynda D.\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.268025677052877\",\"y\":\"0.18910176812401\",\"labels\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"subject\":\"13. Climate action\",\"title\":\"Are giant eucalypt forests rain forest?\",\"year\":\"2023-01-01\",\"publisher\":\"University Of Tasmania\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/doi.org\\/10.25959\\/23243075\",\"fulltext\":\"\",\"paper_abstract\":\"Forests dominated by giant eucalypts ( eucalypt species with the potential to attain heights exceeding 70m) occur along the Australian east coast in association with rain forest. These forests contribute significantly to the global carbon budget but their ecological classification suffers from ambiguities around the definition of rain forest. The belief that eucalypts are 'sclerophyllous' and therefore not rain forest is a subjective view that has led to problems with conservation policies and management strategies of giant eucalypt forests. Understanding these forests from a global and functional viewpoint is paramount for their effective management. Eucalyptus grandis-dominated giant eucalypt forests in the Wet Tropics of Australia serve as a case study. Observing that rain forest species continuously regenerate in the understories of these eucalypt forests and believing that rain forest incursion will lead to the local elimination of the giant eucalypts, land managers prescribe frequent, low intensity fires. This management strategy is contentious and not underpinned by robust ecological understanding. To resolve these classificatory problems around eucalypts occurring in rain forest, I take a multidisciplinary approach to address the specific question: Are giant eucalypt forests rain forests? To obtain an in depth understanding of the ecology of giant eucalypts and the forests they dominate, and to provide a global context for these systems, I synthesise over a century's worth of literature on these systems (Chapter 2). Based on these data I propose that giant eucalypts are ecologically akin to rain forest emergent pioneers with a unique dependence on fire for regeneration, and that their habitat should be considered a type of secondary rain forest. Using a GIS-based approach I investigate the landscape scale vegetation dynamics of rain forest and E. grandis forest in the Wet Tropics, where E. grandis forests are considered to be threatened (Chapter 3). Using a environmentally stratified sample of sites, I show that rain forest has expanded over the past 50 years, and that this expansion is most likely a response to a global driver such as increased atmospheric CO2 rather than with local environmental factors. Projective modelling of this rain forest expansion predicts that, even at the fastest estimated rate known for the region, it will be more than 2000 years before rain forest fully engulfs giant eucalypt forests. In Chapter 4, I present a seedling growth experiment to examine if the regeneration niche of E. grandis exhibits ecological convergence with that of well-studied temperate giant eucalypts. I show that E. grandis seedlings grow poorly in unburnt rain forest soils because of the unavailability of phosphorus. The addition of phosphorus lifts phosphorus-deficiency symptoms in seedlings in rain forest soils, and accords well with the idea of E. grandis being a rain forest pioneer with the unique requirement of fire as a disturbance mechanism to create suitable open habitats for regeneration. To contextualize the rain forest- giant eucalypt forest - savanna transitions in Australia from a functional and macroecological perspective, I present a plant functional trait analysis of representative plants across these vegetation transitions in both tropical and temperate Australia (Chapter 5). I show that both tropical and temperate giant eucalypt forest are functionally convergent with rain forest and not with savanna. These results suggest that a classification of giant eucalypt forest based on functional attributes of the whole forest will be more useful for management policy than the established classification based on canopy dominants. In conclusion (Chapter 6), the synthesis ofmy landscape ecology and functional biology data supports my overarching hypothesis that giant eucalypt forests are functionally and ecologically rain forests and should be managed as such. I discuss the implications of my research for the management of Wet Tropics giant eucalypt forest and recommend that E. grandis forest should be managed under a regime of total fire suppression. Given that rare natural fires can be expected to occur under this management, the resulting regime will mimic the inherently long fire return times of these systems.\",\"doi\":\"10.25959\\/23247668.v1\",\"project_id\":\"DP0878177\",\"accessright\":\"not available\",\"authors\":\"Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP\",\"subject_orig\":\"13. Climate action\",\"oa_state\":0,\"url\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.246040628440847\",\"y\":\"-0.167350749419719\",\"labels\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"subject\":\"0106 biological sciences\",\"title\":\"Humid tropical rain forest has expanded into eucalypt forest and savanna over the last 50 years\",\"year\":\"2011-11-24\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Ecology and Evolution\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1002\\/ece3.70\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/11343\\/264893\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003ETropical rain forest expansion and savanna woody vegetation thickening appear to be a global trend, but there remains uncertainty about whether there is a common set of global drivers. Using geographic information techniques, we analyzed aerial photography of five areas in the humid tropics of northeastern Queensland, Australia, taken in the 1950s and 2008, to determine if changes in rain forest extent match those reported for the Australian monsoon tropics using similar techniques. Mapping of the 1950s aerial photography showed that of the combined study area (64,430 ha), 63% was classified as eucalypt forests\\/woodland and 37% as rain forest. Our mapping revealed that although most boundaries remained stable, there was a net increase of 732 ha of the original rain forest area over the study period, and negligible conversion of rain forest to eucalypt forest\\/woodland. Statistical modeling, controlling for spatial autocorrelation, indicated distance from preexisting rain forest as the strongest determinant of rain forest expansion. Margin extension had a mean rate across the five sites of 0.6 m per decade. Expansion was greater in tall open forest types but also occurred in shorter, more flammable woodland vegetation types. No correlations were detected with other local variables (aspect, elevation, geology, topography, drainage). Using a geographically weighted mean rate of rain forest margin extension across the whole region, we predict that over 25% of tall open forest (a forest type of high conservation significance) would still remain after 2000 years of rain forest expansion. This slow replacement is due to the convoluted nature of the rain forest boundary and the irregular shape of the tall open forest patches. Our analyses point to the increased concentration of atmospheric CO\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003Eas the most likely global driver of indiscriminate rain forest expansion occurring in northeastern Australia, by increasing tree growth and thereby overriding the effects of fire disturbance.\u003C\\/jats:p\u003E\",\"doi\":\"10.1002\\/ece3.70\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"David Y. P. Tng; Gregor J. Sanders; Ellen Weber; Grant J. Williamson; Brett P. Murphy; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Gregor Sanders; Grant J. Williamson; Ellen Weber; David Y. P. Tng; David Y P, Tng; David M J S, Bowman; Brett P, Murphy; Ellen, Weber; Grant J, Williamson; Gregor, Sanders; Jeanette, Kemp; Murphy, Brett P; Williamson, Grant J; Tng, David Y P; Sanders, Gregor; Kemp, Jeanette; Bowman, David M J S; Weber, Ellen\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.226080980470218\",\"y\":\"-0.155664175951863\",\"labels\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"subject\":\"0301 basic medicine\",\"title\":\"Ancestral stomatal control results in a canalization of fern and lycophyte adaptation to drought\",\"year\":\"2013-02-20\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"New Phytologist\",\"link\":\"https:\\/\\/pubmed.ncbi.nlm.nih.gov\\/23421706\\/\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003ESummary\u003C\\/jats:title\u003E\u003Cjats:p\u003E \u003Cjats:list list-type=\\\"bullet\\\"\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003ELittle is known about how a predominantly passive hydraulic stomatal control in ferns and lycophytes might impact water use under stress. Ferns and lycophytes occupy a diverse array of habitats, from deserts to rainforest canopies, raising the question of whether stomatal behaviour is the same under all ecological strategies and imposes ecological or functional constraints on ferns and lycophytes.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EWe examined the stomatal response of a diverse sample of fern and lycophyte species to both soil and atmospheric water stress, assessing the foliar level of the hormone abscisic acid (\u003Cjats:styled-content style=\\\"fixed-case\\\"\u003EABA\u003C\\/jats:styled-content\u003E) over drought and recovery and the critical leaf water potential (\\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E) at which photosynthesis in droughted leaves failed to recover.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EThe stomata of all ferns and lycophytes showed very predictable responses to soil and atmospheric water deficit via \\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E, while stomatal closure was poorly correlated with changes in ABA. We found that all ferns closed stomata at very low levels of water stress and their survival afterwards was limited only by their capacitance and desiccation tolerance.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EFerns and lycophytes have constrained stomatal responses to soil and atmospheric water deficit as a consequence of a predominantly passive stomatal regulation. This results in a monotypic strategy in ferns and lycophytes under water stress.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003C\\/jats:list\u003E \u003C\\/jats:p\u003E\",\"doi\":\"10.1111\\/nph.12190\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.523766748428778\",\"y\":\"0.152693334034553\",\"labels\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"subject\":\"0106 biological sciences\",\"title\":\"Aborigine\\u2010managed forest, savanna and grassland: biome switching in montane eastern Australia\",\"year\":\"2014-04-10\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1111\\/jbi.12306\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/1885\\/74078\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003ETo assess hypotheses about the role of anthropogenic fire in the maintenance and origin of a fine\\u2010scale vegetation mosaic of rain forest, eucalypt savanna and grassland.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EBunya Mountains, subtropical eastern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EA time series of vegetation maps was compiled from historical and recent aerial photography and field surveys. Geospatial models were constructed of environmental domains for rain forest, savanna and grassland, and for areas of biome change. Grassland soils were analysed for carbon isotope ratios (\\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC), and radiocarbon (\u003Cjats:sup\u003E14\u003C\\/jats:sup\u003EC) dates were acquired for bulk samples from a range of depths.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EAnalysis revealed weak associations between topography and the distribution of rain forest, savanna and grassland, and their patterns of recent change. Grassland occupied an environmental domain intermediate between rain forest and savanna and was more than four times as likely to occur within a matrix of rain forest rather than savanna. There was a large proportional reduction in the area of both grassland (\\u221235%) and savanna (\\u221219%) between 1961 and 2006 because of the expansion of rain forest. However, the greater initial extent of savanna meant that the areal loss of savanna was an order of magnitude greater than for grassland (1433 vs. 146\\u00a0ha). There was no evidence of abrupt changes in \\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC in grassland soil profiles, indicating stability of the vegetation over the last 2000\\u00a0years.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThere is no simple gradient in \\u2018tree suitability\\u2019 from rain forest, through savanna, to treeless grassland on the Bunya Mountains. A general absence of fire since the 19th century has greatly reduced the extent of grassy savanna and grassland formations, to the advantage of rain forest. These results support the hypothesis that the vegetation mosaic on the Bunya Mountains is a cultural artefact and testament to millennia of skilful and persistent burning. We could not conclusively reject the hypothesis that the grasslands are Pleistocene relicts that have declined throughout the Holocene; nonetheless, an explanation more consistent with the evidence overall is that the grasslands must have had periods of expansion during the Holocene, probably as a consequence of severe fires that have destroyed patches of rain forest.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12306\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Butler, Don W.; Fensham, Rod; Murphy, Brett P.; Bury, Sarah J.; Bowman, David M. J. S.; Haberle, Simon; Brett P. Murphy; Sarah J. Bury; David M. J. S. Bowman; Simon G. Haberle; Don W. Butler; Roderick J. Fensham\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.214181365281173\",\"y\":\"-0.281557825509733\",\"labels\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"subject\":\"0106 biological sciences\",\"title\":\"Alternative stable states and the role of fire\\u2013vegetation\\u2013soil feedbacks in the temperate wilderness of southwest Tasmania\",\"year\":\"2011-11-06\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-011-9677-0\",\"fulltext\":\"\",\"paper_abstract\":\"Two ecological models have been put forward to explain the dynamics of fire-promoting and fire-sensitive vegetation in southwest Tasmania: the alternative stable states model of Jackson (in Proc Ecol Soc Aust 3:9\\u201316, 1968) and the sharpening switch model of Mount (in Search 10:180\\u2013186, 1979). Assessing the efficacy of these models requires high resolution spatio-temporal data on whether vegetation patterns are stable or dynamic across landscapes. We analysed ortho-rectified sequences of aerial photography and satellite imagery from 1948, 1988 and 2010 to detect decadal scale changes in forest and non-forest vegetation cover in southwest Tasmania. There was negligible change from forest to non-forest (\u003C0.05%) and only a modest change from non-forest to forest over the study period. Forest cover increased by 4.1% between 1948 and 1988, apparently due to the recovery of forest vegetation following stand-replacing fire prior to 1948. Forest cover increased by 0.8% between 1988 and 2010, reflecting the limited ability of forest to invade treeless areas. The two models include interactions between vegetation, fire and soil, which we investigated by analysing the chemical (phosphorus, nitrogen) and physical properties (clay, silt) of 128 soil samples collected across 34 forest\\u2013non-forest boundaries. Phosphorus in the upper horizon was typically lower in non-forest vegetation compared to forest vegetation, which is consistent with proposed fire\\u2013vegetation\\u2013soil feedbacks. Mineral horizons were dominated by sand, with low levels of clay under all vegetation types. Available field evidence lends support to the Jackson (1968) alternative stable states model as the most suitable model of vegetation dynamics on nutrient poor substrates in southwest Tasmania although modifications of the timeframes for transitions toward rainforest are required.\",\"doi\":\"10.1007\\/s10980-011-9677-0\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Samuel W. Wood; David M. J. S. Bowman; Sam W. Wood\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.363903148059666\",\"y\":\"-0.104475505046146\",\"labels\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"subject\":\"0106 biological sciences\",\"title\":\"Has global environmental change caused monsoon rainforests to expand in the Australian monsoon tropics?\",\"year\":\"2010-06-24\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-010-9496-8\",\"fulltext\":\"\",\"paper_abstract\":\"A large research program in the Australian monsoon tropics has concluded that monsoon rainforests have expanded within the savanna matrix, a trend that has been emulated throughout the tropics worldwide. The driver of the northern Australian trend was not resolved, but it was suggested to be linked to a long-term trend towards wetter climates, atmospheric CO2 enrichment, and changed fire regimes. We review these findings with particular consideration of its analytical and evidentiary basis and plausibility of the global change hypothesis. Field validation has largely demonstrated that the aerial photographic technique that underpinned the previous research is reliable enough to detect rainforest expansion. Statistical modelling demonstrated that the expansion is related to sites with regionally low fire activity, although models are of low explanatory power reflecting the sketchy historical records of fire and feral animal impacts. Field studies show that current fire regimes adjacent to expanding rainforest patches are causing populations of the native conifer Callitris intratropica, an obligate seeder, to crash. Therefore, it is unlikely that changes in fire regimes, which have been deleterious to other fire-sensitive taxa and plant communities in the region, are responsible for the rainforest expansion. We conclude that the expansion of monsoon rainforests is most plausibly linked to the current wetting trend or elevated CO2 concentration. Increases in either water availability or CO2 concentration can potentially overwhelm the negative feedback between fire and rainforest cover that is responsible for the meta-stability of monsoon rainforest boundaries. However, further research at the continental scale, using aerial photography, tree rings and other proxies, is required to evaluate this hypothesis.\",\"doi\":\"10.1007\\/s10980-010-9496-8\",\"project_id\":\"LP0346929\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Daniel S. Banfai; Brett P. Murphy; Brett P. Murphy; Daniel S. Banfai; David M. J. S. Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.188262242757116\",\"y\":\"-0.114417703128843\",\"labels\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"subject\":\"0301 basic medicine\",\"title\":\"Australia\\u2014A Model System for the Development of Pyrogeography\",\"year\":\"2011-04-01\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Fire Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.4996\\/fireecology.0701005\",\"fulltext\":\"\",\"paper_abstract\":\"We define pyrogeography as an integrative, multidisciplinary perspective of landscape fire, its ecological effects, and its relationships with human societies. Like biogeography, this program spans geographic scales from the local to the global, has an evolutionary frame, and thus a geological dimension. And, like other geographic disciplines, pyrogeography has a clear commitment to understanding the interrelationships between cultures and their environment. We illustrate our approach by considering the pyrogeography of Australia. We demonstrate how a long history of fire has had a pervasive influence on the continent\\u2019s biota. While Aborigines coexisted with flammable landscapes for millennia, contemporary Australian society is still learning to live in a land of fire.\",\"doi\":\"10.4996\\/fireecology.0701005\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Brett P. Murphy; David M. J. S. Bowman; Brett P. Murphy; David M. J. S. Bowman\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0561772020500714\",\"y\":\"0.441696304061327\",\"labels\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"subject\":\"0106 biological sciences\",\"title\":\"Fire regimes and woody biomass dynamics in Australian savannas\",\"year\":\"2013-08-30\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/10.1111\\/jbi.12204\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003EMany tropical savannas are undergoing a trend of increasing woody biomass, or \\u2018woody thickening\\u2019. Management to reduce fire frequency and intensity in savannas could substantially increase the amount of carbon stored in woody biomass. We addressed two questions: (1) are northern Australian savannas thickening; and (2) to what extent, and by what demographic processes, does fire affect woody biomass accumulation?\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EThree large national parks, covering 24,000\\u00a0km\u003Cjats:sup\u003E2\u003C\\/jats:sup\u003E, in monsoonal northern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EWe examined changes in woody biomass carbon stocks \\u2013 inferred from tree basal area and the density of woody understorey plants \\u2013 over a 10\\u2010year period in 136 savanna monitoring plots. We statistically assessed these changes in relation to fire frequency and severity. We used a meta\\u2010analysis to identify general trends in woody cover in Australian savannas over the last half\\u2010century.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EWoody biomass carbon stocks were relatively stable across the three national parks, but rates of change were statistically indistinguishable from earlier findings of a weak thickening trend. Change was negatively correlated with fire frequency, particularly the frequency of severe fires. High frequencies of severe fires decreased rates of accumulation of biomass by existing trees (through reductions in tree growth and death of individual stems), rather than whole\\u2010tree mortality and suppression of recruitment. However, across northern Australia, our meta\\u2010analysis identified a general, albeit weak, trend of woody thickening.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThe drivers of northern Australia's weak thickening trend are uncertain, but likely candidates include increasing atmospheric \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E concentration and water availability, and pastoral intensification. We demonstrate that changes to fire management have the potential to either increase or decrease rates of woody thickening relative to any underlying trend. Understanding how savanna fires affect woody biomass, and how fire effects are mediated by climate and \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E, are essential research priorities to predict the fate of savannas.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12204\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Caroline E. R. Lehmann; Caroline E. R. Lehmann; Brett P. Murphy; Brett P. Murphy; Caroline E. R. Lehmann; Jeremy Russell\\u2010Smith; Michael J. Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.250484439327965\",\"y\":\"-0.37778601916065\",\"labels\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"area_uri\":3,\"area\":\"0106 biological sciences\"},{\"id\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"subject\":\"0106 biological sciences\",\"title\":\"Population collapse of a Gondwanan conifer follows the loss of Indigenous fire regimes in a northern Australian savanna\",\"year\":\"2022-05-31\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Scientific Reports\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1038\\/s41598-022-12946-3\",\"fulltext\":\"http:\\/\\/purl.org\\/au-research\\/grants\\/arc\\/DP150101777\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003EColonialism has disrupted Indigenous socioecological systems around the globe, including those supported by intentional landscape burning. Because most disruptions happened centuries ago, our understanding of Indigenous fire management is largely inferential and open to debate. Here, we investigate the ecological consequences of the loss of traditional Aboriginal fire management on fire-exposed savannas on the Arnhem Plateau, northern Australia, using the fire-sensitive conifer \u003Cjats:italic\u003ECallitris intratropica\u003C\\/jats:italic\u003E as a bio-indicator. We contrast Kakadu National Park, where traditional Aboriginal fire management was severely disrupted during the early twentieth century following Aboriginal relocation to surrounding settlements, and an adjacent Aboriginal estate where traditional Aboriginal fire management endures. Since 2006, traditional Aboriginal fire management at this site has been overlaid by a program of broad-scale institutionalized burning in the early dry season, designed to reduce greenhouse emissions. Using remote sensing, field survey, and dendrochronology, we show that on the Aboriginal estate, \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E populations depend on the creation of a shifting patch mosaic of long unburned areas necessary for the recruitment of \u003Cjats:italic\u003EC. intratropica.\u003C\\/jats:italic\u003E However, the imposition of broad-scale fire management is disrupting this population patch dynamic. In Kakadu, there have been extreme declines of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E associated with widespread fires since the mid twentieth century and consequent proliferation of grass fuels. Fire management in Kakadu since 2007, designed to increase the size and abundance of patches of unburned vegetation, has not been able to reverse the population collapse of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E. Our study demonstrates that colonial processes including relocation of Indigenous people and institutional fire management can have deleterious consequences that are nearly irreversible because of hysteresis in \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E population dynamics.\u003C\\/jats:p\u003E\",\"doi\":\"10.1038\\/s41598-022-12946-3\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Bowman, DMJS; Williamson, GJ; Johnston, FH; Bowman, CJW; Murphy, BP; Roos, CI; Trauernicht, C; Rostron, J; Prior, LD; Bowman, DMJS; Prior, LD; Haverkamp, C; Rann, KD; Donald C. Franklin; Sean M. Bellairs; Pascale Taplin; Michael J. Lawes; Brook, B.; Prior, L.; Bowman, D.; Walsh, Angie; Bowman, David M. J. S.; Whitehead, Peter J.; Price, Owen; Rosanne D'Arrigo; Jonathan G. Palmer; Patrick J. Baker; Brittany Dahl; Declan Norrie; Kathryn Allen; Lynda D. Prior; David J. M. S. Bowman; Scott Nichols; Jonathan G. Palmer; Matthew Brookhouse; Ben J. French; David M. J. S. Bowman; David M. J. S. Bowman; Owen Price; Nichols, SC; MacDermott, HJ; Bowman, DMJS; Murphy, BP; Russell-Smith, Jeremy; Yibarbuk, D.; Cooke, P; Bowman, David M. J. S.; Jackson, DM; Whitehead, Peter J.; Fisher, Alaric; Godjuwa, C; Choquenot, D; David M. J. S. Bowman; Stuart Pearson; Kathryn Allen; Quan Hua; Brett P. Murphy; David M. J. S. Bowman; Talia E. Portner; Clay Trauernicht; Wanner, J\\u00fcrgen; Buchbauer, Gerhard; Jirovetz, Leopold; Schmidt, Erich; Bowman, David M. J. S.; Murphy, Brett P.; Roos, Christopher I.; Rostron, Joshua; Williamson, Grant J.; Johnston, Fay H.; Bowman, Clarence J. W.; Trauernicht, Clay; Prior, Lynda D.; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; David M J S, Bowman; Christopher I, Roos; Fay H, Johnston; Brett P, Murphy; Joshua, Rostron; Lynda D, Prior; Grant J, Williamson; Clay, Trauernicht; Clarence J W, Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0231958227792847\",\"y\":\"0.278514210389028\",\"labels\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"subject\":\"0301 basic medicine\",\"title\":\"Unique Responsiveness of Angiosperm Stomata to Elevated CO2 Explained by Calcium Signalling\",\"year\":\"2013-11-20\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0082057\",\"fulltext\":\"\",\"paper_abstract\":\"Angiosperm and conifer tree species respond differently when exposed to elevated CO2, with angiosperms found to dynamically reduce water loss while conifers appear insensitive. Such distinct responses are likely to affect competition between these tree groups as atmospheric CO2 concentration rises. Seeking the mechanism behind this globally important phenomenon we targeted the Ca(2+)-dependent signalling pathway, a mediator of stomatal closure in response to elevated CO2, as a possible explanation for the differentiation of stomatal behaviours. Sampling across the diversity of vascular plants including lycophytes, ferns, gymnosperms and angiosperms we show that only angiosperms possess the stomatal behaviour and prerequisite genetic coding, linked to Ca(2+)-dependent stomatal signalling. We conclude that the evolution of Ca(2+)-dependent stomatal signalling gives angiosperms adaptive benefits in terms of highly efficient water use, but that stomatal sensitivity to high CO2 may penalise angiosperm productivity relative to other plant groups in the current era of soaring atmospheric CO2.\",\"doi\":\"10.1371\\/journal.pone.0082057\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb; Brodribb, Timothy J.; McAdam, Scott A. M.; Timothy J Brodribb; Scott A M McAdam\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.543985837479226\",\"y\":\"0.0858289826142518\",\"labels\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"subject\":\"0106 biological sciences\",\"title\":\"Are the eucalypt and non-eucalypt components of Australian tropical savannas independent?\",\"year\":\"2010-11-10\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Oecologia\",\"link\":\"https:\\/\\/espace.cdu.edu.au\\/view\\/cdu:37682\",\"fulltext\":\"\",\"paper_abstract\":\"Eucalypts (Eucalyptus and Corymbia spp.) dominate (60%) the tree biomass of Australia's tropical savannas but account for only a fraction (28%) of the tree diversity. Because of their considerable biomass and adaptation to environmental stressors, such as fire, the eucalypts may drive tree dynamics in these savannas, possibly to the exclusion of non-eucalypts. We evaluated whether the eucalypt and non-eucalypt components in tropical savannas are dependent so that changes in one component are matched by opposite trends in the other. Using tree inventory data from 127 savanna sites across the rainfall and fire frequency gradients, we found that eucalypt and non-eucalypt basal area and species richness had a negative relationship. This relationship was maintained across the rainfall gradient, with rainfall having a positive effect on the basal area and species richness of both components, but with a greater effect in non-eucalypts. Fire frequency negatively affected basal area, but not species richness, although basal area and species richness of eucalypts and non-eucalypts did not differ in their response to fire. Rainfall appears to set the upper bounds to woody biomass in these mesic savannas, while fire maintains woody biomass below carrying capacity and facilitates coexistence of the components. The magnitude of the component responses, particularly for non-eucalypts, is determined by rainfall, but their dependence is likely due to their differential response to both rainfall and fire, but not to competition for resources. Thus, while eucalypts dominate biomass overall, at high rainfall sites non-eucalypt basal area and diversity are highest, especially where fire frequency is low.\",\"doi\":\"10.1007\\/s00442-010-1829-4\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Jeremy J. Midgley; Brett P. Murphy; J. Russell-Smith; M. J. Lawes; B. P. Murphy; J. J. Midgley; B P, Murphy; J, Russell-Smith; J J, Midgley; M J, Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.157225822455321\",\"y\":\"-0.438046176985289\",\"labels\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"area_uri\":3,\"area\":\"0106 biological sciences\"}]"} \ No newline at end of file diff --git a/local_dev/tools/db-insertion/OpenAIRE/9d4dc6b920d1e2cc08a741f7c56821db.json b/local_dev/tools/db-insertion/OpenAIRE/9d4dc6b920d1e2cc08a741f7c56821db.json new file mode 100644 index 000000000..b4de756af --- /dev/null +++ b/local_dev/tools/db-insertion/OpenAIRE/9d4dc6b920d1e2cc08a741f7c56821db.json @@ -0,0 +1,3 @@ +{"author":null,"documents":"[{\"id\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"subject\":\"13. Climate action\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"European Geosciences Union\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"fulltext\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"paper_abstract\":\"The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121.\",\"doi\":\"\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Wagner, FH; H\\u00e9rault, B; Bonal, D; Stahl, C; Anderson, LO; Baker, TR; Sebastian Becker, G; Beeckman, H; Boanerges Souza, D; Cesar Botosso, P; Bowman, DMJS; Br\\u00e4uning, A; Brede, B; Irving Brown, F; Julio Camarero, J; Camargo, PB; Cardoso, FCG; Carvalho, FA; Castro, W; Koloski Chagas, R; Chave, J; Chidumayo, EN; Clark, DA; Regina Capellotto Costa, F; Couralet, C; Henrique Da Silva Mauricio, P; Dalitz, H; Resende De Castro, V; Milani, JEDF; Consuelo De Oliveira, E; De Souza Arruda, L; Devineau, JL; Drew, DM; D\\u00fcnisch, O; Durigan, G; Elifuraha, E; Fedele, M; Ferreira Fedele, L; Figueiredo Filho, A; Finger, CAG; C\\u00e9sar Franco, A; Jnior, LF; Galv\\u00e3o, F; Gebrekirstos, A; Gliniars, R; Maur\\u00edcio Lima De Alencastro Gra\\u00e7a, P; Griffiths, AD; Grogan, J; Guan, K; Homeier, J; Raquel Kanieski, M; Khoon Kho, L; Koenig, J; Valerio Kohler, S; Krepkowski, J; Lemos-Filho, JP; Lieberman, D; Eugene Lieberman, M; Sergio Lisi, C; Longhi Santos, T; Ayala, JLL; Eijji Maeda, E; Malhi, Y; Maria, VRB; Marques, MCM; Marques, R; Maza Chamba, H; Mbwambo, L; Liana Lisboa Melga\\u00e7o, K; Angela Mendivelso, H; Murphy, BP; O'Brien, JJ; F Oberbauer, S; Okada, N; Plissier, R; Prior, LD; Alejandro Roig, F; Ross, M; Rodrigo Rossatto, D; Rossi, V; Rowland, L; Rutishauser, E; Santana, H; Schulze, M; Selhorst, D; Rodrigues Silva, W; Silveira, M; Spannl, S; Swaine, MD; Toledo, JJ; Miranda Toledo, M; Toledo, M; Toma, T\",\"subject_orig\":\"13. Climate action\",\"oa_state\":1,\"url\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.395896433436244\",\"y\":\"0.169597229793406\",\"labels\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"subject\":\"0106 biological sciences\",\"title\":\"Plant Traits Demonstrate That Temperate and Tropical Giant Eucalypt Forests Are Ecologically Convergent with Rainforest Not Savanna\",\"year\":\"2013-12-17\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0084378\",\"fulltext\":\"\",\"paper_abstract\":\"Ecological theory differentiates rainforest and open vegetation in many regions as functionally divergent alternative stable states with transitional (ecotonal) vegetation between the two forming transient unstable states. This transitional vegetation is of considerable significance, not only as a test case for theories of vegetation dynamics, but also because this type of vegetation is of major economic importance, and is home to a suite of species of conservation significance, including the world's tallest flowering plants. We therefore created predictions of patterns in plant functional traits that would test the alternative stable states model of these systems. We measured functional traits of 128 trees and shrubs across tropical and temperate rainforest - open vegetation transitions in Australia, with giant eucalypt forests situated between these vegetation types. We analysed a set of functional traits: leaf carbon isotopes, leaf area, leaf mass per area, leaf slenderness, wood density, maximum height and bark thickness, using univariate and multivariate methods. For most traits, giant eucalypt forest was similar to rainforest, while rainforest, particularly tropical rainforest, was significantly different from the open vegetation. In multivariate analyses, tropical and temperate rainforest diverged functionally, and both segregated from open vegetation. Furthermore, the giant eucalypt forests overlapped in function with their respective rainforests. The two types of giant eucalypt forests also exhibited greater overall functional similarity to each other than to any of the open vegetation types. We conclude that tropical and temperate giant eucalypt forests are ecologically and functionally convergent. The lack of clear functional differentiation from rainforest suggests that giant eucalypt forests are unstable states within the basin of attraction of rainforest. Our results have important implications for giant eucalypt forest management.\",\"doi\":\"10.1371\\/journal.pone.0084378\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Greg J. Jordan; David Y. P. Tng; David M. J. S. Bowman; David M J S Bowman; David Y P Tng; Greg J Jordan; Tng, David Y. P.; Jordan, Greg J.; Bowman, David M. J. S.; David M. J. S. Bowman; David Y. P. Tng; Greg J. Jordan; David Y P, Tng; David M J S, Bowman; Greg J, Jordan\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.197639118307433\",\"y\":\"-0.0758870989288165\",\"labels\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"subject\":\"cycle du carbone\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"Copernicus GmbH\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Biogeosciences\",\"link\":\"https:\\/\\/hdl.handle.net\\/10067\\/1447620151162165141\",\"fulltext\":\"https:\\/\\/hal.univ-lorraine.fr\\/hal-01557759\\/document\",\"paper_abstract\":\"\u003Cjats:p\u003EAbstract. The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121.\u003C\\/jats:p\u003E\",\"doi\":\"10.5194\\/bg-13-2537-2016\",\"project_id\":\"LP0219425\",\"accessright\":\"Open Access\",\"authors\":\"Hans Beeckman; Vivien Rossi; Fabr\\u00edcio Alvim Carvalho; Simone Aparecida Vieira; Helmut Dalitz; Franziska Volland; Davi Rodrigo Rossatto; J\\u00e9r\\u00f4me Chave; Rapha\\u00ebl P\\u00e9lissier; Marcio Fedele; Hector Maza Maza Chamba; Kaiyu Guan; Kaiyu Guan; Marisol Toledo; Steven F. Oberbauer; Jos\\u00e9 Julio de Toledo; Cl\\u00e9ment Stahl; Cl\\u00e9ment Stahl; Renato Francisco Rodrigues Marques; Michael D. Swaine; J. Julio Camarero; Karina Melga\\u00e7o; Michael S. Ross; Lucy Rowland; Ervan Rutishauser; Fl\\u00e1via R. C. Costa; Fabien Wagner; Franklin Galv\\u00e3o; Oliver D\\u00fcnisch; Foster Brown; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Marcio Lea Bolzan Zanon; Jean-Louis Devineau; Lynda D. Prior; Pl\\u00ednio Barbosa de Camargo; Joseph J. O'Brien; Lawrence Mbwambo; Carolina V. Castilho; Juan Ignacio Valdez Hern\\u00e1ndez; Marcos Miranda Toledo; Mario Tomazello Filho; Hooz Angela Mendivelso; Achim Br\\u00e4uning; Deborah A. Clark; Jos\\u00e9 Luis L\\u00f3pez Ayala; Marcos Silveira; Jennifer Koenig; Gr\\u00e9groire Vincent; Danilo Boanerges Souza; Claudio Sergio Lisi; Claudio Sergio Lisi; James Grogan; Edilson Consuelo de Oliveira; Wendeson Castro; Jan Verbesselt; Williamar Rodrigues Silva; Brett P. Murphy; Eduardo Eijji Maeda; Luciano de Souza Arruda; Fernanda C. G. Cardoso; M\\u00e1rcia C. M. Marques; Martin Worbes; Sintia Valerio Kohler; Bruno H\\u00e9rault; E. N. Chidumayo; Elisha Elifuraha; Maria Raquel Kanieski; Fidel A. Roig; Robert Gliniars; Giselda Durigan; David M. Drew; Ligia Ferreira Fedele; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Lip Khoon Kho; J\\u00fcrgen Homeier; Mark Schulze; Vivian R. B. Maria; Julia Krepkowski; Timothy R. Baker; Vinicius Resende de Castro; Damien Bonal; Milton Eugene Lieberman; Paulo Cesar Botosso; David M. J. S. Bowman; Camille Couralet; Hellen Paredio Santana; Diana Lieberman; Rubens Koloski Chagas; Jos\\u00e9 P. Lemos-Filho; Jo\\u00e3o Lima Freitas J\\u00fanior; Anthony D. Griffiths; Naoki Okada; Aster Gebrekirstos; Luiz E. O. C. Arag\\u00e3o; Luiz E. O. C. Arag\\u00e3o; Gabriel Sebastian Becker; Yadvinder Malhi; Susanne Spannl; Tomaz Longhi Santos; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Mark Schulze; Timothy R. Baker; Jesus Julio Camarero; Oliver D\\u00fcnisch; Simone Aparecida Vieira; Marcos Miranda Toledo; Kaiyu Guan; Jos\\u00e9 Luis L\\u00f3pez Ayala; Michael D. Swaine; Anthony D. Griffiths; Jos\\u00e9 Pires Lemos-Filho; Deborah A. Clark; Vinicius Resende de Castro; Jos\\u00e9 Julio Toledo; Hooz Angela Mendivelso; Lynda D. Prior; Michael Ross; Diana Lieberman; Claudio Sergio Lisi; Carolina Volkmer de Castilho; Emmanuel N. Chidumayo; Rubens Koloski Chagas; Naoki Okada; Paulo Henrique da Silva Mauricio; Takeshi Toma; Karina Liana Lisboa Melga\\u00e7o; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Maria Raquel Kanieski; Damien Bonal; Camille Couralet; Fidel Alejandro Roig; Renato Marques; Magda Lea Bolzan Zanon; Fabien H. Wagner; Aster Gebrekirstos; Yadvinder Malhi; Lucy Rowland; Gr\\u00e9goire Vincent; Danilo Boanerges Souza; Julia Krepkowski; Hector Maza Chamba; Vivian R. B. Maria; Juan Ignacio Valdez Hern\\u00e1ndez; Milton Eugene Lieberman; Foster Irving Brown; Augusto C\\u00e9sar Franco; Steven F. Oberbauer; J\\u00e9rome Chave; Hellen Santana; Marisol Toledo; Robert Gliniars; Davi Rodrigo Rossatto; Afonso Figueiredo Filho; Tomaz Longhi Santos; Marcia C. M. Marques; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Helmut Dalitz; Giselda Durigan; Achim Br\\u00e4uning; Eduardo Eijji Maeda; Hans Beeckman; Williamar Rodrigues Silva; Pl\\u00ednio Barbosa Camargo; Jo\\u00e3o Lima Freitas J\\u00fanior; Rapha\\u00ebl P\\u00e9lissier; Wendeson Castro; Cl\\u00e9ment Stahl; Jennifer Koenig; Joseph J. O'Brien; Benjamin Brede; David M. J. S. Bowman; Luiz E. O. C. Arag\\u00e3o; Jean-Louis Devineau; Marcio Fedele; Fabr\\u00edcio Alvim Carvalho; Paulo Cesar Botosso; Mario Tomazello Filho; Fernanda C. G. Cardoso; Diogo Selhorst; Flavia Regina Capellotto Costa; Ervan Rutishauser; Sintia Valerio Kohler; Lawrence Mbwambo; J\\u00fcrgen Homeier; Liana O. Anderson; Ja\\u00e7anan Eloisa de Freitas Milani; Marcos Silveira; Brett P. Murphy; Edilson Consuelo de Oliveira; Franziska Volland; Franklin Galv\\u00e3o; Luciano de Souza Arruda; Martin Worbes; David M. Drew; Jan Verbesselt; Susanne Spannl; Ligia Ferreira Fedele; Lip Khoon Kho; Elisha Elifuraha; Gabriel Sebastian Becker; Vivien Rossi; Bruno H\\u00e9rault; James Grogan; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo\",\"subject_orig\":\"cycle du carbone\",\"oa_state\":1,\"url\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.367382118335057\",\"y\":\"0.397753425114482\",\"labels\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"subject\":\"0106 biological sciences\",\"title\":\"Conservative water management in the widespread conifer genus Callitris\",\"year\":\"2013-11-13\",\"publisher\":\"Oxford University Press (OUP)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"AoB PLANTS\",\"link\":\"https:\\/\\/doi.org\\/10.1093\\/aobpla\\/plt052\",\"fulltext\":\"\",\"paper_abstract\":\"Water management by woody species encompasses characters involved in seeking, transporting and evaporating water. Examples of adaptation of individual characters to water availability are common, but little is known about the adaptability of whole-plant water management. Here we use plant hydration and growth to examine variation in whole-plant water management characteristics within the conifer genus Callitris. Using four species that cover the environmental extremes in the Australian continent, we compare seasonal patterns of growth and hydration over 2 years to determine the extent to which species exhibit adaptive variation to the local environment. Detailed measurements of gas exchange in one species are used to produce a hydraulic model to predict changes in leaf water potential throughout the year. This same model, when applied to the remaining three species, provided a close representation of the measured patterns of water potential gradient at all sites, suggesting strong conservation in water management, a conclusion supported by carbon and oxygen isotope measurements in Callitris from across the continent. We conclude that despite its large range in terms of rainfall, Callitris has a conservative water management strategy, characterized by a high sensitivity of growth to rainfall and a delayed (anisohydric) closure of stomata during soil drying.\",\"doi\":\"10.1093\\/aobpla\\/plt052\",\"project_id\":\"FT100100237\",\"accessright\":\"Open Access\",\"authors\":\"Scott Nichols; David M. J. S. Bowman; Lynda D. Prior; Timothy J. Brodribb; Brett P. Murphy; Brett P. Murphy; Pauline F. Grierson; S. Nichols; T. J. Brodribb; P. F. Grierson; D. M. J. S. Bowman; B. P. Murphy; L. D. Prior; Brodribb, Timothy J.; Nichols, Scott; Bowman, David M. J. S.; Murphy, Brett P.; Grierson, Pauline F.; Prior, Lynda D.\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.268025677052877\",\"y\":\"0.18910176812401\",\"labels\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"subject\":\"13. Climate action\",\"title\":\"Are giant eucalypt forests rain forest?\",\"year\":\"2023-01-01\",\"publisher\":\"University Of Tasmania\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/doi.org\\/10.25959\\/23243075\",\"fulltext\":\"\",\"paper_abstract\":\"Forests dominated by giant eucalypts ( eucalypt species with the potential to attain heights exceeding 70m) occur along the Australian east coast in association with rain forest. These forests contribute significantly to the global carbon budget but their ecological classification suffers from ambiguities around the definition of rain forest. The belief that eucalypts are 'sclerophyllous' and therefore not rain forest is a subjective view that has led to problems with conservation policies and management strategies of giant eucalypt forests. Understanding these forests from a global and functional viewpoint is paramount for their effective management. Eucalyptus grandis-dominated giant eucalypt forests in the Wet Tropics of Australia serve as a case study. Observing that rain forest species continuously regenerate in the understories of these eucalypt forests and believing that rain forest incursion will lead to the local elimination of the giant eucalypts, land managers prescribe frequent, low intensity fires. This management strategy is contentious and not underpinned by robust ecological understanding. To resolve these classificatory problems around eucalypts occurring in rain forest, I take a multidisciplinary approach to address the specific question: Are giant eucalypt forests rain forests? To obtain an in depth understanding of the ecology of giant eucalypts and the forests they dominate, and to provide a global context for these systems, I synthesise over a century's worth of literature on these systems (Chapter 2). Based on these data I propose that giant eucalypts are ecologically akin to rain forest emergent pioneers with a unique dependence on fire for regeneration, and that their habitat should be considered a type of secondary rain forest. Using a GIS-based approach I investigate the landscape scale vegetation dynamics of rain forest and E. grandis forest in the Wet Tropics, where E. grandis forests are considered to be threatened (Chapter 3). Using a environmentally stratified sample of sites, I show that rain forest has expanded over the past 50 years, and that this expansion is most likely a response to a global driver such as increased atmospheric CO2 rather than with local environmental factors. Projective modelling of this rain forest expansion predicts that, even at the fastest estimated rate known for the region, it will be more than 2000 years before rain forest fully engulfs giant eucalypt forests. In Chapter 4, I present a seedling growth experiment to examine if the regeneration niche of E. grandis exhibits ecological convergence with that of well-studied temperate giant eucalypts. I show that E. grandis seedlings grow poorly in unburnt rain forest soils because of the unavailability of phosphorus. The addition of phosphorus lifts phosphorus-deficiency symptoms in seedlings in rain forest soils, and accords well with the idea of E. grandis being a rain forest pioneer with the unique requirement of fire as a disturbance mechanism to create suitable open habitats for regeneration. To contextualize the rain forest- giant eucalypt forest - savanna transitions in Australia from a functional and macroecological perspective, I present a plant functional trait analysis of representative plants across these vegetation transitions in both tropical and temperate Australia (Chapter 5). I show that both tropical and temperate giant eucalypt forest are functionally convergent with rain forest and not with savanna. These results suggest that a classification of giant eucalypt forest based on functional attributes of the whole forest will be more useful for management policy than the established classification based on canopy dominants. In conclusion (Chapter 6), the synthesis ofmy landscape ecology and functional biology data supports my overarching hypothesis that giant eucalypt forests are functionally and ecologically rain forests and should be managed as such. I discuss the implications of my research for the management of Wet Tropics giant eucalypt forest and recommend that E. grandis forest should be managed under a regime of total fire suppression. Given that rare natural fires can be expected to occur under this management, the resulting regime will mimic the inherently long fire return times of these systems.\",\"doi\":\"10.25959\\/23247668.v1\",\"project_id\":\"DP0878177\",\"accessright\":\"not available\",\"authors\":\"Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP\",\"subject_orig\":\"13. Climate action\",\"oa_state\":0,\"url\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.246040628440847\",\"y\":\"-0.167350749419719\",\"labels\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"subject\":\"0106 biological sciences\",\"title\":\"Humid tropical rain forest has expanded into eucalypt forest and savanna over the last 50 years\",\"year\":\"2011-11-24\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Ecology and Evolution\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1002\\/ece3.70\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/11343\\/264893\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003ETropical rain forest expansion and savanna woody vegetation thickening appear to be a global trend, but there remains uncertainty about whether there is a common set of global drivers. Using geographic information techniques, we analyzed aerial photography of five areas in the humid tropics of northeastern Queensland, Australia, taken in the 1950s and 2008, to determine if changes in rain forest extent match those reported for the Australian monsoon tropics using similar techniques. Mapping of the 1950s aerial photography showed that of the combined study area (64,430 ha), 63% was classified as eucalypt forests\\/woodland and 37% as rain forest. Our mapping revealed that although most boundaries remained stable, there was a net increase of 732 ha of the original rain forest area over the study period, and negligible conversion of rain forest to eucalypt forest\\/woodland. Statistical modeling, controlling for spatial autocorrelation, indicated distance from preexisting rain forest as the strongest determinant of rain forest expansion. Margin extension had a mean rate across the five sites of 0.6 m per decade. Expansion was greater in tall open forest types but also occurred in shorter, more flammable woodland vegetation types. No correlations were detected with other local variables (aspect, elevation, geology, topography, drainage). Using a geographically weighted mean rate of rain forest margin extension across the whole region, we predict that over 25% of tall open forest (a forest type of high conservation significance) would still remain after 2000 years of rain forest expansion. This slow replacement is due to the convoluted nature of the rain forest boundary and the irregular shape of the tall open forest patches. Our analyses point to the increased concentration of atmospheric CO\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003Eas the most likely global driver of indiscriminate rain forest expansion occurring in northeastern Australia, by increasing tree growth and thereby overriding the effects of fire disturbance.\u003C\\/jats:p\u003E\",\"doi\":\"10.1002\\/ece3.70\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"David Y. P. Tng; Gregor J. Sanders; Ellen Weber; Grant J. Williamson; Brett P. Murphy; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Gregor Sanders; Grant J. Williamson; Ellen Weber; David Y. P. Tng; David Y P, Tng; David M J S, Bowman; Brett P, Murphy; Ellen, Weber; Grant J, Williamson; Gregor, Sanders; Jeanette, Kemp; Murphy, Brett P; Williamson, Grant J; Tng, David Y P; Sanders, Gregor; Kemp, Jeanette; Bowman, David M J S; Weber, Ellen\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.226080980470218\",\"y\":\"-0.155664175951863\",\"labels\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"subject\":\"0301 basic medicine\",\"title\":\"Ancestral stomatal control results in a canalization of fern and lycophyte adaptation to drought\",\"year\":\"2013-02-20\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"New Phytologist\",\"link\":\"https:\\/\\/pubmed.ncbi.nlm.nih.gov\\/23421706\\/\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003ESummary\u003C\\/jats:title\u003E\u003Cjats:p\u003E \u003Cjats:list list-type=\\\"bullet\\\"\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003ELittle is known about how a predominantly passive hydraulic stomatal control in ferns and lycophytes might impact water use under stress. Ferns and lycophytes occupy a diverse array of habitats, from deserts to rainforest canopies, raising the question of whether stomatal behaviour is the same under all ecological strategies and imposes ecological or functional constraints on ferns and lycophytes.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EWe examined the stomatal response of a diverse sample of fern and lycophyte species to both soil and atmospheric water stress, assessing the foliar level of the hormone abscisic acid (\u003Cjats:styled-content style=\\\"fixed-case\\\"\u003EABA\u003C\\/jats:styled-content\u003E) over drought and recovery and the critical leaf water potential (\\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E) at which photosynthesis in droughted leaves failed to recover.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EThe stomata of all ferns and lycophytes showed very predictable responses to soil and atmospheric water deficit via \\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E, while stomatal closure was poorly correlated with changes in ABA. We found that all ferns closed stomata at very low levels of water stress and their survival afterwards was limited only by their capacitance and desiccation tolerance.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EFerns and lycophytes have constrained stomatal responses to soil and atmospheric water deficit as a consequence of a predominantly passive stomatal regulation. This results in a monotypic strategy in ferns and lycophytes under water stress.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003C\\/jats:list\u003E \u003C\\/jats:p\u003E\",\"doi\":\"10.1111\\/nph.12190\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.523766748428778\",\"y\":\"0.152693334034553\",\"labels\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"subject\":\"0106 biological sciences\",\"title\":\"Aborigine\\u2010managed forest, savanna and grassland: biome switching in montane eastern Australia\",\"year\":\"2014-04-10\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1111\\/jbi.12306\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/1885\\/74078\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003ETo assess hypotheses about the role of anthropogenic fire in the maintenance and origin of a fine\\u2010scale vegetation mosaic of rain forest, eucalypt savanna and grassland.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EBunya Mountains, subtropical eastern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EA time series of vegetation maps was compiled from historical and recent aerial photography and field surveys. Geospatial models were constructed of environmental domains for rain forest, savanna and grassland, and for areas of biome change. Grassland soils were analysed for carbon isotope ratios (\\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC), and radiocarbon (\u003Cjats:sup\u003E14\u003C\\/jats:sup\u003EC) dates were acquired for bulk samples from a range of depths.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EAnalysis revealed weak associations between topography and the distribution of rain forest, savanna and grassland, and their patterns of recent change. Grassland occupied an environmental domain intermediate between rain forest and savanna and was more than four times as likely to occur within a matrix of rain forest rather than savanna. There was a large proportional reduction in the area of both grassland (\\u221235%) and savanna (\\u221219%) between 1961 and 2006 because of the expansion of rain forest. However, the greater initial extent of savanna meant that the areal loss of savanna was an order of magnitude greater than for grassland (1433 vs. 146\\u00a0ha). There was no evidence of abrupt changes in \\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC in grassland soil profiles, indicating stability of the vegetation over the last 2000\\u00a0years.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThere is no simple gradient in \\u2018tree suitability\\u2019 from rain forest, through savanna, to treeless grassland on the Bunya Mountains. A general absence of fire since the 19th century has greatly reduced the extent of grassy savanna and grassland formations, to the advantage of rain forest. These results support the hypothesis that the vegetation mosaic on the Bunya Mountains is a cultural artefact and testament to millennia of skilful and persistent burning. We could not conclusively reject the hypothesis that the grasslands are Pleistocene relicts that have declined throughout the Holocene; nonetheless, an explanation more consistent with the evidence overall is that the grasslands must have had periods of expansion during the Holocene, probably as a consequence of severe fires that have destroyed patches of rain forest.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12306\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Butler, Don W.; Fensham, Rod; Murphy, Brett P.; Bury, Sarah J.; Bowman, David M. J. S.; Haberle, Simon; Brett P. Murphy; Sarah J. Bury; David M. J. S. Bowman; Simon G. Haberle; Don W. Butler; Roderick J. Fensham\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.214181365281173\",\"y\":\"-0.281557825509733\",\"labels\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"subject\":\"0106 biological sciences\",\"title\":\"Alternative stable states and the role of fire\\u2013vegetation\\u2013soil feedbacks in the temperate wilderness of southwest Tasmania\",\"year\":\"2011-11-06\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-011-9677-0\",\"fulltext\":\"\",\"paper_abstract\":\"Two ecological models have been put forward to explain the dynamics of fire-promoting and fire-sensitive vegetation in southwest Tasmania: the alternative stable states model of Jackson (in Proc Ecol Soc Aust 3:9\\u201316, 1968) and the sharpening switch model of Mount (in Search 10:180\\u2013186, 1979). Assessing the efficacy of these models requires high resolution spatio-temporal data on whether vegetation patterns are stable or dynamic across landscapes. We analysed ortho-rectified sequences of aerial photography and satellite imagery from 1948, 1988 and 2010 to detect decadal scale changes in forest and non-forest vegetation cover in southwest Tasmania. There was negligible change from forest to non-forest (\u003C0.05%) and only a modest change from non-forest to forest over the study period. Forest cover increased by 4.1% between 1948 and 1988, apparently due to the recovery of forest vegetation following stand-replacing fire prior to 1948. Forest cover increased by 0.8% between 1988 and 2010, reflecting the limited ability of forest to invade treeless areas. The two models include interactions between vegetation, fire and soil, which we investigated by analysing the chemical (phosphorus, nitrogen) and physical properties (clay, silt) of 128 soil samples collected across 34 forest\\u2013non-forest boundaries. Phosphorus in the upper horizon was typically lower in non-forest vegetation compared to forest vegetation, which is consistent with proposed fire\\u2013vegetation\\u2013soil feedbacks. Mineral horizons were dominated by sand, with low levels of clay under all vegetation types. Available field evidence lends support to the Jackson (1968) alternative stable states model as the most suitable model of vegetation dynamics on nutrient poor substrates in southwest Tasmania although modifications of the timeframes for transitions toward rainforest are required.\",\"doi\":\"10.1007\\/s10980-011-9677-0\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Samuel W. Wood; David M. J. S. Bowman; Sam W. Wood\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.363903148059666\",\"y\":\"-0.104475505046146\",\"labels\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"subject\":\"0106 biological sciences\",\"title\":\"Has global environmental change caused monsoon rainforests to expand in the Australian monsoon tropics?\",\"year\":\"2010-06-24\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-010-9496-8\",\"fulltext\":\"\",\"paper_abstract\":\"A large research program in the Australian monsoon tropics has concluded that monsoon rainforests have expanded within the savanna matrix, a trend that has been emulated throughout the tropics worldwide. The driver of the northern Australian trend was not resolved, but it was suggested to be linked to a long-term trend towards wetter climates, atmospheric CO2 enrichment, and changed fire regimes. We review these findings with particular consideration of its analytical and evidentiary basis and plausibility of the global change hypothesis. Field validation has largely demonstrated that the aerial photographic technique that underpinned the previous research is reliable enough to detect rainforest expansion. Statistical modelling demonstrated that the expansion is related to sites with regionally low fire activity, although models are of low explanatory power reflecting the sketchy historical records of fire and feral animal impacts. Field studies show that current fire regimes adjacent to expanding rainforest patches are causing populations of the native conifer Callitris intratropica, an obligate seeder, to crash. Therefore, it is unlikely that changes in fire regimes, which have been deleterious to other fire-sensitive taxa and plant communities in the region, are responsible for the rainforest expansion. We conclude that the expansion of monsoon rainforests is most plausibly linked to the current wetting trend or elevated CO2 concentration. Increases in either water availability or CO2 concentration can potentially overwhelm the negative feedback between fire and rainforest cover that is responsible for the meta-stability of monsoon rainforest boundaries. However, further research at the continental scale, using aerial photography, tree rings and other proxies, is required to evaluate this hypothesis.\",\"doi\":\"10.1007\\/s10980-010-9496-8\",\"project_id\":\"LP0346929\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Daniel S. Banfai; Brett P. Murphy; Brett P. Murphy; Daniel S. Banfai; David M. J. S. Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.188262242757116\",\"y\":\"-0.114417703128843\",\"labels\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"subject\":\"0301 basic medicine\",\"title\":\"Australia\\u2014A Model System for the Development of Pyrogeography\",\"year\":\"2011-04-01\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Fire Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.4996\\/fireecology.0701005\",\"fulltext\":\"\",\"paper_abstract\":\"We define pyrogeography as an integrative, multidisciplinary perspective of landscape fire, its ecological effects, and its relationships with human societies. Like biogeography, this program spans geographic scales from the local to the global, has an evolutionary frame, and thus a geological dimension. And, like other geographic disciplines, pyrogeography has a clear commitment to understanding the interrelationships between cultures and their environment. We illustrate our approach by considering the pyrogeography of Australia. We demonstrate how a long history of fire has had a pervasive influence on the continent\\u2019s biota. While Aborigines coexisted with flammable landscapes for millennia, contemporary Australian society is still learning to live in a land of fire.\",\"doi\":\"10.4996\\/fireecology.0701005\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Brett P. Murphy; David M. J. S. Bowman; Brett P. Murphy; David M. J. S. Bowman\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0561772020500714\",\"y\":\"0.441696304061327\",\"labels\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"subject\":\"0106 biological sciences\",\"title\":\"Fire regimes and woody biomass dynamics in Australian savannas\",\"year\":\"2013-08-30\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/10.1111\\/jbi.12204\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003EMany tropical savannas are undergoing a trend of increasing woody biomass, or \\u2018woody thickening\\u2019. Management to reduce fire frequency and intensity in savannas could substantially increase the amount of carbon stored in woody biomass. We addressed two questions: (1) are northern Australian savannas thickening; and (2) to what extent, and by what demographic processes, does fire affect woody biomass accumulation?\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EThree large national parks, covering 24,000\\u00a0km\u003Cjats:sup\u003E2\u003C\\/jats:sup\u003E, in monsoonal northern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EWe examined changes in woody biomass carbon stocks \\u2013 inferred from tree basal area and the density of woody understorey plants \\u2013 over a 10\\u2010year period in 136 savanna monitoring plots. We statistically assessed these changes in relation to fire frequency and severity. We used a meta\\u2010analysis to identify general trends in woody cover in Australian savannas over the last half\\u2010century.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EWoody biomass carbon stocks were relatively stable across the three national parks, but rates of change were statistically indistinguishable from earlier findings of a weak thickening trend. Change was negatively correlated with fire frequency, particularly the frequency of severe fires. High frequencies of severe fires decreased rates of accumulation of biomass by existing trees (through reductions in tree growth and death of individual stems), rather than whole\\u2010tree mortality and suppression of recruitment. However, across northern Australia, our meta\\u2010analysis identified a general, albeit weak, trend of woody thickening.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThe drivers of northern Australia's weak thickening trend are uncertain, but likely candidates include increasing atmospheric \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E concentration and water availability, and pastoral intensification. We demonstrate that changes to fire management have the potential to either increase or decrease rates of woody thickening relative to any underlying trend. Understanding how savanna fires affect woody biomass, and how fire effects are mediated by climate and \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E, are essential research priorities to predict the fate of savannas.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12204\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Caroline E. R. Lehmann; Caroline E. R. Lehmann; Brett P. Murphy; Brett P. Murphy; Caroline E. R. Lehmann; Jeremy Russell\\u2010Smith; Michael J. Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.250484439327965\",\"y\":\"-0.37778601916065\",\"labels\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"area_uri\":3,\"area\":\"0106 biological sciences\"},{\"id\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"subject\":\"0106 biological sciences\",\"title\":\"Population collapse of a Gondwanan conifer follows the loss of Indigenous fire regimes in a northern Australian savanna\",\"year\":\"2022-05-31\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Scientific Reports\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1038\\/s41598-022-12946-3\",\"fulltext\":\"http:\\/\\/purl.org\\/au-research\\/grants\\/arc\\/DP150101777\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003EColonialism has disrupted Indigenous socioecological systems around the globe, including those supported by intentional landscape burning. Because most disruptions happened centuries ago, our understanding of Indigenous fire management is largely inferential and open to debate. Here, we investigate the ecological consequences of the loss of traditional Aboriginal fire management on fire-exposed savannas on the Arnhem Plateau, northern Australia, using the fire-sensitive conifer \u003Cjats:italic\u003ECallitris intratropica\u003C\\/jats:italic\u003E as a bio-indicator. We contrast Kakadu National Park, where traditional Aboriginal fire management was severely disrupted during the early twentieth century following Aboriginal relocation to surrounding settlements, and an adjacent Aboriginal estate where traditional Aboriginal fire management endures. Since 2006, traditional Aboriginal fire management at this site has been overlaid by a program of broad-scale institutionalized burning in the early dry season, designed to reduce greenhouse emissions. Using remote sensing, field survey, and dendrochronology, we show that on the Aboriginal estate, \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E populations depend on the creation of a shifting patch mosaic of long unburned areas necessary for the recruitment of \u003Cjats:italic\u003EC. intratropica.\u003C\\/jats:italic\u003E However, the imposition of broad-scale fire management is disrupting this population patch dynamic. In Kakadu, there have been extreme declines of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E associated with widespread fires since the mid twentieth century and consequent proliferation of grass fuels. Fire management in Kakadu since 2007, designed to increase the size and abundance of patches of unburned vegetation, has not been able to reverse the population collapse of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E. Our study demonstrates that colonial processes including relocation of Indigenous people and institutional fire management can have deleterious consequences that are nearly irreversible because of hysteresis in \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E population dynamics.\u003C\\/jats:p\u003E\",\"doi\":\"10.1038\\/s41598-022-12946-3\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Bowman, DMJS; Williamson, GJ; Johnston, FH; Bowman, CJW; Murphy, BP; Roos, CI; Trauernicht, C; Rostron, J; Prior, LD; Bowman, DMJS; Prior, LD; Haverkamp, C; Rann, KD; Donald C. Franklin; Sean M. Bellairs; Pascale Taplin; Michael J. Lawes; Brook, B.; Prior, L.; Bowman, D.; Walsh, Angie; Bowman, David M. J. S.; Whitehead, Peter J.; Price, Owen; Rosanne D'Arrigo; Jonathan G. Palmer; Patrick J. Baker; Brittany Dahl; Declan Norrie; Kathryn Allen; Lynda D. Prior; David J. M. S. Bowman; Scott Nichols; Jonathan G. Palmer; Matthew Brookhouse; Ben J. French; David M. J. S. Bowman; David M. J. S. Bowman; Owen Price; Nichols, SC; MacDermott, HJ; Bowman, DMJS; Murphy, BP; Russell-Smith, Jeremy; Yibarbuk, D.; Cooke, P; Bowman, David M. J. S.; Jackson, DM; Whitehead, Peter J.; Fisher, Alaric; Godjuwa, C; Choquenot, D; David M. J. S. Bowman; Stuart Pearson; Kathryn Allen; Quan Hua; Brett P. Murphy; David M. J. S. Bowman; Talia E. Portner; Clay Trauernicht; Wanner, J\\u00fcrgen; Buchbauer, Gerhard; Jirovetz, Leopold; Schmidt, Erich; Bowman, David M. J. S.; Murphy, Brett P.; Roos, Christopher I.; Rostron, Joshua; Williamson, Grant J.; Johnston, Fay H.; Bowman, Clarence J. W.; Trauernicht, Clay; Prior, Lynda D.; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; David M J S, Bowman; Christopher I, Roos; Fay H, Johnston; Brett P, Murphy; Joshua, Rostron; Lynda D, Prior; Grant J, Williamson; Clay, Trauernicht; Clarence J W, Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0231958227792847\",\"y\":\"0.278514210389028\",\"labels\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"subject\":\"0301 basic medicine\",\"title\":\"Unique Responsiveness of Angiosperm Stomata to Elevated CO2 Explained by Calcium Signalling\",\"year\":\"2013-11-20\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0082057\",\"fulltext\":\"\",\"paper_abstract\":\"Angiosperm and conifer tree species respond differently when exposed to elevated CO2, with angiosperms found to dynamically reduce water loss while conifers appear insensitive. Such distinct responses are likely to affect competition between these tree groups as atmospheric CO2 concentration rises. Seeking the mechanism behind this globally important phenomenon we targeted the Ca(2+)-dependent signalling pathway, a mediator of stomatal closure in response to elevated CO2, as a possible explanation for the differentiation of stomatal behaviours. Sampling across the diversity of vascular plants including lycophytes, ferns, gymnosperms and angiosperms we show that only angiosperms possess the stomatal behaviour and prerequisite genetic coding, linked to Ca(2+)-dependent stomatal signalling. We conclude that the evolution of Ca(2+)-dependent stomatal signalling gives angiosperms adaptive benefits in terms of highly efficient water use, but that stomatal sensitivity to high CO2 may penalise angiosperm productivity relative to other plant groups in the current era of soaring atmospheric CO2.\",\"doi\":\"10.1371\\/journal.pone.0082057\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb; Brodribb, Timothy J.; McAdam, Scott A. M.; Timothy J Brodribb; Scott A M McAdam\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.543985837479226\",\"y\":\"0.0858289826142518\",\"labels\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"subject\":\"0106 biological sciences\",\"title\":\"Are the eucalypt and non-eucalypt components of Australian tropical savannas independent?\",\"year\":\"2010-11-10\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Oecologia\",\"link\":\"https:\\/\\/espace.cdu.edu.au\\/view\\/cdu:37682\",\"fulltext\":\"\",\"paper_abstract\":\"Eucalypts (Eucalyptus and Corymbia spp.) dominate (60%) the tree biomass of Australia's tropical savannas but account for only a fraction (28%) of the tree diversity. Because of their considerable biomass and adaptation to environmental stressors, such as fire, the eucalypts may drive tree dynamics in these savannas, possibly to the exclusion of non-eucalypts. We evaluated whether the eucalypt and non-eucalypt components in tropical savannas are dependent so that changes in one component are matched by opposite trends in the other. Using tree inventory data from 127 savanna sites across the rainfall and fire frequency gradients, we found that eucalypt and non-eucalypt basal area and species richness had a negative relationship. This relationship was maintained across the rainfall gradient, with rainfall having a positive effect on the basal area and species richness of both components, but with a greater effect in non-eucalypts. Fire frequency negatively affected basal area, but not species richness, although basal area and species richness of eucalypts and non-eucalypts did not differ in their response to fire. Rainfall appears to set the upper bounds to woody biomass in these mesic savannas, while fire maintains woody biomass below carrying capacity and facilitates coexistence of the components. The magnitude of the component responses, particularly for non-eucalypts, is determined by rainfall, but their dependence is likely due to their differential response to both rainfall and fire, but not to competition for resources. Thus, while eucalypts dominate biomass overall, at high rainfall sites non-eucalypt basal area and diversity are highest, especially where fire frequency is low.\",\"doi\":\"10.1007\\/s00442-010-1829-4\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Jeremy J. Midgley; Brett P. Murphy; J. Russell-Smith; M. J. Lawes; B. P. Murphy; J. J. Midgley; B P, Murphy; J, Russell-Smith; J J, Midgley; M J, Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.157225822455321\",\"y\":\"-0.438046176985289\",\"labels\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"area_uri\":3,\"area\":\"0106 biological sciences\"}]"} + + diff --git a/local_dev/tools/db-insertion/OpenAIRE/config.json b/local_dev/tools/db-insertion/OpenAIRE/config.json new file mode 100644 index 000000000..42c109d91 --- /dev/null +++ b/local_dev/tools/db-insertion/OpenAIRE/config.json @@ -0,0 +1,15 @@ +{ + "endpoint": "http://127.0.0.1:8081/dev/persistence/createVisualization/dev", + "visualizations": [ + { + "vis_id": "9d4dc6b920d1e2cc08a741f7c56821db", + "vis_title": "openaire", + "vis_clean_query": "DP0878177", + "vis_query": "DP0878177", + "vis_params": "{\"project_id\":\"DP0878177\",\"funder\":\"ARC\",\"acronym\":\"\",\"title\":\"Understanding the impact of global environmental change on Australian forests and woodlands using rainforest boundaries and Callitris growth as bio-indicators\",\"start_date\":\"2008-01-01\",\"end_date\":\"2011-12-31\",\"special_clause\":\"false\",\"oa_mandate\":\"false\",\"organisations\":[],\"openaire_link\":\"http:\\/\\/purl.org\\/au-research\\/grants\\/arc\\/DP0878177\",\"obj_id\":\"arc_________::fe52f7d04f4139c2c80b4144c294f12d\",\"call_id\":\"\",\"funding_tree\":[null,null,\"Discovery Projects\"]}", + "data_file": "9d4dc6b920d1e2cc08a741f7c56821db.json" + } + ] +} + + diff --git a/local_dev/tools/db-insertion/insert.py b/local_dev/tools/db-insertion/insert.py new file mode 100644 index 000000000..2725f31bb --- /dev/null +++ b/local_dev/tools/db-insertion/insert.py @@ -0,0 +1,49 @@ +import json +import requests + +from pathlib import Path + +# Before starting, you can change the path to the configuration for the desired integration and set of files. +BASE_DIR = Path(__file__).resolve().parent +CONFIG_PATH = BASE_DIR / "OpenAIRE" / "config.json" # Change integration folder name here. + +# Fallbacks +VISUALIZATION_DATA = [] +ENDPOINT_URL = "http://127.0.0.1:8081/dev/persistence/createVisualization/dev" + + +def insert_from_config(config_path: Path) -> None: + """Insert visualizations described in the given config JSON file.""" + with open(config_path, "r") as f: + config = json.load(f) + + endpoint = config.get("endpoint", ENDPOINT_URL) + visualizations = config.get("visualizations", VISUALIZATION_DATA) + + for vis in visualizations: + data_file = config_path.parent / vis["data_file"] + with open(data_file, "r") as df: + data = df.read() + + payload = { + "vis_id": vis["vis_id"], + "vis_title": vis["vis_title"], + "vis_clean_query": vis["vis_clean_query"], + "vis_query": vis["vis_query"], + "vis_params": vis["vis_params"], + "data": data, + } + + res = requests.post(endpoint, json=payload) + print(f"Inserted {vis['vis_id']}: {res.status_code}") + print(res.text) + + +def main() -> None: + insert_from_config(CONFIG_PATH) + + +if __name__ == "__main__": + main() + + diff --git a/local_dev/tools/insert_visualization.py b/local_dev/tools/insert_visualization.py deleted file mode 100644 index 0e61766c2..000000000 --- a/local_dev/tools/insert_visualization.py +++ /dev/null @@ -1,31 +0,0 @@ -import requests - -def insert_visualization(vis_id): - # load the vis data from file - with open(f"{vis_id}.json", "r") as f: - data = f.read() - - payload = {} - payload["vis_id"] = vis_id - payload['vis_title'] = 'openaire' - payload['vis_clean_query'] = 'DP0878177' - payload['vis_query'] = 'DP0878177' - payload['vis_params'] = "{\"project_id\":\"863420\",\"funder\":\"EC\",\"acronym\":\"TRIPLE\",\"title\":\"Transforming Research through Innovative Practices for Linked interdisciplinary Exploration\",\"start_date\":\"2019-10-01\",\"end_date\":\"2023-03-31\",\"special_clause\":\"false\",\"oa_mandate\":\"true\",\"organisations\":[{\"long_name\":\"OPEN ACCESS IN THE EUROPEAN AREA THROUGH SCHOLARLY COMMUNICATION\",\"name\":\"OPERAS\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::8e77235c99a60c0a1a3a21209ca0e0d9\",\"url\":\"23\",\"website\":\"https:\\\/\\\/www.operas-eu.org\\\/\"},{\"long_name\":\"CESSDA ERIC\",\"name\":\"CESSDA ERIC\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::89963b4d1d1aacf5e11126f162ced9d4\",\"url\":\"21\",\"website\":\"https:\\\/\\\/www.cessda.eu\"},{\"long_name\":\"National Research Council\",\"name\":\"CNR\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::d41cf6bd4ab1b1362a44397e0b95c975\",\"url\":\"1\",\"website\":\"http:\\\/\\\/cnr.it\"},{\"long_name\":\"Polish Academy of Sciences\",\"name\":\"PAN\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::f541cd098bd22df66e81d8b34a7238c2\",\"url\":\"11\",\"website\":\"http:\\\/\\\/www.english.pan.pl\\\/\"},{\"long_name\":\"ETHNIKO KENTRO TEKMIRIOSIS KAI ILEKTRONIKOU PERIECHOMENOU\",\"name\":\"NATIONAL DOCUMENTATION CENTER - EKT\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::d0053bbb2c9cb7695adfbe288607fb47\",\"url\":\"10\",\"website\":\"http:\\\/\\\/www.ekt.gr\"},{\"long_name\":\"MEOH\",\"name\":\"MEOH\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::b9a7cc1c6a9920dbe053d3efae57dbfe\",\"url\":\"15\",\"website\":\"http:\\\/\\\/www.meoh.io\"},{\"long_name\":\"University of Coimbra\",\"name\":\"University of Coimbra\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::6c93cc20a992d88c8dff2a8fbcf95034\",\"url\":\"18\",\"website\":\"http:\\\/\\\/www.uc.pt\\\/en\"},{\"long_name\":\"STICHTING OAPEN*OPEN ACCESS PUBLISHING IN EUROPEAN NETWORKS\",\"name\":\"OAPEN\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::2b5ba79556e43f244f0c26a6c24fd789\",\"url\":\"17\",\"website\":\"http:\\\/\\\/www.oapen.org\"},{\"long_name\":\"CLARIN ERIC\",\"name\":\"CLARIN\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::ae84e04d1bb09ceec2f041532ad7175c\",\"url\":\"6\",\"website\":\"http:\\\/\\\/www.clarin.eu\"},{\"long_name\":\"Max Weber Foundation International Humanities\",\"name\":\"Max Weber Foundation International Humanities\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::742f75a4a5e1f18ca0eabc3aabe8bada\",\"url\":\"14\",\"website\":\"http:\\\/\\\/www.maxweberstiftung.de\\\/en\\\/\"},{\"long_name\":\"LEXICAL COMPUTING CZ SRO\",\"name\":\"LEXICAL COMPUTING CZ SRO\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::57fd8a7587373534430b01e9d14356c7\",\"url\":\"13\",\"website\":\"http:\\\/\\\/www.lexicalcomputing.cz\"},{\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=raid________::4a6054901382c4e0eed47ccacf25fc34\",\"url\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=raid________::4a6054901382c4e0eed47ccacf25fc34\"},{\"long_name\":\"THE UNIVERSITY COURT OF THE UNIVERSITY OF ABERTAY DUNDEE\",\"name\":\"AU\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::ce2ac95955a865a53965139a9222c65f\",\"url\":\"5\",\"website\":\"http:\\\/\\\/www.abertay.ac.uk\"},{\"long_name\":\"University of Zadar\",\"name\":\"University of Zadar\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::5e91b35f34a6d4ead6432ef2f77d24bf\",\"url\":\"19\",\"website\":\"http:\\\/\\\/www.unizd.hr\\\/\"},{\"long_name\":\"CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS\",\"name\":\"CNRS\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::26e8a1e6dd6e5594324513fee4a9ef03\",\"url\":\"7\",\"website\":\"http:\\\/\\\/www.cnrs.fr\"},{\"long_name\":\"National Hellenic Research Foundation\",\"name\":\"NHRF\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::a8388d42d1556dd85a539cf673583737\",\"url\":\"9\",\"website\":\"http:\\\/\\\/www.eie.gr\\\/index-en.html\"},{\"long_name\":\"MEDIRI GMBH\",\"name\":\"mediri GmbH\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::ce951878644e3fec61c3971a2218af3a\",\"url\":\"3\",\"website\":\"http:\\\/\\\/mediri.com\"},{\"long_name\":\"Digital Research Infrastructure for the Arts and Humanities\",\"name\":\"DARIAH-EU\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::f0c3e27c112272a3781226c5890b228c\",\"url\":\"22\",\"website\":\"https:\\\/\\\/www.dariah.eu\\\/\"},{\"long_name\":\"Know Center\",\"name\":\"Know Center\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::97c459087092b424064b282a954f7000\",\"url\":\"12\",\"website\":\"http:\\\/\\\/www.know-center.tugraz.at\\\/en\\\/\"},{\"long_name\":\"Institute of Literary Research\",\"name\":\"IBL PAN\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::63ff1693d98443d5fbd457e85055e093\",\"url\":\"2\",\"website\":\"http:\\\/\\\/ibl.waw.pl\\\/en\"},{\"long_name\":\"FOXCUB\",\"name\":\"FOXCUB\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::c953b9ecd40cf9073476b90fe81ec740\",\"url\":\"20\",\"website\":\"https:\\\/\\\/foxcub.fr\\\/\"},{\"long_name\":\"European Grid Infrastructure Foundation\",\"name\":\"EGI\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=openorgs____::0998a1d4dbfc5025ad963eeb2306969c\",\"url\":\"8\",\"website\":\"http:\\\/\\\/www.egi.eu\\\/\"},{\"long_name\":\"NET7 SRL\",\"name\":\"NET7\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::9af4acee6dfce664c803b65b2c60b071\",\"url\":\"16\",\"website\":\"http:\\\/\\\/www.netseven.it\"},{\"long_name\":\"OPEN KNOWLEDGE MAPS - VEREIN ZUR FORDERUNG DER SICHTBARKEIT WISSENSCHAFTLICHEN WISSENS\",\"name\":\"OPEN KNOWLEDGE MAPS - VEREIN ZUR FORDERUNG DER SICHTBARKEIT WISSENSCHAFTLICHEN WISSENS\",\"org_id\":\"https:\\\/\\\/www.openaire.eu\\\/search\\\/organization?organizationId=pending_org_::f76b7a308a8069b5630399110a715935\",\"url\":\"4\",\"website\":\"http:\\\/\\\/openknowledgemaps.org\"}],\"openaire_link\":\"https:\\\/\\\/www.operas-eu.org\\\/\",\"obj_id\":\"corda__h2020::94b1b8e5309715e7aa2ab9d87dcc1dfe\",\"call_id\":\"H2020-INFRAEOSC-2019-1\",\"funding_tree\":[null,\"RIA\",\"H2020\"]}" - payload["data"] = data - - # the post target may need to be adjusted to work with the current local docker network - res = requests.post("http://127.0.0.1:8081/dev/persistence/createVisualization/dev", - json=payload) - print(res.status_code) - print(res.text) - - -def main(): - vis_ids = [ - "9d4dc6b920d1e2cc08a741f7c56821db" - ] - for vis_id in vis_ids: - insert_visualization(vis_id) - -if __name__ == "__main__": - main() \ No newline at end of file From 215a9f0a28d444a4deb8be2a6f4a23cbe188d5c0 Mon Sep 17 00:00:00 2001 From: andrei Date: Wed, 3 Dec 2025 12:49:51 +0100 Subject: [PATCH 09/11] feat: BASE example --- .../BASE/81abae6d3af6e47761e2a761a47c2c11.json | 1 + local_dev/tools/db-insertion/BASE/config.json | 15 +++++++++++++++ .../9d4dc6b920d1e2cc08a741f7c56821db.json | 4 +--- 3 files changed, 17 insertions(+), 3 deletions(-) create mode 100644 local_dev/tools/db-insertion/BASE/81abae6d3af6e47761e2a761a47c2c11.json create mode 100644 local_dev/tools/db-insertion/BASE/config.json diff --git a/local_dev/tools/db-insertion/BASE/81abae6d3af6e47761e2a761a47c2c11.json b/local_dev/tools/db-insertion/BASE/81abae6d3af6e47761e2a761a47c2c11.json new file mode 100644 index 000000000..6e0ff1014 --- /dev/null +++ b/local_dev/tools/db-insertion/BASE/81abae6d3af6e47761e2a761a47c2c11.json @@ -0,0 +1 @@ +{"author":null,"documents":"[]"} \ No newline at end of file diff --git a/local_dev/tools/db-insertion/BASE/config.json b/local_dev/tools/db-insertion/BASE/config.json new file mode 100644 index 000000000..d5ae2dc0e --- /dev/null +++ b/local_dev/tools/db-insertion/BASE/config.json @@ -0,0 +1,15 @@ +{ + "endpoint": "http://127.0.0.1:8081/dev/persistence/createVisualization/dev", + "visualizations": [ + { + "vis_id": "81abae6d3af6e47761e2a761a47c2c11", + "vis_title": "base", + "vis_clean_query": "digital education", + "vis_query": "digital education", + "vis_params": "{\"from\":\"1665-01-01\",\"to\":\"2025-12-03\",\"document_types\":[\"121\"],\"sorting\":\"most-relevant\",\"min_descsize\":\"300\",\"lang_id\":[\"all-lang\"]}", + "data_file": "81abae6d3af6e47761e2a761a47c2c11.json" + } + ] +} + + diff --git a/local_dev/tools/db-insertion/OpenAIRE/9d4dc6b920d1e2cc08a741f7c56821db.json b/local_dev/tools/db-insertion/OpenAIRE/9d4dc6b920d1e2cc08a741f7c56821db.json index b4de756af..27af992cb 100644 --- a/local_dev/tools/db-insertion/OpenAIRE/9d4dc6b920d1e2cc08a741f7c56821db.json +++ b/local_dev/tools/db-insertion/OpenAIRE/9d4dc6b920d1e2cc08a741f7c56821db.json @@ -1,3 +1 @@ -{"author":null,"documents":"[{\"id\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"subject\":\"13. Climate action\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"European Geosciences Union\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"fulltext\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"paper_abstract\":\"The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121.\",\"doi\":\"\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Wagner, FH; H\\u00e9rault, B; Bonal, D; Stahl, C; Anderson, LO; Baker, TR; Sebastian Becker, G; Beeckman, H; Boanerges Souza, D; Cesar Botosso, P; Bowman, DMJS; Br\\u00e4uning, A; Brede, B; Irving Brown, F; Julio Camarero, J; Camargo, PB; Cardoso, FCG; Carvalho, FA; Castro, W; Koloski Chagas, R; Chave, J; Chidumayo, EN; Clark, DA; Regina Capellotto Costa, F; Couralet, C; Henrique Da Silva Mauricio, P; Dalitz, H; Resende De Castro, V; Milani, JEDF; Consuelo De Oliveira, E; De Souza Arruda, L; Devineau, JL; Drew, DM; D\\u00fcnisch, O; Durigan, G; Elifuraha, E; Fedele, M; Ferreira Fedele, L; Figueiredo Filho, A; Finger, CAG; C\\u00e9sar Franco, A; Jnior, LF; Galv\\u00e3o, F; Gebrekirstos, A; Gliniars, R; Maur\\u00edcio Lima De Alencastro Gra\\u00e7a, P; Griffiths, AD; Grogan, J; Guan, K; Homeier, J; Raquel Kanieski, M; Khoon Kho, L; Koenig, J; Valerio Kohler, S; Krepkowski, J; Lemos-Filho, JP; Lieberman, D; Eugene Lieberman, M; Sergio Lisi, C; Longhi Santos, T; Ayala, JLL; Eijji Maeda, E; Malhi, Y; Maria, VRB; Marques, MCM; Marques, R; Maza Chamba, H; Mbwambo, L; Liana Lisboa Melga\\u00e7o, K; Angela Mendivelso, H; Murphy, BP; O'Brien, JJ; F Oberbauer, S; Okada, N; Plissier, R; Prior, LD; Alejandro Roig, F; Ross, M; Rodrigo Rossatto, D; Rossi, V; Rowland, L; Rutishauser, E; Santana, H; Schulze, M; Selhorst, D; Rodrigues Silva, W; Silveira, M; Spannl, S; Swaine, MD; Toledo, JJ; Miranda Toledo, M; Toledo, M; Toma, T\",\"subject_orig\":\"13. Climate action\",\"oa_state\":1,\"url\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.395896433436244\",\"y\":\"0.169597229793406\",\"labels\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"subject\":\"0106 biological sciences\",\"title\":\"Plant Traits Demonstrate That Temperate and Tropical Giant Eucalypt Forests Are Ecologically Convergent with Rainforest Not Savanna\",\"year\":\"2013-12-17\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0084378\",\"fulltext\":\"\",\"paper_abstract\":\"Ecological theory differentiates rainforest and open vegetation in many regions as functionally divergent alternative stable states with transitional (ecotonal) vegetation between the two forming transient unstable states. This transitional vegetation is of considerable significance, not only as a test case for theories of vegetation dynamics, but also because this type of vegetation is of major economic importance, and is home to a suite of species of conservation significance, including the world's tallest flowering plants. We therefore created predictions of patterns in plant functional traits that would test the alternative stable states model of these systems. We measured functional traits of 128 trees and shrubs across tropical and temperate rainforest - open vegetation transitions in Australia, with giant eucalypt forests situated between these vegetation types. We analysed a set of functional traits: leaf carbon isotopes, leaf area, leaf mass per area, leaf slenderness, wood density, maximum height and bark thickness, using univariate and multivariate methods. For most traits, giant eucalypt forest was similar to rainforest, while rainforest, particularly tropical rainforest, was significantly different from the open vegetation. In multivariate analyses, tropical and temperate rainforest diverged functionally, and both segregated from open vegetation. Furthermore, the giant eucalypt forests overlapped in function with their respective rainforests. The two types of giant eucalypt forests also exhibited greater overall functional similarity to each other than to any of the open vegetation types. We conclude that tropical and temperate giant eucalypt forests are ecologically and functionally convergent. The lack of clear functional differentiation from rainforest suggests that giant eucalypt forests are unstable states within the basin of attraction of rainforest. Our results have important implications for giant eucalypt forest management.\",\"doi\":\"10.1371\\/journal.pone.0084378\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Greg J. Jordan; David Y. P. Tng; David M. J. S. Bowman; David M J S Bowman; David Y P Tng; Greg J Jordan; Tng, David Y. P.; Jordan, Greg J.; Bowman, David M. J. S.; David M. J. S. Bowman; David Y. P. Tng; Greg J. Jordan; David Y P, Tng; David M J S, Bowman; Greg J, Jordan\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.197639118307433\",\"y\":\"-0.0758870989288165\",\"labels\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"subject\":\"cycle du carbone\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"Copernicus GmbH\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Biogeosciences\",\"link\":\"https:\\/\\/hdl.handle.net\\/10067\\/1447620151162165141\",\"fulltext\":\"https:\\/\\/hal.univ-lorraine.fr\\/hal-01557759\\/document\",\"paper_abstract\":\"\u003Cjats:p\u003EAbstract. The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121.\u003C\\/jats:p\u003E\",\"doi\":\"10.5194\\/bg-13-2537-2016\",\"project_id\":\"LP0219425\",\"accessright\":\"Open Access\",\"authors\":\"Hans Beeckman; Vivien Rossi; Fabr\\u00edcio Alvim Carvalho; Simone Aparecida Vieira; Helmut Dalitz; Franziska Volland; Davi Rodrigo Rossatto; J\\u00e9r\\u00f4me Chave; Rapha\\u00ebl P\\u00e9lissier; Marcio Fedele; Hector Maza Maza Chamba; Kaiyu Guan; Kaiyu Guan; Marisol Toledo; Steven F. Oberbauer; Jos\\u00e9 Julio de Toledo; Cl\\u00e9ment Stahl; Cl\\u00e9ment Stahl; Renato Francisco Rodrigues Marques; Michael D. Swaine; J. Julio Camarero; Karina Melga\\u00e7o; Michael S. Ross; Lucy Rowland; Ervan Rutishauser; Fl\\u00e1via R. C. Costa; Fabien Wagner; Franklin Galv\\u00e3o; Oliver D\\u00fcnisch; Foster Brown; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Marcio Lea Bolzan Zanon; Jean-Louis Devineau; Lynda D. Prior; Pl\\u00ednio Barbosa de Camargo; Joseph J. O'Brien; Lawrence Mbwambo; Carolina V. Castilho; Juan Ignacio Valdez Hern\\u00e1ndez; Marcos Miranda Toledo; Mario Tomazello Filho; Hooz Angela Mendivelso; Achim Br\\u00e4uning; Deborah A. Clark; Jos\\u00e9 Luis L\\u00f3pez Ayala; Marcos Silveira; Jennifer Koenig; Gr\\u00e9groire Vincent; Danilo Boanerges Souza; Claudio Sergio Lisi; Claudio Sergio Lisi; James Grogan; Edilson Consuelo de Oliveira; Wendeson Castro; Jan Verbesselt; Williamar Rodrigues Silva; Brett P. Murphy; Eduardo Eijji Maeda; Luciano de Souza Arruda; Fernanda C. G. Cardoso; M\\u00e1rcia C. M. Marques; Martin Worbes; Sintia Valerio Kohler; Bruno H\\u00e9rault; E. N. Chidumayo; Elisha Elifuraha; Maria Raquel Kanieski; Fidel A. Roig; Robert Gliniars; Giselda Durigan; David M. Drew; Ligia Ferreira Fedele; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Lip Khoon Kho; J\\u00fcrgen Homeier; Mark Schulze; Vivian R. B. Maria; Julia Krepkowski; Timothy R. Baker; Vinicius Resende de Castro; Damien Bonal; Milton Eugene Lieberman; Paulo Cesar Botosso; David M. J. S. Bowman; Camille Couralet; Hellen Paredio Santana; Diana Lieberman; Rubens Koloski Chagas; Jos\\u00e9 P. Lemos-Filho; Jo\\u00e3o Lima Freitas J\\u00fanior; Anthony D. Griffiths; Naoki Okada; Aster Gebrekirstos; Luiz E. O. C. Arag\\u00e3o; Luiz E. O. C. Arag\\u00e3o; Gabriel Sebastian Becker; Yadvinder Malhi; Susanne Spannl; Tomaz Longhi Santos; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Mark Schulze; Timothy R. Baker; Jesus Julio Camarero; Oliver D\\u00fcnisch; Simone Aparecida Vieira; Marcos Miranda Toledo; Kaiyu Guan; Jos\\u00e9 Luis L\\u00f3pez Ayala; Michael D. Swaine; Anthony D. Griffiths; Jos\\u00e9 Pires Lemos-Filho; Deborah A. Clark; Vinicius Resende de Castro; Jos\\u00e9 Julio Toledo; Hooz Angela Mendivelso; Lynda D. Prior; Michael Ross; Diana Lieberman; Claudio Sergio Lisi; Carolina Volkmer de Castilho; Emmanuel N. Chidumayo; Rubens Koloski Chagas; Naoki Okada; Paulo Henrique da Silva Mauricio; Takeshi Toma; Karina Liana Lisboa Melga\\u00e7o; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Maria Raquel Kanieski; Damien Bonal; Camille Couralet; Fidel Alejandro Roig; Renato Marques; Magda Lea Bolzan Zanon; Fabien H. Wagner; Aster Gebrekirstos; Yadvinder Malhi; Lucy Rowland; Gr\\u00e9goire Vincent; Danilo Boanerges Souza; Julia Krepkowski; Hector Maza Chamba; Vivian R. B. Maria; Juan Ignacio Valdez Hern\\u00e1ndez; Milton Eugene Lieberman; Foster Irving Brown; Augusto C\\u00e9sar Franco; Steven F. Oberbauer; J\\u00e9rome Chave; Hellen Santana; Marisol Toledo; Robert Gliniars; Davi Rodrigo Rossatto; Afonso Figueiredo Filho; Tomaz Longhi Santos; Marcia C. M. Marques; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Helmut Dalitz; Giselda Durigan; Achim Br\\u00e4uning; Eduardo Eijji Maeda; Hans Beeckman; Williamar Rodrigues Silva; Pl\\u00ednio Barbosa Camargo; Jo\\u00e3o Lima Freitas J\\u00fanior; Rapha\\u00ebl P\\u00e9lissier; Wendeson Castro; Cl\\u00e9ment Stahl; Jennifer Koenig; Joseph J. O'Brien; Benjamin Brede; David M. J. S. Bowman; Luiz E. O. C. Arag\\u00e3o; Jean-Louis Devineau; Marcio Fedele; Fabr\\u00edcio Alvim Carvalho; Paulo Cesar Botosso; Mario Tomazello Filho; Fernanda C. G. Cardoso; Diogo Selhorst; Flavia Regina Capellotto Costa; Ervan Rutishauser; Sintia Valerio Kohler; Lawrence Mbwambo; J\\u00fcrgen Homeier; Liana O. Anderson; Ja\\u00e7anan Eloisa de Freitas Milani; Marcos Silveira; Brett P. Murphy; Edilson Consuelo de Oliveira; Franziska Volland; Franklin Galv\\u00e3o; Luciano de Souza Arruda; Martin Worbes; David M. Drew; Jan Verbesselt; Susanne Spannl; Ligia Ferreira Fedele; Lip Khoon Kho; Elisha Elifuraha; Gabriel Sebastian Becker; Vivien Rossi; Bruno H\\u00e9rault; James Grogan; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo\",\"subject_orig\":\"cycle du carbone\",\"oa_state\":1,\"url\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.367382118335057\",\"y\":\"0.397753425114482\",\"labels\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"subject\":\"0106 biological sciences\",\"title\":\"Conservative water management in the widespread conifer genus Callitris\",\"year\":\"2013-11-13\",\"publisher\":\"Oxford University Press (OUP)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"AoB PLANTS\",\"link\":\"https:\\/\\/doi.org\\/10.1093\\/aobpla\\/plt052\",\"fulltext\":\"\",\"paper_abstract\":\"Water management by woody species encompasses characters involved in seeking, transporting and evaporating water. Examples of adaptation of individual characters to water availability are common, but little is known about the adaptability of whole-plant water management. Here we use plant hydration and growth to examine variation in whole-plant water management characteristics within the conifer genus Callitris. Using four species that cover the environmental extremes in the Australian continent, we compare seasonal patterns of growth and hydration over 2 years to determine the extent to which species exhibit adaptive variation to the local environment. Detailed measurements of gas exchange in one species are used to produce a hydraulic model to predict changes in leaf water potential throughout the year. This same model, when applied to the remaining three species, provided a close representation of the measured patterns of water potential gradient at all sites, suggesting strong conservation in water management, a conclusion supported by carbon and oxygen isotope measurements in Callitris from across the continent. We conclude that despite its large range in terms of rainfall, Callitris has a conservative water management strategy, characterized by a high sensitivity of growth to rainfall and a delayed (anisohydric) closure of stomata during soil drying.\",\"doi\":\"10.1093\\/aobpla\\/plt052\",\"project_id\":\"FT100100237\",\"accessright\":\"Open Access\",\"authors\":\"Scott Nichols; David M. J. S. Bowman; Lynda D. Prior; Timothy J. Brodribb; Brett P. Murphy; Brett P. Murphy; Pauline F. Grierson; S. Nichols; T. J. Brodribb; P. F. Grierson; D. M. J. S. Bowman; B. P. Murphy; L. D. Prior; Brodribb, Timothy J.; Nichols, Scott; Bowman, David M. J. S.; Murphy, Brett P.; Grierson, Pauline F.; Prior, Lynda D.\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.268025677052877\",\"y\":\"0.18910176812401\",\"labels\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"subject\":\"13. Climate action\",\"title\":\"Are giant eucalypt forests rain forest?\",\"year\":\"2023-01-01\",\"publisher\":\"University Of Tasmania\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/doi.org\\/10.25959\\/23243075\",\"fulltext\":\"\",\"paper_abstract\":\"Forests dominated by giant eucalypts ( eucalypt species with the potential to attain heights exceeding 70m) occur along the Australian east coast in association with rain forest. These forests contribute significantly to the global carbon budget but their ecological classification suffers from ambiguities around the definition of rain forest. The belief that eucalypts are 'sclerophyllous' and therefore not rain forest is a subjective view that has led to problems with conservation policies and management strategies of giant eucalypt forests. Understanding these forests from a global and functional viewpoint is paramount for their effective management. Eucalyptus grandis-dominated giant eucalypt forests in the Wet Tropics of Australia serve as a case study. Observing that rain forest species continuously regenerate in the understories of these eucalypt forests and believing that rain forest incursion will lead to the local elimination of the giant eucalypts, land managers prescribe frequent, low intensity fires. This management strategy is contentious and not underpinned by robust ecological understanding. To resolve these classificatory problems around eucalypts occurring in rain forest, I take a multidisciplinary approach to address the specific question: Are giant eucalypt forests rain forests? To obtain an in depth understanding of the ecology of giant eucalypts and the forests they dominate, and to provide a global context for these systems, I synthesise over a century's worth of literature on these systems (Chapter 2). Based on these data I propose that giant eucalypts are ecologically akin to rain forest emergent pioneers with a unique dependence on fire for regeneration, and that their habitat should be considered a type of secondary rain forest. Using a GIS-based approach I investigate the landscape scale vegetation dynamics of rain forest and E. grandis forest in the Wet Tropics, where E. grandis forests are considered to be threatened (Chapter 3). Using a environmentally stratified sample of sites, I show that rain forest has expanded over the past 50 years, and that this expansion is most likely a response to a global driver such as increased atmospheric CO2 rather than with local environmental factors. Projective modelling of this rain forest expansion predicts that, even at the fastest estimated rate known for the region, it will be more than 2000 years before rain forest fully engulfs giant eucalypt forests. In Chapter 4, I present a seedling growth experiment to examine if the regeneration niche of E. grandis exhibits ecological convergence with that of well-studied temperate giant eucalypts. I show that E. grandis seedlings grow poorly in unburnt rain forest soils because of the unavailability of phosphorus. The addition of phosphorus lifts phosphorus-deficiency symptoms in seedlings in rain forest soils, and accords well with the idea of E. grandis being a rain forest pioneer with the unique requirement of fire as a disturbance mechanism to create suitable open habitats for regeneration. To contextualize the rain forest- giant eucalypt forest - savanna transitions in Australia from a functional and macroecological perspective, I present a plant functional trait analysis of representative plants across these vegetation transitions in both tropical and temperate Australia (Chapter 5). I show that both tropical and temperate giant eucalypt forest are functionally convergent with rain forest and not with savanna. These results suggest that a classification of giant eucalypt forest based on functional attributes of the whole forest will be more useful for management policy than the established classification based on canopy dominants. In conclusion (Chapter 6), the synthesis ofmy landscape ecology and functional biology data supports my overarching hypothesis that giant eucalypt forests are functionally and ecologically rain forests and should be managed as such. I discuss the implications of my research for the management of Wet Tropics giant eucalypt forest and recommend that E. grandis forest should be managed under a regime of total fire suppression. Given that rare natural fires can be expected to occur under this management, the resulting regime will mimic the inherently long fire return times of these systems.\",\"doi\":\"10.25959\\/23247668.v1\",\"project_id\":\"DP0878177\",\"accessright\":\"not available\",\"authors\":\"Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP\",\"subject_orig\":\"13. Climate action\",\"oa_state\":0,\"url\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.246040628440847\",\"y\":\"-0.167350749419719\",\"labels\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"subject\":\"0106 biological sciences\",\"title\":\"Humid tropical rain forest has expanded into eucalypt forest and savanna over the last 50 years\",\"year\":\"2011-11-24\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Ecology and Evolution\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1002\\/ece3.70\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/11343\\/264893\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003ETropical rain forest expansion and savanna woody vegetation thickening appear to be a global trend, but there remains uncertainty about whether there is a common set of global drivers. Using geographic information techniques, we analyzed aerial photography of five areas in the humid tropics of northeastern Queensland, Australia, taken in the 1950s and 2008, to determine if changes in rain forest extent match those reported for the Australian monsoon tropics using similar techniques. Mapping of the 1950s aerial photography showed that of the combined study area (64,430 ha), 63% was classified as eucalypt forests\\/woodland and 37% as rain forest. Our mapping revealed that although most boundaries remained stable, there was a net increase of 732 ha of the original rain forest area over the study period, and negligible conversion of rain forest to eucalypt forest\\/woodland. Statistical modeling, controlling for spatial autocorrelation, indicated distance from preexisting rain forest as the strongest determinant of rain forest expansion. Margin extension had a mean rate across the five sites of 0.6 m per decade. Expansion was greater in tall open forest types but also occurred in shorter, more flammable woodland vegetation types. No correlations were detected with other local variables (aspect, elevation, geology, topography, drainage). Using a geographically weighted mean rate of rain forest margin extension across the whole region, we predict that over 25% of tall open forest (a forest type of high conservation significance) would still remain after 2000 years of rain forest expansion. This slow replacement is due to the convoluted nature of the rain forest boundary and the irregular shape of the tall open forest patches. Our analyses point to the increased concentration of atmospheric CO\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003Eas the most likely global driver of indiscriminate rain forest expansion occurring in northeastern Australia, by increasing tree growth and thereby overriding the effects of fire disturbance.\u003C\\/jats:p\u003E\",\"doi\":\"10.1002\\/ece3.70\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"David Y. P. Tng; Gregor J. Sanders; Ellen Weber; Grant J. Williamson; Brett P. Murphy; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Gregor Sanders; Grant J. Williamson; Ellen Weber; David Y. P. Tng; David Y P, Tng; David M J S, Bowman; Brett P, Murphy; Ellen, Weber; Grant J, Williamson; Gregor, Sanders; Jeanette, Kemp; Murphy, Brett P; Williamson, Grant J; Tng, David Y P; Sanders, Gregor; Kemp, Jeanette; Bowman, David M J S; Weber, Ellen\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.226080980470218\",\"y\":\"-0.155664175951863\",\"labels\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"subject\":\"0301 basic medicine\",\"title\":\"Ancestral stomatal control results in a canalization of fern and lycophyte adaptation to drought\",\"year\":\"2013-02-20\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"New Phytologist\",\"link\":\"https:\\/\\/pubmed.ncbi.nlm.nih.gov\\/23421706\\/\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003ESummary\u003C\\/jats:title\u003E\u003Cjats:p\u003E \u003Cjats:list list-type=\\\"bullet\\\"\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003ELittle is known about how a predominantly passive hydraulic stomatal control in ferns and lycophytes might impact water use under stress. Ferns and lycophytes occupy a diverse array of habitats, from deserts to rainforest canopies, raising the question of whether stomatal behaviour is the same under all ecological strategies and imposes ecological or functional constraints on ferns and lycophytes.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EWe examined the stomatal response of a diverse sample of fern and lycophyte species to both soil and atmospheric water stress, assessing the foliar level of the hormone abscisic acid (\u003Cjats:styled-content style=\\\"fixed-case\\\"\u003EABA\u003C\\/jats:styled-content\u003E) over drought and recovery and the critical leaf water potential (\\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E) at which photosynthesis in droughted leaves failed to recover.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EThe stomata of all ferns and lycophytes showed very predictable responses to soil and atmospheric water deficit via \\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E, while stomatal closure was poorly correlated with changes in ABA. We found that all ferns closed stomata at very low levels of water stress and their survival afterwards was limited only by their capacitance and desiccation tolerance.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EFerns and lycophytes have constrained stomatal responses to soil and atmospheric water deficit as a consequence of a predominantly passive stomatal regulation. This results in a monotypic strategy in ferns and lycophytes under water stress.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003C\\/jats:list\u003E \u003C\\/jats:p\u003E\",\"doi\":\"10.1111\\/nph.12190\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.523766748428778\",\"y\":\"0.152693334034553\",\"labels\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"subject\":\"0106 biological sciences\",\"title\":\"Aborigine\\u2010managed forest, savanna and grassland: biome switching in montane eastern Australia\",\"year\":\"2014-04-10\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1111\\/jbi.12306\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/1885\\/74078\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003ETo assess hypotheses about the role of anthropogenic fire in the maintenance and origin of a fine\\u2010scale vegetation mosaic of rain forest, eucalypt savanna and grassland.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EBunya Mountains, subtropical eastern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EA time series of vegetation maps was compiled from historical and recent aerial photography and field surveys. Geospatial models were constructed of environmental domains for rain forest, savanna and grassland, and for areas of biome change. Grassland soils were analysed for carbon isotope ratios (\\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC), and radiocarbon (\u003Cjats:sup\u003E14\u003C\\/jats:sup\u003EC) dates were acquired for bulk samples from a range of depths.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EAnalysis revealed weak associations between topography and the distribution of rain forest, savanna and grassland, and their patterns of recent change. Grassland occupied an environmental domain intermediate between rain forest and savanna and was more than four times as likely to occur within a matrix of rain forest rather than savanna. There was a large proportional reduction in the area of both grassland (\\u221235%) and savanna (\\u221219%) between 1961 and 2006 because of the expansion of rain forest. However, the greater initial extent of savanna meant that the areal loss of savanna was an order of magnitude greater than for grassland (1433 vs. 146\\u00a0ha). There was no evidence of abrupt changes in \\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC in grassland soil profiles, indicating stability of the vegetation over the last 2000\\u00a0years.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThere is no simple gradient in \\u2018tree suitability\\u2019 from rain forest, through savanna, to treeless grassland on the Bunya Mountains. A general absence of fire since the 19th century has greatly reduced the extent of grassy savanna and grassland formations, to the advantage of rain forest. These results support the hypothesis that the vegetation mosaic on the Bunya Mountains is a cultural artefact and testament to millennia of skilful and persistent burning. We could not conclusively reject the hypothesis that the grasslands are Pleistocene relicts that have declined throughout the Holocene; nonetheless, an explanation more consistent with the evidence overall is that the grasslands must have had periods of expansion during the Holocene, probably as a consequence of severe fires that have destroyed patches of rain forest.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12306\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Butler, Don W.; Fensham, Rod; Murphy, Brett P.; Bury, Sarah J.; Bowman, David M. J. S.; Haberle, Simon; Brett P. Murphy; Sarah J. Bury; David M. J. S. Bowman; Simon G. Haberle; Don W. Butler; Roderick J. Fensham\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.214181365281173\",\"y\":\"-0.281557825509733\",\"labels\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"subject\":\"0106 biological sciences\",\"title\":\"Alternative stable states and the role of fire\\u2013vegetation\\u2013soil feedbacks in the temperate wilderness of southwest Tasmania\",\"year\":\"2011-11-06\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-011-9677-0\",\"fulltext\":\"\",\"paper_abstract\":\"Two ecological models have been put forward to explain the dynamics of fire-promoting and fire-sensitive vegetation in southwest Tasmania: the alternative stable states model of Jackson (in Proc Ecol Soc Aust 3:9\\u201316, 1968) and the sharpening switch model of Mount (in Search 10:180\\u2013186, 1979). Assessing the efficacy of these models requires high resolution spatio-temporal data on whether vegetation patterns are stable or dynamic across landscapes. We analysed ortho-rectified sequences of aerial photography and satellite imagery from 1948, 1988 and 2010 to detect decadal scale changes in forest and non-forest vegetation cover in southwest Tasmania. There was negligible change from forest to non-forest (\u003C0.05%) and only a modest change from non-forest to forest over the study period. Forest cover increased by 4.1% between 1948 and 1988, apparently due to the recovery of forest vegetation following stand-replacing fire prior to 1948. Forest cover increased by 0.8% between 1988 and 2010, reflecting the limited ability of forest to invade treeless areas. The two models include interactions between vegetation, fire and soil, which we investigated by analysing the chemical (phosphorus, nitrogen) and physical properties (clay, silt) of 128 soil samples collected across 34 forest\\u2013non-forest boundaries. Phosphorus in the upper horizon was typically lower in non-forest vegetation compared to forest vegetation, which is consistent with proposed fire\\u2013vegetation\\u2013soil feedbacks. Mineral horizons were dominated by sand, with low levels of clay under all vegetation types. Available field evidence lends support to the Jackson (1968) alternative stable states model as the most suitable model of vegetation dynamics on nutrient poor substrates in southwest Tasmania although modifications of the timeframes for transitions toward rainforest are required.\",\"doi\":\"10.1007\\/s10980-011-9677-0\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Samuel W. Wood; David M. J. S. Bowman; Sam W. Wood\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.363903148059666\",\"y\":\"-0.104475505046146\",\"labels\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"subject\":\"0106 biological sciences\",\"title\":\"Has global environmental change caused monsoon rainforests to expand in the Australian monsoon tropics?\",\"year\":\"2010-06-24\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-010-9496-8\",\"fulltext\":\"\",\"paper_abstract\":\"A large research program in the Australian monsoon tropics has concluded that monsoon rainforests have expanded within the savanna matrix, a trend that has been emulated throughout the tropics worldwide. The driver of the northern Australian trend was not resolved, but it was suggested to be linked to a long-term trend towards wetter climates, atmospheric CO2 enrichment, and changed fire regimes. We review these findings with particular consideration of its analytical and evidentiary basis and plausibility of the global change hypothesis. Field validation has largely demonstrated that the aerial photographic technique that underpinned the previous research is reliable enough to detect rainforest expansion. Statistical modelling demonstrated that the expansion is related to sites with regionally low fire activity, although models are of low explanatory power reflecting the sketchy historical records of fire and feral animal impacts. Field studies show that current fire regimes adjacent to expanding rainforest patches are causing populations of the native conifer Callitris intratropica, an obligate seeder, to crash. Therefore, it is unlikely that changes in fire regimes, which have been deleterious to other fire-sensitive taxa and plant communities in the region, are responsible for the rainforest expansion. We conclude that the expansion of monsoon rainforests is most plausibly linked to the current wetting trend or elevated CO2 concentration. Increases in either water availability or CO2 concentration can potentially overwhelm the negative feedback between fire and rainforest cover that is responsible for the meta-stability of monsoon rainforest boundaries. However, further research at the continental scale, using aerial photography, tree rings and other proxies, is required to evaluate this hypothesis.\",\"doi\":\"10.1007\\/s10980-010-9496-8\",\"project_id\":\"LP0346929\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Daniel S. Banfai; Brett P. Murphy; Brett P. Murphy; Daniel S. Banfai; David M. J. S. Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.188262242757116\",\"y\":\"-0.114417703128843\",\"labels\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"subject\":\"0301 basic medicine\",\"title\":\"Australia\\u2014A Model System for the Development of Pyrogeography\",\"year\":\"2011-04-01\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Fire Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.4996\\/fireecology.0701005\",\"fulltext\":\"\",\"paper_abstract\":\"We define pyrogeography as an integrative, multidisciplinary perspective of landscape fire, its ecological effects, and its relationships with human societies. Like biogeography, this program spans geographic scales from the local to the global, has an evolutionary frame, and thus a geological dimension. And, like other geographic disciplines, pyrogeography has a clear commitment to understanding the interrelationships between cultures and their environment. We illustrate our approach by considering the pyrogeography of Australia. We demonstrate how a long history of fire has had a pervasive influence on the continent\\u2019s biota. While Aborigines coexisted with flammable landscapes for millennia, contemporary Australian society is still learning to live in a land of fire.\",\"doi\":\"10.4996\\/fireecology.0701005\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Brett P. Murphy; David M. J. S. Bowman; Brett P. Murphy; David M. J. S. Bowman\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0561772020500714\",\"y\":\"0.441696304061327\",\"labels\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"subject\":\"0106 biological sciences\",\"title\":\"Fire regimes and woody biomass dynamics in Australian savannas\",\"year\":\"2013-08-30\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/10.1111\\/jbi.12204\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003EMany tropical savannas are undergoing a trend of increasing woody biomass, or \\u2018woody thickening\\u2019. Management to reduce fire frequency and intensity in savannas could substantially increase the amount of carbon stored in woody biomass. We addressed two questions: (1) are northern Australian savannas thickening; and (2) to what extent, and by what demographic processes, does fire affect woody biomass accumulation?\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EThree large national parks, covering 24,000\\u00a0km\u003Cjats:sup\u003E2\u003C\\/jats:sup\u003E, in monsoonal northern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EWe examined changes in woody biomass carbon stocks \\u2013 inferred from tree basal area and the density of woody understorey plants \\u2013 over a 10\\u2010year period in 136 savanna monitoring plots. We statistically assessed these changes in relation to fire frequency and severity. We used a meta\\u2010analysis to identify general trends in woody cover in Australian savannas over the last half\\u2010century.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EWoody biomass carbon stocks were relatively stable across the three national parks, but rates of change were statistically indistinguishable from earlier findings of a weak thickening trend. Change was negatively correlated with fire frequency, particularly the frequency of severe fires. High frequencies of severe fires decreased rates of accumulation of biomass by existing trees (through reductions in tree growth and death of individual stems), rather than whole\\u2010tree mortality and suppression of recruitment. However, across northern Australia, our meta\\u2010analysis identified a general, albeit weak, trend of woody thickening.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThe drivers of northern Australia's weak thickening trend are uncertain, but likely candidates include increasing atmospheric \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E concentration and water availability, and pastoral intensification. We demonstrate that changes to fire management have the potential to either increase or decrease rates of woody thickening relative to any underlying trend. Understanding how savanna fires affect woody biomass, and how fire effects are mediated by climate and \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E, are essential research priorities to predict the fate of savannas.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12204\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Caroline E. R. Lehmann; Caroline E. R. Lehmann; Brett P. Murphy; Brett P. Murphy; Caroline E. R. Lehmann; Jeremy Russell\\u2010Smith; Michael J. Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.250484439327965\",\"y\":\"-0.37778601916065\",\"labels\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"area_uri\":3,\"area\":\"0106 biological sciences\"},{\"id\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"subject\":\"0106 biological sciences\",\"title\":\"Population collapse of a Gondwanan conifer follows the loss of Indigenous fire regimes in a northern Australian savanna\",\"year\":\"2022-05-31\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Scientific Reports\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1038\\/s41598-022-12946-3\",\"fulltext\":\"http:\\/\\/purl.org\\/au-research\\/grants\\/arc\\/DP150101777\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003EColonialism has disrupted Indigenous socioecological systems around the globe, including those supported by intentional landscape burning. Because most disruptions happened centuries ago, our understanding of Indigenous fire management is largely inferential and open to debate. Here, we investigate the ecological consequences of the loss of traditional Aboriginal fire management on fire-exposed savannas on the Arnhem Plateau, northern Australia, using the fire-sensitive conifer \u003Cjats:italic\u003ECallitris intratropica\u003C\\/jats:italic\u003E as a bio-indicator. We contrast Kakadu National Park, where traditional Aboriginal fire management was severely disrupted during the early twentieth century following Aboriginal relocation to surrounding settlements, and an adjacent Aboriginal estate where traditional Aboriginal fire management endures. Since 2006, traditional Aboriginal fire management at this site has been overlaid by a program of broad-scale institutionalized burning in the early dry season, designed to reduce greenhouse emissions. Using remote sensing, field survey, and dendrochronology, we show that on the Aboriginal estate, \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E populations depend on the creation of a shifting patch mosaic of long unburned areas necessary for the recruitment of \u003Cjats:italic\u003EC. intratropica.\u003C\\/jats:italic\u003E However, the imposition of broad-scale fire management is disrupting this population patch dynamic. In Kakadu, there have been extreme declines of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E associated with widespread fires since the mid twentieth century and consequent proliferation of grass fuels. Fire management in Kakadu since 2007, designed to increase the size and abundance of patches of unburned vegetation, has not been able to reverse the population collapse of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E. Our study demonstrates that colonial processes including relocation of Indigenous people and institutional fire management can have deleterious consequences that are nearly irreversible because of hysteresis in \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E population dynamics.\u003C\\/jats:p\u003E\",\"doi\":\"10.1038\\/s41598-022-12946-3\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Bowman, DMJS; Williamson, GJ; Johnston, FH; Bowman, CJW; Murphy, BP; Roos, CI; Trauernicht, C; Rostron, J; Prior, LD; Bowman, DMJS; Prior, LD; Haverkamp, C; Rann, KD; Donald C. Franklin; Sean M. Bellairs; Pascale Taplin; Michael J. Lawes; Brook, B.; Prior, L.; Bowman, D.; Walsh, Angie; Bowman, David M. J. S.; Whitehead, Peter J.; Price, Owen; Rosanne D'Arrigo; Jonathan G. Palmer; Patrick J. Baker; Brittany Dahl; Declan Norrie; Kathryn Allen; Lynda D. Prior; David J. M. S. Bowman; Scott Nichols; Jonathan G. Palmer; Matthew Brookhouse; Ben J. French; David M. J. S. Bowman; David M. J. S. Bowman; Owen Price; Nichols, SC; MacDermott, HJ; Bowman, DMJS; Murphy, BP; Russell-Smith, Jeremy; Yibarbuk, D.; Cooke, P; Bowman, David M. J. S.; Jackson, DM; Whitehead, Peter J.; Fisher, Alaric; Godjuwa, C; Choquenot, D; David M. J. S. Bowman; Stuart Pearson; Kathryn Allen; Quan Hua; Brett P. Murphy; David M. J. S. Bowman; Talia E. Portner; Clay Trauernicht; Wanner, J\\u00fcrgen; Buchbauer, Gerhard; Jirovetz, Leopold; Schmidt, Erich; Bowman, David M. J. S.; Murphy, Brett P.; Roos, Christopher I.; Rostron, Joshua; Williamson, Grant J.; Johnston, Fay H.; Bowman, Clarence J. W.; Trauernicht, Clay; Prior, Lynda D.; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; David M J S, Bowman; Christopher I, Roos; Fay H, Johnston; Brett P, Murphy; Joshua, Rostron; Lynda D, Prior; Grant J, Williamson; Clay, Trauernicht; Clarence J W, Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0231958227792847\",\"y\":\"0.278514210389028\",\"labels\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"subject\":\"0301 basic medicine\",\"title\":\"Unique Responsiveness of Angiosperm Stomata to Elevated CO2 Explained by Calcium Signalling\",\"year\":\"2013-11-20\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0082057\",\"fulltext\":\"\",\"paper_abstract\":\"Angiosperm and conifer tree species respond differently when exposed to elevated CO2, with angiosperms found to dynamically reduce water loss while conifers appear insensitive. Such distinct responses are likely to affect competition between these tree groups as atmospheric CO2 concentration rises. Seeking the mechanism behind this globally important phenomenon we targeted the Ca(2+)-dependent signalling pathway, a mediator of stomatal closure in response to elevated CO2, as a possible explanation for the differentiation of stomatal behaviours. Sampling across the diversity of vascular plants including lycophytes, ferns, gymnosperms and angiosperms we show that only angiosperms possess the stomatal behaviour and prerequisite genetic coding, linked to Ca(2+)-dependent stomatal signalling. We conclude that the evolution of Ca(2+)-dependent stomatal signalling gives angiosperms adaptive benefits in terms of highly efficient water use, but that stomatal sensitivity to high CO2 may penalise angiosperm productivity relative to other plant groups in the current era of soaring atmospheric CO2.\",\"doi\":\"10.1371\\/journal.pone.0082057\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb; Brodribb, Timothy J.; McAdam, Scott A. M.; Timothy J Brodribb; Scott A M McAdam\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.543985837479226\",\"y\":\"0.0858289826142518\",\"labels\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"subject\":\"0106 biological sciences\",\"title\":\"Are the eucalypt and non-eucalypt components of Australian tropical savannas independent?\",\"year\":\"2010-11-10\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Oecologia\",\"link\":\"https:\\/\\/espace.cdu.edu.au\\/view\\/cdu:37682\",\"fulltext\":\"\",\"paper_abstract\":\"Eucalypts (Eucalyptus and Corymbia spp.) dominate (60%) the tree biomass of Australia's tropical savannas but account for only a fraction (28%) of the tree diversity. Because of their considerable biomass and adaptation to environmental stressors, such as fire, the eucalypts may drive tree dynamics in these savannas, possibly to the exclusion of non-eucalypts. We evaluated whether the eucalypt and non-eucalypt components in tropical savannas are dependent so that changes in one component are matched by opposite trends in the other. Using tree inventory data from 127 savanna sites across the rainfall and fire frequency gradients, we found that eucalypt and non-eucalypt basal area and species richness had a negative relationship. This relationship was maintained across the rainfall gradient, with rainfall having a positive effect on the basal area and species richness of both components, but with a greater effect in non-eucalypts. Fire frequency negatively affected basal area, but not species richness, although basal area and species richness of eucalypts and non-eucalypts did not differ in their response to fire. Rainfall appears to set the upper bounds to woody biomass in these mesic savannas, while fire maintains woody biomass below carrying capacity and facilitates coexistence of the components. The magnitude of the component responses, particularly for non-eucalypts, is determined by rainfall, but their dependence is likely due to their differential response to both rainfall and fire, but not to competition for resources. Thus, while eucalypts dominate biomass overall, at high rainfall sites non-eucalypt basal area and diversity are highest, especially where fire frequency is low.\",\"doi\":\"10.1007\\/s00442-010-1829-4\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Jeremy J. Midgley; Brett P. Murphy; J. Russell-Smith; M. J. Lawes; B. P. Murphy; J. J. Midgley; B P, Murphy; J, Russell-Smith; J J, Midgley; M J, Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.157225822455321\",\"y\":\"-0.438046176985289\",\"labels\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"area_uri\":3,\"area\":\"0106 biological sciences\"}]"} - - +{"author":null,"documents":"[{\"id\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"subject\":\"13. Climate action\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"European Geosciences Union\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"fulltext\":\"https:\\/\\/eprints.whiterose.ac.uk\\/100260\\/1\\/BakerClimateseasonalitylimitsleafcarbonassimilation.pdf\",\"paper_abstract\":\"The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009\u003C\\u20092000\\u202fmm\\u202fyr\\u22121.\",\"doi\":\"\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Wagner, FH; H\\u00e9rault, B; Bonal, D; Stahl, C; Anderson, LO; Baker, TR; Sebastian Becker, G; Beeckman, H; Boanerges Souza, D; Cesar Botosso, P; Bowman, DMJS; Br\\u00e4uning, A; Brede, B; Irving Brown, F; Julio Camarero, J; Camargo, PB; Cardoso, FCG; Carvalho, FA; Castro, W; Koloski Chagas, R; Chave, J; Chidumayo, EN; Clark, DA; Regina Capellotto Costa, F; Couralet, C; Henrique Da Silva Mauricio, P; Dalitz, H; Resende De Castro, V; Milani, JEDF; Consuelo De Oliveira, E; De Souza Arruda, L; Devineau, JL; Drew, DM; D\\u00fcnisch, O; Durigan, G; Elifuraha, E; Fedele, M; Ferreira Fedele, L; Figueiredo Filho, A; Finger, CAG; C\\u00e9sar Franco, A; Jnior, LF; Galv\\u00e3o, F; Gebrekirstos, A; Gliniars, R; Maur\\u00edcio Lima De Alencastro Gra\\u00e7a, P; Griffiths, AD; Grogan, J; Guan, K; Homeier, J; Raquel Kanieski, M; Khoon Kho, L; Koenig, J; Valerio Kohler, S; Krepkowski, J; Lemos-Filho, JP; Lieberman, D; Eugene Lieberman, M; Sergio Lisi, C; Longhi Santos, T; Ayala, JLL; Eijji Maeda, E; Malhi, Y; Maria, VRB; Marques, MCM; Marques, R; Maza Chamba, H; Mbwambo, L; Liana Lisboa Melga\\u00e7o, K; Angela Mendivelso, H; Murphy, BP; O'Brien, JJ; F Oberbauer, S; Okada, N; Plissier, R; Prior, LD; Alejandro Roig, F; Ross, M; Rodrigo Rossatto, D; Rossi, V; Rowland, L; Rutishauser, E; Santana, H; Schulze, M; Selhorst, D; Rodrigues Silva, W; Silveira, M; Spannl, S; Swaine, MD; Toledo, JJ; Miranda Toledo, M; Toledo, M; Toma, T\",\"subject_orig\":\"13. Climate action\",\"oa_state\":1,\"url\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.395896433436244\",\"y\":\"0.169597229793406\",\"labels\":\"core_ac_uk__::9926a89a2a46d8529f5dcec6b6eb218c\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"subject\":\"0106 biological sciences\",\"title\":\"Plant Traits Demonstrate That Temperate and Tropical Giant Eucalypt Forests Are Ecologically Convergent with Rainforest Not Savanna\",\"year\":\"2013-12-17\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0084378\",\"fulltext\":\"\",\"paper_abstract\":\"Ecological theory differentiates rainforest and open vegetation in many regions as functionally divergent alternative stable states with transitional (ecotonal) vegetation between the two forming transient unstable states. This transitional vegetation is of considerable significance, not only as a test case for theories of vegetation dynamics, but also because this type of vegetation is of major economic importance, and is home to a suite of species of conservation significance, including the world's tallest flowering plants. We therefore created predictions of patterns in plant functional traits that would test the alternative stable states model of these systems. We measured functional traits of 128 trees and shrubs across tropical and temperate rainforest - open vegetation transitions in Australia, with giant eucalypt forests situated between these vegetation types. We analysed a set of functional traits: leaf carbon isotopes, leaf area, leaf mass per area, leaf slenderness, wood density, maximum height and bark thickness, using univariate and multivariate methods. For most traits, giant eucalypt forest was similar to rainforest, while rainforest, particularly tropical rainforest, was significantly different from the open vegetation. In multivariate analyses, tropical and temperate rainforest diverged functionally, and both segregated from open vegetation. Furthermore, the giant eucalypt forests overlapped in function with their respective rainforests. The two types of giant eucalypt forests also exhibited greater overall functional similarity to each other than to any of the open vegetation types. We conclude that tropical and temperate giant eucalypt forests are ecologically and functionally convergent. The lack of clear functional differentiation from rainforest suggests that giant eucalypt forests are unstable states within the basin of attraction of rainforest. Our results have important implications for giant eucalypt forest management.\",\"doi\":\"10.1371\\/journal.pone.0084378\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Greg J. Jordan; David Y. P. Tng; David M. J. S. Bowman; David M J S Bowman; David Y P Tng; Greg J Jordan; Tng, David Y. P.; Jordan, Greg J.; Bowman, David M. J. S.; David M. J. S. Bowman; David Y. P. Tng; Greg J. Jordan; David Y P, Tng; David M J S, Bowman; Greg J, Jordan\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.197639118307433\",\"y\":\"-0.0758870989288165\",\"labels\":\"doi_dedup___::18be3b76950d65d7355fd20c838eb726\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"subject\":\"cycle du carbone\",\"title\":\"Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests\",\"year\":\"2016-04-28\",\"publisher\":\"Copernicus GmbH\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Biogeosciences\",\"link\":\"https:\\/\\/hdl.handle.net\\/10067\\/1447620151162165141\",\"fulltext\":\"https:\\/\\/hal.univ-lorraine.fr\\/hal-01557759\\/document\",\"paper_abstract\":\"\u003Cjats:p\u003EAbstract. The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall \\u2009<\\u20092000\\u202fmm\\u202fyr\\u22121.\u003C\\/jats:p\u003E\",\"doi\":\"10.5194\\/bg-13-2537-2016\",\"project_id\":\"LP0219425\",\"accessright\":\"Open Access\",\"authors\":\"Hans Beeckman; Vivien Rossi; Fabr\\u00edcio Alvim Carvalho; Simone Aparecida Vieira; Helmut Dalitz; Franziska Volland; Davi Rodrigo Rossatto; J\\u00e9r\\u00f4me Chave; Rapha\\u00ebl P\\u00e9lissier; Marcio Fedele; Hector Maza Maza Chamba; Kaiyu Guan; Kaiyu Guan; Marisol Toledo; Steven F. Oberbauer; Jos\\u00e9 Julio de Toledo; Cl\\u00e9ment Stahl; Cl\\u00e9ment Stahl; Renato Francisco Rodrigues Marques; Michael D. Swaine; J. Julio Camarero; Karina Melga\\u00e7o; Michael S. Ross; Lucy Rowland; Ervan Rutishauser; Fl\\u00e1via R. C. Costa; Fabien Wagner; Franklin Galv\\u00e3o; Oliver D\\u00fcnisch; Foster Brown; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Marcio Lea Bolzan Zanon; Jean-Louis Devineau; Lynda D. Prior; Pl\\u00ednio Barbosa de Camargo; Joseph J. O'Brien; Lawrence Mbwambo; Carolina V. Castilho; Juan Ignacio Valdez Hern\\u00e1ndez; Marcos Miranda Toledo; Mario Tomazello Filho; Hooz Angela Mendivelso; Achim Br\\u00e4uning; Deborah A. Clark; Jos\\u00e9 Luis L\\u00f3pez Ayala; Marcos Silveira; Jennifer Koenig; Gr\\u00e9groire Vincent; Danilo Boanerges Souza; Claudio Sergio Lisi; Claudio Sergio Lisi; James Grogan; Edilson Consuelo de Oliveira; Wendeson Castro; Jan Verbesselt; Williamar Rodrigues Silva; Brett P. Murphy; Eduardo Eijji Maeda; Luciano de Souza Arruda; Fernanda C. G. Cardoso; M\\u00e1rcia C. M. Marques; Martin Worbes; Sintia Valerio Kohler; Bruno H\\u00e9rault; E. N. Chidumayo; Elisha Elifuraha; Maria Raquel Kanieski; Fidel A. Roig; Robert Gliniars; Giselda Durigan; David M. Drew; Ligia Ferreira Fedele; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Lip Khoon Kho; J\\u00fcrgen Homeier; Mark Schulze; Vivian R. B. Maria; Julia Krepkowski; Timothy R. Baker; Vinicius Resende de Castro; Damien Bonal; Milton Eugene Lieberman; Paulo Cesar Botosso; David M. J. S. Bowman; Camille Couralet; Hellen Paredio Santana; Diana Lieberman; Rubens Koloski Chagas; Jos\\u00e9 P. Lemos-Filho; Jo\\u00e3o Lima Freitas J\\u00fanior; Anthony D. Griffiths; Naoki Okada; Aster Gebrekirstos; Luiz E. O. C. Arag\\u00e3o; Luiz E. O. C. Arag\\u00e3o; Gabriel Sebastian Becker; Yadvinder Malhi; Susanne Spannl; Tomaz Longhi Santos; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Mark Schulze; Timothy R. Baker; Jesus Julio Camarero; Oliver D\\u00fcnisch; Simone Aparecida Vieira; Marcos Miranda Toledo; Kaiyu Guan; Jos\\u00e9 Luis L\\u00f3pez Ayala; Michael D. Swaine; Anthony D. Griffiths; Jos\\u00e9 Pires Lemos-Filho; Deborah A. Clark; Vinicius Resende de Castro; Jos\\u00e9 Julio Toledo; Hooz Angela Mendivelso; Lynda D. Prior; Michael Ross; Diana Lieberman; Claudio Sergio Lisi; Carolina Volkmer de Castilho; Emmanuel N. Chidumayo; Rubens Koloski Chagas; Naoki Okada; Paulo Henrique da Silva Mauricio; Takeshi Toma; Karina Liana Lisboa Melga\\u00e7o; C\\u00e9sar Augusto Guimar\\u00e3es Finger; Maria Raquel Kanieski; Damien Bonal; Camille Couralet; Fidel Alejandro Roig; Renato Marques; Magda Lea Bolzan Zanon; Fabien H. Wagner; Aster Gebrekirstos; Yadvinder Malhi; Lucy Rowland; Gr\\u00e9goire Vincent; Danilo Boanerges Souza; Julia Krepkowski; Hector Maza Chamba; Vivian R. B. Maria; Juan Ignacio Valdez Hern\\u00e1ndez; Milton Eugene Lieberman; Foster Irving Brown; Augusto C\\u00e9sar Franco; Steven F. Oberbauer; J\\u00e9rome Chave; Hellen Santana; Marisol Toledo; Robert Gliniars; Davi Rodrigo Rossatto; Afonso Figueiredo Filho; Tomaz Longhi Santos; Marcia C. M. Marques; Paulo Maur\\u00edcio Lima de Alencastro Gra\\u00e7a; Helmut Dalitz; Giselda Durigan; Achim Br\\u00e4uning; Eduardo Eijji Maeda; Hans Beeckman; Williamar Rodrigues Silva; Pl\\u00ednio Barbosa Camargo; Jo\\u00e3o Lima Freitas J\\u00fanior; Rapha\\u00ebl P\\u00e9lissier; Wendeson Castro; Cl\\u00e9ment Stahl; Jennifer Koenig; Joseph J. O'Brien; Benjamin Brede; David M. J. S. Bowman; Luiz E. O. C. Arag\\u00e3o; Jean-Louis Devineau; Marcio Fedele; Fabr\\u00edcio Alvim Carvalho; Paulo Cesar Botosso; Mario Tomazello Filho; Fernanda C. G. Cardoso; Diogo Selhorst; Flavia Regina Capellotto Costa; Ervan Rutishauser; Sintia Valerio Kohler; Lawrence Mbwambo; J\\u00fcrgen Homeier; Liana O. Anderson; Ja\\u00e7anan Eloisa de Freitas Milani; Marcos Silveira; Brett P. Murphy; Edilson Consuelo de Oliveira; Franziska Volland; Franklin Galv\\u00e3o; Luciano de Souza Arruda; Martin Worbes; David M. Drew; Jan Verbesselt; Susanne Spannl; Ligia Ferreira Fedele; Lip Khoon Kho; Elisha Elifuraha; Gabriel Sebastian Becker; Vivien Rossi; Bruno H\\u00e9rault; James Grogan; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Chave, J\\u00e9rome; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Silva, Williamar Rodrigues; Kanieski, Maria Raquel; Malhi, Yadvinder; Chidumayo, Emmanuel N.; Finger, C\\u00e9sar Augusto Guimar\\u00e3es; Mendivelso, Hooz Angela; Botosso, Paulo Cesar; Lieberman, Milton Eugene; Griffiths, Anthony D.; Devineau, Jean-Louis; Silveira, Marcos; Couralet, Camille; Costa, Flavia Regina Capellotto; Chagas, Rubens Koloski; Vieira, Simone Aparecida; Bonal, Damien; Franco, Augusto C\\u00e9sar; Roig, Fidel Alejandro; Swaine, Michael D.; Becker, Gabriel Sebastian; Verbesselt, Jan; Br\\u00e4uning, Achim; Krepkowski, Julia; Silva, Paulo Henrique; Prior, Lynda D.; Guan, Kaiyu; Galv\\u00e3o, Franklin; Clark, Deborah A.; Marques, Renato; H\\u00e9rault, Bruno; Durigan, Giselda; Gra\\u00e7a, Paulo Maur\\u00edcio Lima de Alencastro; Rossatto, Davi Rodrigo; de Souza Arruda, Luciano; Ferreira Fedele, Ligia; Lemos-Filho, Jos\\u00e9 Pires; Carvalho, Fabr\\u00edcio Alvim; Valdez Hern\\u00e1ndez, Juan Ignacio; Figueiredo Filho, Afonso; Okada, Naoki; Rowland, Lucy; Schulze, Mark; Camarero, Jesus Julio; Volkmer de Castilho, Carolina; Toledo, Marcos Miranda; Anderson, Liana O.; D\\u00fcnisch, Oliver; Rossi, Vivien; Toma, Takeshi; Worbes, Martin; Freitas J\\u00fanior, Jo\\u00e3o Lima; Kohler, Sintia Valerio; Elifuraha, Elisha; Camargo, Pl\\u00ednio Barbosa; Gebrekirstos, Aster; Grogan, James; Selhorst, Diogo; Arag\\u00e3o, Luiz E. O. C.; Vincent, Gr\\u00e9goire; Chave, J\\u00e9r\\u00f4me; L\\u00f3pez Ayala, Jos\\u00e9 Luis; Santana, Hellen; Maza Chamba, Hector; Boanerges Souza, Danilo; Cardoso, Fernanda C. G.; Volland, Franziska; de Castro, Vinicius Resende; Lisi, Claudio Sergio; Gliniars, Robert; Lieberman, Diana; Oberbauer, Steven F.; Dalitz, Helmut; Zanon, Magda Lea Bolzan; Santo, Tomaz, Longhi; Spannl, Susanne; Tomazello Filho, Mario; Bowman, David M.; Toledo, Marisol; Maeda, Eduardo Eijji; de Oliveira, Edilson Consuelo; Murphy, Brett P.; Mbwambo, Lawrence; Wagner, Fabien H.; Brede, Benjamin; Marques, Marcia C. M.; Castro, Wendeson; Ross, Michael; Rutishauser, Ervan; O'Brien, Joseph J.; Beeckman, Hans; Baker, Timothy R.; de Freitas Milani, Ja\\u00e7anan Eloisa; Kho, Lip Khoon; Koenig, Jennifer; Melga\\u00e7o, Karina Liana Lisboa; P\\u00e9lissier, Rapha\\u00ebl; Fedele, Marcio; Homeier, J\\u00fcrgen; Maria, Vivian R. B.; Drew, David M.; Stahl, Cl\\u00e9ment; Brown, Foster Irving; Toledo, Jos\\u00e9 Julio; Beeckman, Hans; Baker, Timothy R.; Bonal, Damien; Wagner, Fabien H.; H\\u00e9rault, Bruno; Becker, Gabriel Sebastian; Botosso, Paulo Cesar; Arag\\u00e3o, Luiz E. O. C.; Anderson, Liana O.; Stahl, Cl\\u00e9ment; Boanerges Souza, Danilo\",\"subject_orig\":\"cycle du carbone\",\"oa_state\":1,\"url\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"cluster_labels\":\"Cycle du carbone, 13. climate action\",\"x\":\"0.367382118335057\",\"y\":\"0.397753425114482\",\"labels\":\"doi_dedup___::1ffd696adb19408e4a921e2dfe0030a9\",\"area_uri\":5,\"area\":\"Cycle du carbone, 13. climate action\"},{\"id\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"subject\":\"0106 biological sciences\",\"title\":\"Conservative water management in the widespread conifer genus Callitris\",\"year\":\"2013-11-13\",\"publisher\":\"Oxford University Press (OUP)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"AoB PLANTS\",\"link\":\"https:\\/\\/doi.org\\/10.1093\\/aobpla\\/plt052\",\"fulltext\":\"\",\"paper_abstract\":\"Water management by woody species encompasses characters involved in seeking, transporting and evaporating water. Examples of adaptation of individual characters to water availability are common, but little is known about the adaptability of whole-plant water management. Here we use plant hydration and growth to examine variation in whole-plant water management characteristics within the conifer genus Callitris. Using four species that cover the environmental extremes in the Australian continent, we compare seasonal patterns of growth and hydration over 2 years to determine the extent to which species exhibit adaptive variation to the local environment. Detailed measurements of gas exchange in one species are used to produce a hydraulic model to predict changes in leaf water potential throughout the year. This same model, when applied to the remaining three species, provided a close representation of the measured patterns of water potential gradient at all sites, suggesting strong conservation in water management, a conclusion supported by carbon and oxygen isotope measurements in Callitris from across the continent. We conclude that despite its large range in terms of rainfall, Callitris has a conservative water management strategy, characterized by a high sensitivity of growth to rainfall and a delayed (anisohydric) closure of stomata during soil drying.\",\"doi\":\"10.1093\\/aobpla\\/plt052\",\"project_id\":\"FT100100237\",\"accessright\":\"Open Access\",\"authors\":\"Scott Nichols; David M. J. S. Bowman; Lynda D. Prior; Timothy J. Brodribb; Brett P. Murphy; Brett P. Murphy; Pauline F. Grierson; S. Nichols; T. J. Brodribb; P. F. Grierson; D. M. J. S. Bowman; B. P. Murphy; L. D. Prior; Brodribb, Timothy J.; Nichols, Scott; Bowman, David M. J. S.; Murphy, Brett P.; Grierson, Pauline F.; Prior, Lynda D.\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.268025677052877\",\"y\":\"0.18910176812401\",\"labels\":\"doi_dedup___::23e74581e17c81c80e101542938c9c0c\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"subject\":\"13. Climate action\",\"title\":\"Are giant eucalypt forests rain forest?\",\"year\":\"2023-01-01\",\"publisher\":\"University Of Tasmania\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"\",\"link\":\"https:\\/\\/doi.org\\/10.25959\\/23243075\",\"fulltext\":\"\",\"paper_abstract\":\"Forests dominated by giant eucalypts ( eucalypt species with the potential to attain heights exceeding 70m) occur along the Australian east coast in association with rain forest. These forests contribute significantly to the global carbon budget but their ecological classification suffers from ambiguities around the definition of rain forest. The belief that eucalypts are 'sclerophyllous' and therefore not rain forest is a subjective view that has led to problems with conservation policies and management strategies of giant eucalypt forests. Understanding these forests from a global and functional viewpoint is paramount for their effective management. Eucalyptus grandis-dominated giant eucalypt forests in the Wet Tropics of Australia serve as a case study. Observing that rain forest species continuously regenerate in the understories of these eucalypt forests and believing that rain forest incursion will lead to the local elimination of the giant eucalypts, land managers prescribe frequent, low intensity fires. This management strategy is contentious and not underpinned by robust ecological understanding. To resolve these classificatory problems around eucalypts occurring in rain forest, I take a multidisciplinary approach to address the specific question: Are giant eucalypt forests rain forests? To obtain an in depth understanding of the ecology of giant eucalypts and the forests they dominate, and to provide a global context for these systems, I synthesise over a century's worth of literature on these systems (Chapter 2). Based on these data I propose that giant eucalypts are ecologically akin to rain forest emergent pioneers with a unique dependence on fire for regeneration, and that their habitat should be considered a type of secondary rain forest. Using a GIS-based approach I investigate the landscape scale vegetation dynamics of rain forest and E. grandis forest in the Wet Tropics, where E. grandis forests are considered to be threatened (Chapter 3). Using a environmentally stratified sample of sites, I show that rain forest has expanded over the past 50 years, and that this expansion is most likely a response to a global driver such as increased atmospheric CO2 rather than with local environmental factors. Projective modelling of this rain forest expansion predicts that, even at the fastest estimated rate known for the region, it will be more than 2000 years before rain forest fully engulfs giant eucalypt forests. In Chapter 4, I present a seedling growth experiment to examine if the regeneration niche of E. grandis exhibits ecological convergence with that of well-studied temperate giant eucalypts. I show that E. grandis seedlings grow poorly in unburnt rain forest soils because of the unavailability of phosphorus. The addition of phosphorus lifts phosphorus-deficiency symptoms in seedlings in rain forest soils, and accords well with the idea of E. grandis being a rain forest pioneer with the unique requirement of fire as a disturbance mechanism to create suitable open habitats for regeneration. To contextualize the rain forest- giant eucalypt forest - savanna transitions in Australia from a functional and macroecological perspective, I present a plant functional trait analysis of representative plants across these vegetation transitions in both tropical and temperate Australia (Chapter 5). I show that both tropical and temperate giant eucalypt forest are functionally convergent with rain forest and not with savanna. These results suggest that a classification of giant eucalypt forest based on functional attributes of the whole forest will be more useful for management policy than the established classification based on canopy dominants. In conclusion (Chapter 6), the synthesis ofmy landscape ecology and functional biology data supports my overarching hypothesis that giant eucalypt forests are functionally and ecologically rain forests and should be managed as such. I discuss the implications of my research for the management of Wet Tropics giant eucalypt forest and recommend that E. grandis forest should be managed under a regime of total fire suppression. Given that rare natural fires can be expected to occur under this management, the resulting regime will mimic the inherently long fire return times of these systems.\",\"doi\":\"10.25959\\/23247668.v1\",\"project_id\":\"DP0878177\",\"accessright\":\"not available\",\"authors\":\"Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP; Tng, DYP\",\"subject_orig\":\"13. Climate action\",\"oa_state\":0,\"url\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.246040628440847\",\"y\":\"-0.167350749419719\",\"labels\":\"doi_dedup___::316e72c784f2d223eca5f1d386a46857\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"subject\":\"0106 biological sciences\",\"title\":\"Humid tropical rain forest has expanded into eucalypt forest and savanna over the last 50 years\",\"year\":\"2011-11-24\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Ecology and Evolution\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1002\\/ece3.70\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/11343\\/264893\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003ETropical rain forest expansion and savanna woody vegetation thickening appear to be a global trend, but there remains uncertainty about whether there is a common set of global drivers. Using geographic information techniques, we analyzed aerial photography of five areas in the humid tropics of northeastern Queensland, Australia, taken in the 1950s and 2008, to determine if changes in rain forest extent match those reported for the Australian monsoon tropics using similar techniques. Mapping of the 1950s aerial photography showed that of the combined study area (64,430 ha), 63% was classified as eucalypt forests\\/woodland and 37% as rain forest. Our mapping revealed that although most boundaries remained stable, there was a net increase of 732 ha of the original rain forest area over the study period, and negligible conversion of rain forest to eucalypt forest\\/woodland. Statistical modeling, controlling for spatial autocorrelation, indicated distance from preexisting rain forest as the strongest determinant of rain forest expansion. Margin extension had a mean rate across the five sites of 0.6 m per decade. Expansion was greater in tall open forest types but also occurred in shorter, more flammable woodland vegetation types. No correlations were detected with other local variables (aspect, elevation, geology, topography, drainage). Using a geographically weighted mean rate of rain forest margin extension across the whole region, we predict that over 25% of tall open forest (a forest type of high conservation significance) would still remain after 2000 years of rain forest expansion. This slow replacement is due to the convoluted nature of the rain forest boundary and the irregular shape of the tall open forest patches. Our analyses point to the increased concentration of atmospheric CO\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003Eas the most likely global driver of indiscriminate rain forest expansion occurring in northeastern Australia, by increasing tree growth and thereby overriding the effects of fire disturbance.\u003C\\/jats:p\u003E\",\"doi\":\"10.1002\\/ece3.70\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"David Y. P. Tng; Gregor J. Sanders; Ellen Weber; Grant J. Williamson; Brett P. Murphy; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Brett P. Murphy; Jeanette Kemp; David M. J. S. Bowman; Gregor Sanders; Grant J. Williamson; Ellen Weber; David Y. P. Tng; David Y P, Tng; David M J S, Bowman; Brett P, Murphy; Ellen, Weber; Grant J, Williamson; Gregor, Sanders; Jeanette, Kemp; Murphy, Brett P; Williamson, Grant J; Tng, David Y P; Sanders, Gregor; Kemp, Jeanette; Bowman, David M J S; Weber, Ellen\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.226080980470218\",\"y\":\"-0.155664175951863\",\"labels\":\"doi_dedup___::42b25a1ae2c99b1997dde4113007d838\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"subject\":\"0301 basic medicine\",\"title\":\"Ancestral stomatal control results in a canalization of fern and lycophyte adaptation to drought\",\"year\":\"2013-02-20\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"New Phytologist\",\"link\":\"https:\\/\\/pubmed.ncbi.nlm.nih.gov\\/23421706\\/\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003ESummary\u003C\\/jats:title\u003E\u003Cjats:p\u003E \u003Cjats:list list-type=\\\"bullet\\\"\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003ELittle is known about how a predominantly passive hydraulic stomatal control in ferns and lycophytes might impact water use under stress. Ferns and lycophytes occupy a diverse array of habitats, from deserts to rainforest canopies, raising the question of whether stomatal behaviour is the same under all ecological strategies and imposes ecological or functional constraints on ferns and lycophytes.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EWe examined the stomatal response of a diverse sample of fern and lycophyte species to both soil and atmospheric water stress, assessing the foliar level of the hormone abscisic acid (\u003Cjats:styled-content style=\\\"fixed-case\\\"\u003EABA\u003C\\/jats:styled-content\u003E) over drought and recovery and the critical leaf water potential (\\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E) at which photosynthesis in droughted leaves failed to recover.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EThe stomata of all ferns and lycophytes showed very predictable responses to soil and atmospheric water deficit via \\u03a8\u003Cjats:sub\u003El\u003C\\/jats:sub\u003E, while stomatal closure was poorly correlated with changes in ABA. We found that all ferns closed stomata at very low levels of water stress and their survival afterwards was limited only by their capacitance and desiccation tolerance.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003Cjats:list-item\u003E\u003Cjats:p\u003EFerns and lycophytes have constrained stomatal responses to soil and atmospheric water deficit as a consequence of a predominantly passive stomatal regulation. This results in a monotypic strategy in ferns and lycophytes under water stress.\u003C\\/jats:p\u003E\u003C\\/jats:list-item\u003E \u003C\\/jats:list\u003E \u003C\\/jats:p\u003E\",\"doi\":\"10.1111\\/nph.12190\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.523766748428778\",\"y\":\"0.152693334034553\",\"labels\":\"doi_dedup___::5348a1734f9efe1cdab94687328e7022\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"subject\":\"0106 biological sciences\",\"title\":\"Aborigine\\u2010managed forest, savanna and grassland: biome switching in montane eastern Australia\",\"year\":\"2014-04-10\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1111\\/jbi.12306\",\"fulltext\":\"http:\\/\\/hdl.handle.net\\/1885\\/74078\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003ETo assess hypotheses about the role of anthropogenic fire in the maintenance and origin of a fine\\u2010scale vegetation mosaic of rain forest, eucalypt savanna and grassland.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EBunya Mountains, subtropical eastern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EA time series of vegetation maps was compiled from historical and recent aerial photography and field surveys. Geospatial models were constructed of environmental domains for rain forest, savanna and grassland, and for areas of biome change. Grassland soils were analysed for carbon isotope ratios (\\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC), and radiocarbon (\u003Cjats:sup\u003E14\u003C\\/jats:sup\u003EC) dates were acquired for bulk samples from a range of depths.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EAnalysis revealed weak associations between topography and the distribution of rain forest, savanna and grassland, and their patterns of recent change. Grassland occupied an environmental domain intermediate between rain forest and savanna and was more than four times as likely to occur within a matrix of rain forest rather than savanna. There was a large proportional reduction in the area of both grassland (\\u221235%) and savanna (\\u221219%) between 1961 and 2006 because of the expansion of rain forest. However, the greater initial extent of savanna meant that the areal loss of savanna was an order of magnitude greater than for grassland (1433 vs. 146\\u00a0ha). There was no evidence of abrupt changes in \\u03b4\u003Cjats:sup\u003E13\u003C\\/jats:sup\u003EC in grassland soil profiles, indicating stability of the vegetation over the last 2000\\u00a0years.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThere is no simple gradient in \\u2018tree suitability\\u2019 from rain forest, through savanna, to treeless grassland on the Bunya Mountains. A general absence of fire since the 19th century has greatly reduced the extent of grassy savanna and grassland formations, to the advantage of rain forest. These results support the hypothesis that the vegetation mosaic on the Bunya Mountains is a cultural artefact and testament to millennia of skilful and persistent burning. We could not conclusively reject the hypothesis that the grasslands are Pleistocene relicts that have declined throughout the Holocene; nonetheless, an explanation more consistent with the evidence overall is that the grasslands must have had periods of expansion during the Holocene, probably as a consequence of severe fires that have destroyed patches of rain forest.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12306\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Butler, Don W.; Fensham, Rod; Murphy, Brett P.; Bury, Sarah J.; Bowman, David M. J. S.; Haberle, Simon; Brett P. Murphy; Sarah J. Bury; David M. J. S. Bowman; Simon G. Haberle; Don W. Butler; Roderick J. Fensham\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.214181365281173\",\"y\":\"-0.281557825509733\",\"labels\":\"doi_dedup___::5424a60cc6da25220d38f5e334e739d4\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"subject\":\"0106 biological sciences\",\"title\":\"Alternative stable states and the role of fire\\u2013vegetation\\u2013soil feedbacks in the temperate wilderness of southwest Tasmania\",\"year\":\"2011-11-06\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-011-9677-0\",\"fulltext\":\"\",\"paper_abstract\":\"Two ecological models have been put forward to explain the dynamics of fire-promoting and fire-sensitive vegetation in southwest Tasmania: the alternative stable states model of Jackson (in Proc Ecol Soc Aust 3:9\\u201316, 1968) and the sharpening switch model of Mount (in Search 10:180\\u2013186, 1979). Assessing the efficacy of these models requires high resolution spatio-temporal data on whether vegetation patterns are stable or dynamic across landscapes. We analysed ortho-rectified sequences of aerial photography and satellite imagery from 1948, 1988 and 2010 to detect decadal scale changes in forest and non-forest vegetation cover in southwest Tasmania. There was negligible change from forest to non-forest (\u003C0.05%) and only a modest change from non-forest to forest over the study period. Forest cover increased by 4.1% between 1948 and 1988, apparently due to the recovery of forest vegetation following stand-replacing fire prior to 1948. Forest cover increased by 0.8% between 1988 and 2010, reflecting the limited ability of forest to invade treeless areas. The two models include interactions between vegetation, fire and soil, which we investigated by analysing the chemical (phosphorus, nitrogen) and physical properties (clay, silt) of 128 soil samples collected across 34 forest\\u2013non-forest boundaries. Phosphorus in the upper horizon was typically lower in non-forest vegetation compared to forest vegetation, which is consistent with proposed fire\\u2013vegetation\\u2013soil feedbacks. Mineral horizons were dominated by sand, with low levels of clay under all vegetation types. Available field evidence lends support to the Jackson (1968) alternative stable states model as the most suitable model of vegetation dynamics on nutrient poor substrates in southwest Tasmania although modifications of the timeframes for transitions toward rainforest are required.\",\"doi\":\"10.1007\\/s10980-011-9677-0\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Samuel W. Wood; David M. J. S. Bowman; Sam W. Wood\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"cluster_labels\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\",\"x\":\"0.363903148059666\",\"y\":\"-0.104475505046146\",\"labels\":\"doi_dedup___::5a28071378d0a6878ab94ca168cbff86\",\"area_uri\":2,\"area\":\"0106 biological sciences, 13. climate action, Giant eucalypt forests\"},{\"id\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"subject\":\"0106 biological sciences\",\"title\":\"Has global environmental change caused monsoon rainforests to expand in the Australian monsoon tropics?\",\"year\":\"2010-06-24\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Landscape Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.1007\\/s10980-010-9496-8\",\"fulltext\":\"\",\"paper_abstract\":\"A large research program in the Australian monsoon tropics has concluded that monsoon rainforests have expanded within the savanna matrix, a trend that has been emulated throughout the tropics worldwide. The driver of the northern Australian trend was not resolved, but it was suggested to be linked to a long-term trend towards wetter climates, atmospheric CO2 enrichment, and changed fire regimes. We review these findings with particular consideration of its analytical and evidentiary basis and plausibility of the global change hypothesis. Field validation has largely demonstrated that the aerial photographic technique that underpinned the previous research is reliable enough to detect rainforest expansion. Statistical modelling demonstrated that the expansion is related to sites with regionally low fire activity, although models are of low explanatory power reflecting the sketchy historical records of fire and feral animal impacts. Field studies show that current fire regimes adjacent to expanding rainforest patches are causing populations of the native conifer Callitris intratropica, an obligate seeder, to crash. Therefore, it is unlikely that changes in fire regimes, which have been deleterious to other fire-sensitive taxa and plant communities in the region, are responsible for the rainforest expansion. We conclude that the expansion of monsoon rainforests is most plausibly linked to the current wetting trend or elevated CO2 concentration. Increases in either water availability or CO2 concentration can potentially overwhelm the negative feedback between fire and rainforest cover that is responsible for the meta-stability of monsoon rainforest boundaries. However, further research at the continental scale, using aerial photography, tree rings and other proxies, is required to evaluate this hypothesis.\",\"doi\":\"10.1007\\/s10980-010-9496-8\",\"project_id\":\"LP0346929\",\"accessright\":\"Closed Access\",\"authors\":\"David M. J. S. Bowman; Daniel S. Banfai; Brett P. Murphy; Brett P. Murphy; Daniel S. Banfai; David M. J. S. Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.188262242757116\",\"y\":\"-0.114417703128843\",\"labels\":\"doi_dedup___::7cbcf39e1f8d9712acd1f136fe8ea165\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"subject\":\"0301 basic medicine\",\"title\":\"Australia\\u2014A Model System for the Development of Pyrogeography\",\"year\":\"2011-04-01\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Fire Ecology\",\"link\":\"https:\\/\\/doi.org\\/10.4996\\/fireecology.0701005\",\"fulltext\":\"\",\"paper_abstract\":\"We define pyrogeography as an integrative, multidisciplinary perspective of landscape fire, its ecological effects, and its relationships with human societies. Like biogeography, this program spans geographic scales from the local to the global, has an evolutionary frame, and thus a geological dimension. And, like other geographic disciplines, pyrogeography has a clear commitment to understanding the interrelationships between cultures and their environment. We illustrate our approach by considering the pyrogeography of Australia. We demonstrate how a long history of fire has had a pervasive influence on the continent\\u2019s biota. While Aborigines coexisted with flammable landscapes for millennia, contemporary Australian society is still learning to live in a land of fire.\",\"doi\":\"10.4996\\/fireecology.0701005\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Brett P. Murphy; David M. J. S. Bowman; Brett P. Murphy; David M. J. S. Bowman\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0561772020500714\",\"y\":\"0.441696304061327\",\"labels\":\"doi_dedup___::7f5593e14327f3c66e14520a2667063e\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"subject\":\"0106 biological sciences\",\"title\":\"Fire regimes and woody biomass dynamics in Australian savannas\",\"year\":\"2013-08-30\",\"publisher\":\"Wiley\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Journal of Biogeography\",\"link\":\"https:\\/\\/doi.org\\/10.1111\\/jbi.12204\",\"fulltext\":\"\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EAim\u003C\\/jats:title\u003E\u003Cjats:p\u003EMany tropical savannas are undergoing a trend of increasing woody biomass, or \\u2018woody thickening\\u2019. Management to reduce fire frequency and intensity in savannas could substantially increase the amount of carbon stored in woody biomass. We addressed two questions: (1) are northern Australian savannas thickening; and (2) to what extent, and by what demographic processes, does fire affect woody biomass accumulation?\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003ELocation\u003C\\/jats:title\u003E\u003Cjats:p\u003EThree large national parks, covering 24,000\\u00a0km\u003Cjats:sup\u003E2\u003C\\/jats:sup\u003E, in monsoonal northern Australia.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMethods\u003C\\/jats:title\u003E\u003Cjats:p\u003EWe examined changes in woody biomass carbon stocks \\u2013 inferred from tree basal area and the density of woody understorey plants \\u2013 over a 10\\u2010year period in 136 savanna monitoring plots. We statistically assessed these changes in relation to fire frequency and severity. We used a meta\\u2010analysis to identify general trends in woody cover in Australian savannas over the last half\\u2010century.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EResults\u003C\\/jats:title\u003E\u003Cjats:p\u003EWoody biomass carbon stocks were relatively stable across the three national parks, but rates of change were statistically indistinguishable from earlier findings of a weak thickening trend. Change was negatively correlated with fire frequency, particularly the frequency of severe fires. High frequencies of severe fires decreased rates of accumulation of biomass by existing trees (through reductions in tree growth and death of individual stems), rather than whole\\u2010tree mortality and suppression of recruitment. However, across northern Australia, our meta\\u2010analysis identified a general, albeit weak, trend of woody thickening.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\u003Cjats:sec\u003E\u003Cjats:title\u003EMain conclusions\u003C\\/jats:title\u003E\u003Cjats:p\u003EThe drivers of northern Australia's weak thickening trend are uncertain, but likely candidates include increasing atmospheric \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E concentration and water availability, and pastoral intensification. We demonstrate that changes to fire management have the potential to either increase or decrease rates of woody thickening relative to any underlying trend. Understanding how savanna fires affect woody biomass, and how fire effects are mediated by climate and \u003Cjats:styled-content style=\\\"fixed-case\\\"\u003ECO\u003C\\/jats:styled-content\u003E\u003Cjats:sub\u003E2\u003C\\/jats:sub\u003E, are essential research priorities to predict the fate of savannas.\u003C\\/jats:p\u003E\u003C\\/jats:sec\u003E\",\"doi\":\"10.1111\\/jbi.12204\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Caroline E. R. Lehmann; Caroline E. R. Lehmann; Brett P. Murphy; Brett P. Murphy; Caroline E. R. Lehmann; Jeremy Russell\\u2010Smith; Michael J. Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.250484439327965\",\"y\":\"-0.37778601916065\",\"labels\":\"doi_dedup___::9b6a6075a2a3a6ef4e25a5cdf2c1da53\",\"area_uri\":3,\"area\":\"0106 biological sciences\"},{\"id\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"subject\":\"0106 biological sciences\",\"title\":\"Population collapse of a Gondwanan conifer follows the loss of Indigenous fire regimes in a northern Australian savanna\",\"year\":\"2022-05-31\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Scientific Reports\",\"link\":\"https:\\/\\/doi.org\\/https:\\/\\/doi.org\\/10.1038\\/s41598-022-12946-3\",\"fulltext\":\"http:\\/\\/purl.org\\/au-research\\/grants\\/arc\\/DP150101777\",\"paper_abstract\":\"\u003Cjats:title\u003EAbstract\u003C\\/jats:title\u003E\u003Cjats:p\u003EColonialism has disrupted Indigenous socioecological systems around the globe, including those supported by intentional landscape burning. Because most disruptions happened centuries ago, our understanding of Indigenous fire management is largely inferential and open to debate. Here, we investigate the ecological consequences of the loss of traditional Aboriginal fire management on fire-exposed savannas on the Arnhem Plateau, northern Australia, using the fire-sensitive conifer \u003Cjats:italic\u003ECallitris intratropica\u003C\\/jats:italic\u003E as a bio-indicator. We contrast Kakadu National Park, where traditional Aboriginal fire management was severely disrupted during the early twentieth century following Aboriginal relocation to surrounding settlements, and an adjacent Aboriginal estate where traditional Aboriginal fire management endures. Since 2006, traditional Aboriginal fire management at this site has been overlaid by a program of broad-scale institutionalized burning in the early dry season, designed to reduce greenhouse emissions. Using remote sensing, field survey, and dendrochronology, we show that on the Aboriginal estate, \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E populations depend on the creation of a shifting patch mosaic of long unburned areas necessary for the recruitment of \u003Cjats:italic\u003EC. intratropica.\u003C\\/jats:italic\u003E However, the imposition of broad-scale fire management is disrupting this population patch dynamic. In Kakadu, there have been extreme declines of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E associated with widespread fires since the mid twentieth century and consequent proliferation of grass fuels. Fire management in Kakadu since 2007, designed to increase the size and abundance of patches of unburned vegetation, has not been able to reverse the population collapse of \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E. Our study demonstrates that colonial processes including relocation of Indigenous people and institutional fire management can have deleterious consequences that are nearly irreversible because of hysteresis in \u003Cjats:italic\u003EC. intratropica\u003C\\/jats:italic\u003E population dynamics.\u003C\\/jats:p\u003E\",\"doi\":\"10.1038\\/s41598-022-12946-3\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Bowman, DMJS; Williamson, GJ; Johnston, FH; Bowman, CJW; Murphy, BP; Roos, CI; Trauernicht, C; Rostron, J; Prior, LD; Bowman, DMJS; Prior, LD; Haverkamp, C; Rann, KD; Donald C. Franklin; Sean M. Bellairs; Pascale Taplin; Michael J. Lawes; Brook, B.; Prior, L.; Bowman, D.; Walsh, Angie; Bowman, David M. J. S.; Whitehead, Peter J.; Price, Owen; Rosanne D'Arrigo; Jonathan G. Palmer; Patrick J. Baker; Brittany Dahl; Declan Norrie; Kathryn Allen; Lynda D. Prior; David J. M. S. Bowman; Scott Nichols; Jonathan G. Palmer; Matthew Brookhouse; Ben J. French; David M. J. S. Bowman; David M. J. S. Bowman; Owen Price; Nichols, SC; MacDermott, HJ; Bowman, DMJS; Murphy, BP; Russell-Smith, Jeremy; Yibarbuk, D.; Cooke, P; Bowman, David M. J. S.; Jackson, DM; Whitehead, Peter J.; Fisher, Alaric; Godjuwa, C; Choquenot, D; David M. J. S. Bowman; Stuart Pearson; Kathryn Allen; Quan Hua; Brett P. Murphy; David M. J. S. Bowman; Talia E. Portner; Clay Trauernicht; Wanner, J\\u00fcrgen; Buchbauer, Gerhard; Jirovetz, Leopold; Schmidt, Erich; Bowman, David M. J. S.; Murphy, Brett P.; Roos, Christopher I.; Rostron, Joshua; Williamson, Grant J.; Johnston, Fay H.; Bowman, Clarence J. W.; Trauernicht, Clay; Prior, Lynda D.; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; Brett P. Murphy; Christopher I. Roos; Fay H. Johnston; Clarence J. W. Bowman; David M. J. S. Bowman; Grant J. Williamson; Clay Trauernicht; Lynda D. Prior; Joshua Rostron; David M J S, Bowman; Christopher I, Roos; Fay H, Johnston; Brett P, Murphy; Joshua, Rostron; Lynda D, Prior; Grant J, Williamson; Clay, Trauernicht; Clarence J W, Bowman\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":1,\"url\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"cluster_labels\":\"0106 biological sciences, 0301 basic medicine\",\"x\":\"-0.0231958227792847\",\"y\":\"0.278514210389028\",\"labels\":\"doi_dedup___::9d67f67aece20a8e050eb2742c68b198\",\"area_uri\":1,\"area\":\"0106 biological sciences, 0301 basic medicine\"},{\"id\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"subject\":\"0301 basic medicine\",\"title\":\"Unique Responsiveness of Angiosperm Stomata to Elevated CO2 Explained by Calcium Signalling\",\"year\":\"2013-11-20\",\"publisher\":\"Public Library of Science (PLoS)\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"PLoS ONE\",\"link\":\"https:\\/\\/doi.org\\/10.1371\\/journal.pone.0082057\",\"fulltext\":\"\",\"paper_abstract\":\"Angiosperm and conifer tree species respond differently when exposed to elevated CO2, with angiosperms found to dynamically reduce water loss while conifers appear insensitive. Such distinct responses are likely to affect competition between these tree groups as atmospheric CO2 concentration rises. Seeking the mechanism behind this globally important phenomenon we targeted the Ca(2+)-dependent signalling pathway, a mediator of stomatal closure in response to elevated CO2, as a possible explanation for the differentiation of stomatal behaviours. Sampling across the diversity of vascular plants including lycophytes, ferns, gymnosperms and angiosperms we show that only angiosperms possess the stomatal behaviour and prerequisite genetic coding, linked to Ca(2+)-dependent stomatal signalling. We conclude that the evolution of Ca(2+)-dependent stomatal signalling gives angiosperms adaptive benefits in terms of highly efficient water use, but that stomatal sensitivity to high CO2 may penalise angiosperm productivity relative to other plant groups in the current era of soaring atmospheric CO2.\",\"doi\":\"10.1371\\/journal.pone.0082057\",\"project_id\":\"DP0878177\",\"accessright\":\"Open Access\",\"authors\":\"Scott A. M. McAdam; Timothy J. Brodribb; Scott A M, McAdam; Timothy J, Brodribb; Scott A. M. McAdam; Timothy J. Brodribb; Brodribb, Timothy J.; McAdam, Scott A. M.; Timothy J Brodribb; Scott A M McAdam\",\"subject_orig\":\"0301 basic medicine\",\"oa_state\":1,\"url\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"cluster_labels\":\"0301 basic medicine\",\"x\":\"-0.543985837479226\",\"y\":\"0.0858289826142518\",\"labels\":\"doi_dedup___::af584b153c2cdb958ac3d065f932fb5f\",\"area_uri\":4,\"area\":\"0301 basic medicine\"},{\"id\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"subject\":\"0106 biological sciences\",\"title\":\"Are the eucalypt and non-eucalypt components of Australian tropical savannas independent?\",\"year\":\"2010-11-10\",\"publisher\":\"Springer Science and Business Media LLC\",\"resulttype\":\"publication\",\"language\":\"\",\"published_in\":\"Oecologia\",\"link\":\"https:\\/\\/espace.cdu.edu.au\\/view\\/cdu:37682\",\"fulltext\":\"\",\"paper_abstract\":\"Eucalypts (Eucalyptus and Corymbia spp.) dominate (60%) the tree biomass of Australia's tropical savannas but account for only a fraction (28%) of the tree diversity. Because of their considerable biomass and adaptation to environmental stressors, such as fire, the eucalypts may drive tree dynamics in these savannas, possibly to the exclusion of non-eucalypts. We evaluated whether the eucalypt and non-eucalypt components in tropical savannas are dependent so that changes in one component are matched by opposite trends in the other. Using tree inventory data from 127 savanna sites across the rainfall and fire frequency gradients, we found that eucalypt and non-eucalypt basal area and species richness had a negative relationship. This relationship was maintained across the rainfall gradient, with rainfall having a positive effect on the basal area and species richness of both components, but with a greater effect in non-eucalypts. Fire frequency negatively affected basal area, but not species richness, although basal area and species richness of eucalypts and non-eucalypts did not differ in their response to fire. Rainfall appears to set the upper bounds to woody biomass in these mesic savannas, while fire maintains woody biomass below carrying capacity and facilitates coexistence of the components. The magnitude of the component responses, particularly for non-eucalypts, is determined by rainfall, but their dependence is likely due to their differential response to both rainfall and fire, but not to competition for resources. Thus, while eucalypts dominate biomass overall, at high rainfall sites non-eucalypt basal area and diversity are highest, especially where fire frequency is low.\",\"doi\":\"10.1007\\/s00442-010-1829-4\",\"project_id\":\"DP0878177\",\"accessright\":\"Closed Access\",\"authors\":\"Michael J. Lawes; Jeremy Russell-Smith; Jeremy J. Midgley; Brett P. Murphy; J. Russell-Smith; M. J. Lawes; B. P. Murphy; J. J. Midgley; B P, Murphy; J, Russell-Smith; J J, Midgley; M J, Lawes\",\"subject_orig\":\"0106 biological sciences\",\"oa_state\":0,\"url\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"cluster_labels\":\"0106 biological sciences\",\"x\":\"-0.157225822455321\",\"y\":\"-0.438046176985289\",\"labels\":\"doi_dedup___::bdb359a4581133463ee3ce28d1fc83f5\",\"area_uri\":3,\"area\":\"0106 biological sciences\"}]"} \ No newline at end of file From b9248adb51dc85464c37f4241254fb0fd0af456e Mon Sep 17 00:00:00 2001 From: Andrei Date: Wed, 3 Dec 2025 16:27:30 +0100 Subject: [PATCH 10/11] Create README.md --- local_dev/tools/db-insertion/README.md | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 local_dev/tools/db-insertion/README.md diff --git a/local_dev/tools/db-insertion/README.md b/local_dev/tools/db-insertion/README.md new file mode 100644 index 000000000..1652abfd7 --- /dev/null +++ b/local_dev/tools/db-insertion/README.md @@ -0,0 +1,21 @@ +# About that folder + +This folder contains code that allows adding visualization information to the database. + +> [!TIP] +> This can be useful when, for example, due to errors on the part of other services (not ours), we are unable to create a visualization, but such visualization is necessary for testing or development. To avoid stopping work and blocking the task, visualisation can be added to the database using this code. + +## How does it all work? + +To work with this functionality, it is important to understand two main entities: `insert.py` and configuration files for each service. + +The `insert.py` file is universal code that can write visualization information to the database for any service. To do this, you only need to specify the desired service in the `insert.py` file (or, in other words, connect the necessary configuration). + +Services and their configurations are stored in folders such as `./BASE/` or `./OpenAIRE/`. These folders contain two files: `.json` and `config.json`: +- The `.json` file stores visualization data that will be used to build the visualization on the client; +- The `config.json` file stores the rest of the information that is important for creating a database record and will also be partially used on the client. + +To connect the required service, simply make a change in line 7 in the `insert.py` file - this is the line where the path to a configuration (variable `CONFIG_PATH`) is created. You need to replace the service name with the required one. + +> [!IMPORTANT] +> The name of the service must match the name of the folder where its configurations are stored. Pay attention to the case of the characters! From 565e5c33f35f5df216c308a3f9692e14d2e007fd Mon Sep 17 00:00:00 2001 From: andrei Date: Wed, 3 Dec 2025 16:28:11 +0100 Subject: [PATCH 11/11] refactor: remove comments --- local_dev/tools/db-insertion/insert.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/local_dev/tools/db-insertion/insert.py b/local_dev/tools/db-insertion/insert.py index 2725f31bb..e9f5f1ad4 100644 --- a/local_dev/tools/db-insertion/insert.py +++ b/local_dev/tools/db-insertion/insert.py @@ -3,11 +3,9 @@ from pathlib import Path -# Before starting, you can change the path to the configuration for the desired integration and set of files. BASE_DIR = Path(__file__).resolve().parent -CONFIG_PATH = BASE_DIR / "OpenAIRE" / "config.json" # Change integration folder name here. +CONFIG_PATH = BASE_DIR / "OpenAIRE" / "config.json" -# Fallbacks VISUALIZATION_DATA = [] ENDPOINT_URL = "http://127.0.0.1:8081/dev/persistence/createVisualization/dev"