Is your feature request related to a problem? Please describe.
The protocol currently has no analysis however, in future, we might want to expose some options which could automatically be run after the simulation, such as rmsd or interaction fingerprints, rather than expecting the user to do it on the output trajectory and a dedicated analysis unit would be a great way to do this.
Describe the solution you'd like
Describe alternatives you've considered
Additional context
Is your feature request related to a problem? Please describe.
The protocol currently has no analysis however, in future, we might want to expose some options which could automatically be run after the simulation, such as rmsd or interaction fingerprints, rather than expecting the user to do it on the output trajectory and a dedicated analysis unit would be a great way to do this.
Describe the solution you'd like
Describe alternatives you've considered
Additional context