AE_rerun_cross-optimization.sh

#!/bin/bash


DIR=$VSIM_HOME/test/cross-optimization

echo "Clean cached files"
rm $DIR/table_1.json

if [[ $1 == 'full' ]]; then
        echo "Full rerun selected"
        cd $DIR
        rm -rf logs fp-no-refine fp-refined
        rm -rf cache
        rm -rf dump
        find . -name "*.df.pkl" | xargs rm -rf
        find . -name "*.df.*.pkl" | xargs rm -rf
        find . -name "*.csv.pkl" | xargs rm -rf

        mkdir -p logs

        echo "Running value extraction (This can take several hours)"
        cd $VSIM_HOME
        bash $DIR/se_cmds.txt
        if [ ! -d "$DIR/dump" ]; then
                echo "No dumped files. Exit"
                exit 1
        fi

        echo "Running fingerprint generation (This can take several hours)"
        python $DIR/fp-gen.py
        if [ ! -d "$DIR/fp-refined" ]; then
                echo "No refined fingerprints. Exit"
                exit 1
        fi

        python $DIR/fp-no-refine-gen.py
        if [ ! -d "$DIR/fp-no-refine" ]; then
                echo "No no-refine fingerprints. Exit"
                exit 1
        fi
fi

cd $VSIM_HOME
echo "Running comparison"
python $DIR/test_pool_pairwise_match.py

echo "There should be a newly generated $DIR/table_1.json"

echo "Show result of Table III"
python $DIR/show_table.py -i $DIR/table_1.json