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Merge pull request #169 from OSIPI/fix-oipy-path
update path for python package
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docs/pyCode.md

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@@ -4,24 +4,24 @@ OSIPI supports a suite of open-source codebases for reproducible and standardize
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!!! abstract "Main OSIPI Python Package"
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Core Python tools for perfusion MRI analysis, integrating community code aligned with OSIPI lexicons.
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[📘 Osipi python package docs](https://osipi.github.io/osipi/)
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[🧪 GitHub Repository](https://github.com/OSIPI/osipi)
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[📘 Osipi python package docs](https://osipi.github.io/osipy/)
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[🧪 GitHub Repository](https://github.com/OSIPI/osipy)
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!!! abstract "(TF2.2) ASL Toolbox Test Report"
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Detailed test documentation for ASL code functions, covering preprocessing and quantification.
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[📘 ASL Toolbox Test Report](https://github.com/OSIPI/TF2.2_OSIPI-ASL-toolbox/blob/main/ASL_functionalities_test_report_Github.docx)
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[🧪 GitHub Repository](https://github.com/OSIPI/TF2.2_OSIPI-ASL-toolbox)
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!!! abstract "(TF2.3) DCE/DSC Code Collection"
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Validated code snippets and tools for DCE/DSC-MRI analysis with automated testing and performance reports.
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[📘 DCE/DSC Code Collection Docs](https://osipi.github.io/DCE-DSC-MRI_TestResults/intro.html)
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[🧪 GitHub Repository](https://github.com/osipi/DCE-DSC-MRI_TestResults/)
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!!! abstract "(TF2.4) IVIM Code Repository"
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Multi-language IVIM analysis code, with model fitting routines and active community development.
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[📘 IVIM Code Repository Docs](https://osipi.github.io/TF2.4_IVIM-MRI_CodeCollection/)
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[🧪 GitHub Repository](https://github.com/osipi/TF2.4_IVIM-MRI_CodeCollection/)

mkdocs.yml

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link: https://app.slack.com/client/TFGVCE9HS
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extra_css:
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- assets/stylesheets/extra.css
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- assets/stylesheets/extra.css
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extra_javascript:
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- js/mathjax-config.js
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- https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js
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# Extensions
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markdown_extensions:
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- abbr
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- Lexicons:
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- Overview: lexicons.md
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- "(TF4.1) ASL Lexicon": https://osipi.github.io/ASL-Lexicon/
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- "(TF4.2) Caplex – Contrast-agent based perfusion MRI": '!import https://github.com/OSIPI/OSIPI_CAPLEX?branch=main&docs_dir=docs&multi_docs=True&config=mkdocs.yml&keep_docs_dir=true'
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- "(TF4.2) Caplex – Contrast-agent based perfusion MRI": "!import https://github.com/OSIPI/OSIPI_CAPLEX?branch=main&docs_dir=docs&multi_docs=True&config=mkdocs.yml&keep_docs_dir=true"
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- Python Code Repositories:
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- Overview: pyCode.md
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- "OSIPI Python package":
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- Documentation: https://osipi.github.io/osipi
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- Documentation: https://osipi.github.io/osipy
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- "(TF2.2) ASL repository":
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- Documentation: https://github.com/OSIPI/TF2.2_OSIPI-ASL-toolbox/blob/main/ASL_functionalities_test_report_Github.docx
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- Documentation: https://github.com/OSIPI/TF2.2_OSIPI-ASL-toolbox/blob/main/ASL_functionalities_test_report_Github.docx
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- "(TF2.3) DCE/DSC repository":
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- Documentation: https://osipi.github.io/DCE-DSC-MRI_CodeCollection/
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- Documentation: https://osipi.github.io/DCE-DSC-MRI_CodeCollection/
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# DCE-DSC-MRI_CodeCollection github pages is currently not setup - once setup, this will redirect to that page
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- "(TF2.4) IVIM repository":
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- Documentation: https://osipi.github.io/TF2.4_IVIM-MRI_CodeCollection/
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- "(TF2.4) IVIM repository":
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- Documentation: https://osipi.github.io/TF2.4_IVIM-MRI_CodeCollection/
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- Tools:
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- Overview: tools.md

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