ARTEMIS/NAMESPACE at main · OHDSI/ARTEMIS · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
# Generated by roxygen2: do not edit by hand

export("%>%")
export("%m+%")
export(cleanByBlacklist)
export(createDrugDF)
export(decode)
export(defaultSmatrix)
export(encode)
export(filter_stringDF)
export(generateCohortStats)
export(generateRawAlignments)
export(generateRegimenStats)
export(getConDF)
export(loadCohort)
export(loadDrugs)
export(loadGroups)
export(loadRegimens)
export(plotAlignment)
export(plotErasFrequency)
export(plotFrequency)
export(plotRegimenLengthDistribution)
export(plotSankey)
export(plotScoreDistribution)
export(processAlignments)
export(py_lib_install)
export(stringDF_from_cdm)
export(validConditions)
export(writeOutputs)
importFrom(RColorBrewer,brewer.pal)
importFrom(data.table,":=")
importFrom(data.table,.I)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,count)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,lag)
importFrom(dplyr,lead)
importFrom(dplyr,mutate)
importFrom(dplyr,reframe)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,slice_head)
importFrom(dplyr,summarise)
importFrom(dplyr,vars)
importFrom(forcats,fct_reorder)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_linetype_manual)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggtext,element_markdown)
importFrom(lubridate,"%m+%")
importFrom(magrittr,"%>%")
importFrom(tidyr,separate)
importFrom(tidyr,separate_rows)