I mistakenly used the LFQ-MBR workflow on DIA data. FragPipe seems to analyze them without encountering any error. Can you please inform me whether the result is valid?
Another unrelated question: Can you guide me on how to annotate DIA-NN output with FASTA on FragPipe? This means obtaining the pg.group result to display the names and descriptions of the proteins. This task can be done easily on native DIA-NN.
I mistakenly used the LFQ-MBR workflow on DIA data. FragPipe seems to analyze them without encountering any error. Can you please inform me whether the result is valid?
Another unrelated question: Can you guide me on how to annotate DIA-NN output with FASTA on FragPipe? This means obtaining the pg.group result to display the names and descriptions of the proteins. This task can be done easily on native DIA-NN.