Skip to content

Commit 9f7ef6d

Browse files
Update genomic-order-management-service-api-v5.1.yaml
Addressing white space issue
1 parent bc32a7f commit 9f7ef6d

1 file changed

Lines changed: 45 additions & 47 deletions

File tree

specification/alpha/genomic-order-management-service-api-v5.1.yaml

Lines changed: 45 additions & 47 deletions
Original file line numberDiff line numberDiff line change
@@ -17,7 +17,7 @@ info:
1717
1818
* increased access to molecular diagnostics and offer genomic testing
1919
routinely to all people with cancer
20-
20+
2121
* improve early detection and treatment of high-risk conditions including
2222
expanding genomic testing for familial hypocholesterolaemia
2323
@@ -105,14 +105,14 @@ info:
105105
106106
107107
The API's provide the core capabilities around the patient Unified Genomic
108-
Record (**UGR**).
108+
Record (**UGR**).
109109
110110
111111
## Who can use this API
112112
This API can only be used where there is a legal basis to do so. Make sure you have a valid use case before you go too far with your development.
113113
114114
## Related APIs
115-
115+
116116
### Services
117117
118118
These services must be used alongside genomic order management service to
@@ -206,13 +206,6 @@ info:
206206
* we expect to make breaking changes based on developer feedback
207207
208208
209-
To see our roadmap, or to suggest, comment or vote on features for this API,
210-
see our [interactive product
211-
backlog](https://nhs-digital-api-management.featureupvote.com/?tag=genomics-diag-order-management).
212-
213-
214-
If you have any other queries, please [contact
215-
us](https://digital.nhs.uk/developer/help-and-support).
216209
217210
218211
## Service level
@@ -235,7 +228,7 @@ info:
235228
[FHIR](https://digital.nhs.uk/developer/guides-and-documentation/our-api-technologies#fhir)
236229
global standard for health care data exchange, specifically to [FHIR R4
237230
(v4.0.1)](https://hl7.org/fhir/r4/), except that it does not support the
238-
[capabilities](http://hl7.org/fhir/R4/http.html#capabilities) interaction.
231+
[capabilities](http://hl7.org/fhir/R4/http.html#capabilities) interaction.
239232
240233
Refer to [Genomics FHIR
241234
IG](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home)
@@ -309,7 +302,7 @@ info:
309302
310303
**FOR ALPHA** phase the API would be demonstrated using
311304
application-restricted access using [API key
312-
authentication](https://digital.nhs.uk/developer/guides-and-documentation/security-and-authorisation/application-restricted-restful-apis-api-key-authentication).
305+
authentication](https://digital.nhs.uk/developer/guides-and-documentation/security-and-authorisation/application-restricted-restful-apis-api-key-authentication).
313306
314307
315308
**FOR PRIVATE BETA / LIVE** phase the API would be [user-restricted
@@ -352,13 +345,13 @@ info:
352345
353346
|------------------|---------------------------------------------------------------------|
354347
355-
| Sandbox (N/A)
348+
| Sandbox (N/A)
356349
|`https://sandbox.api.service.nhs.uk/genomic-order-management-service`|
357350
358-
| Integration
351+
| Integration
359352
|`https://int.api.service.nhs.uk/genomic-order-management-service`|
360353
361-
![Postman](https://run.pstmn.io/button.svg) collection to test against [INT environment](https://github.com/NHSDigital/genomic-order-management-service-api/tree/main/tests).
354+
![Postman](https://run.pstmn.io/button.svg) collection to test against [INT environment](https://github.com/NHSDigital/genomic-order-management-service-api/tree/main/tests).
362355
363356
### Sandbox testing
364357
@@ -413,6 +406,11 @@ info:
413406
414407
To understand how our online digital onboarding process works, see [digital
415408
onboarding](https://digital.nhs.uk/developer/guides-and-documentation/digital-onboarding#using-the-digital-onboarding-portal).
409+
410+
## Contact us
411+
412+
For help and support connecting to our APIs and to join our developer community, see [Help and support building healthcare software](https://digital.nhs.uk/developer/help-and-support).
413+
416414
x-spec-publication:
417415
operation-order:
418416
- operations:
@@ -467,8 +465,8 @@ paths:
467465
summary: Process genomic test request
468466
description: |
469467
## Overview
470-
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
471-
register a **new test or update tests or add reports etc**. This end point uses FHIR [bundle](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/Bundle) of type **transaction** and the list of resources that forms the payload are listed [here](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/Build/How-to-construct-Bundles).
468+
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
469+
register a **new test or update tests or add reports etc**. This end point uses FHIR [bundle](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/Bundle) of type **transaction** and the list of resources that forms the payload are listed [here](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/Build/How-to-construct-Bundles).
472470
tags:
473471
- process
474472
parameters:
@@ -1604,7 +1602,7 @@ paths:
16041602
relevant information including family history,
16051603
phenotypic details/ HPO Terms/E.g. Reanlaysis -
16061604
change in observed phenotype. Epilepsy test
1607-
previously ordered on patient 5 years ago.
1605+
previously ordered on patient 5 years ago.
16081606
request:
16091607
method: POST
16101608
url: ServiceRequest
@@ -1759,7 +1757,7 @@ paths:
17591757
This endpoint allows you to retrieve the records of ServiceRequests
17601758
using various query parameters. Refer [search](https://simplifier.net/guide/FHIR-Genomics-Implementation-Guide/Home/Build/Supported-CRUD-capability#Read) for more details.
17611759
1762-
## UGR - Search for patient genomic test requests.
1760+
## UGR - Search for patient genomic test requests.
17631761
tags:
17641762
- order
17651763
- ugr
@@ -1794,7 +1792,7 @@ paths:
17941792
17951793
using logical identifier and [graph
17961794
definition](https://simplifier.net/guide/FHIR-Genomics-Implementation-Guide/Home/FHIRAssets/GraphDefinitions)
1797-
on the server.
1795+
on the server.
17981796
tags:
17991797
- order
18001798
parameters:
@@ -1844,8 +1842,8 @@ paths:
18441842
summary: Create a new Task
18451843
description: |
18461844
## Overview
1847-
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
1848-
register a **[new task](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/Task)**.
1845+
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
1846+
register a **[new task](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/Task)**.
18491847
tags:
18501848
- task
18511849
parameters:
@@ -1917,8 +1915,8 @@ paths:
19171915
summary: Update an existing Task
19181916
description: |
19191917
## Overview
1920-
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
1921-
update an existing **[task](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/Task)**.
1918+
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
1919+
update an existing **[task](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/Task)**.
19221920
tags:
19231921
- task
19241922
parameters:
@@ -2024,8 +2022,8 @@ paths:
20242022
summary: Create a new DiagnosticReport
20252023
description: |
20262024
## Overview
2027-
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
2028-
register a **[new DiagnosticReport](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-DiagnosticReport)**.
2025+
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
2026+
register a **[new DiagnosticReport](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-DiagnosticReport)**.
20292027
tags:
20302028
- report
20312029
parameters:
@@ -2131,8 +2129,8 @@ paths:
21312129
summary: Create a new Specimen
21322130
description: |
21332131
## Overview
2134-
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
2135-
register a **[new specimen](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-Specimen)**.
2132+
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
2133+
register a **[new specimen](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-Specimen)**.
21362134
tags:
21372135
- specimen
21382136
parameters:
@@ -2188,8 +2186,8 @@ paths:
21882186
summary: Update an existing Specimen
21892187
description: |
21902188
## Overview
2191-
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
2192-
update an existing **[specimen](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-Specimen)**.
2189+
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
2190+
update an existing **[specimen](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-Specimen)**.
21932191
tags:
21942192
- specimen
21952193
parameters:
@@ -2256,7 +2254,7 @@ paths:
22562254
## Overview
22572255
22582256
This endpoint allows you to retrieve the record of a patient held within genomic order management service using various query parameters. Refer [search](https://simplifier.net/guide/FHIR-Genomics-Implementation-Guide/Home/Build/Supported-CRUD-capability#Read) for more details.
2259-
2257+
22602258
## UGR - Search for patient genomic record
22612259
tags:
22622260
- patient
@@ -2279,8 +2277,8 @@ paths:
22792277
summary: Update an existing Patient
22802278
description: |
22812279
## Overview
2282-
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
2283-
update an existing **[patient](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-Patient)**.
2280+
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
2281+
update an existing **[patient](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-Patient)**.
22842282
tags:
22852283
- patient
22862284
parameters:
@@ -2437,8 +2435,8 @@ paths:
24372435
summary: Update an existing PractitionerRole
24382436
description: |
24392437
## Overview
2440-
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
2441-
update an existing **[PractitionerRole](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-PractitionerRole)**.
2438+
[FHIR Restful](https://hl7.org/fhir/R4/http.html) endpoint to
2439+
update an existing **[PractitionerRole](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-PractitionerRole)**.
24422440
tags:
24432441
- practitionerrole
24442442
parameters:
@@ -2547,17 +2545,17 @@ paths:
25472545
25482546
25492547
| Scenario |
2550-
Request
2548+
Request
25512549
|
2552-
Response
2550+
Response
25532551
|
25542552
25552553
| ----------------------------------------|
25562554
----------------------------------------------------------------------------------------------------------------------------------------------------------------|
25572555
------------------------------------------------------------------------|
25582556
2559-
|
2560-
|
2557+
|
2558+
|
25612559
|
25622560
|
25632561
tags:
@@ -2591,18 +2589,18 @@ paths:
25912589
25922590
25932591
| Scenario |
2594-
Request
2592+
Request
25952593
|
2596-
Response
2594+
Response
25972595
|
25982596
25992597
| ----------------------------------------|
26002598
----------------------------------------------------------------------------------------------------------------------------------------------------------------|
26012599
------------------------------------------------------------------------|
26022600
2603-
|
2604-
|
2605-
|
2601+
|
2602+
|
2603+
|
26062604
|
26072605
tags:
26082606
- history
@@ -2777,7 +2775,7 @@ components:
27772775
description: >-
27782776
This element is deprecated because it is XML specific.
27792777
It is replaced by issue.expression, which is format
2780-
independent, and simpler to parse.
2778+
independent, and simpler to parse.
27812779
27822780
27832781
For resource issues, this will be a simple XPath
@@ -3948,7 +3946,7 @@ components:
39483946
- entry
39493947
description: >-
39503948
A Bundle containing [FHIR
3951-
ServiceRequest](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-ServiceRequest)
3949+
ServiceRequest](https://simplifier.net/guide/fhir-genomics-implementation-guide/Home/FHIRAssets/Profiles/All-Profiles/UKCore-ServiceRequest)
39523950
history
39533951
examples:
39543952
multiple-items:
@@ -4742,7 +4740,7 @@ components:
47424740
BasedOn:
47434741
in: query
47444742
name: based-on
4745-
description: The service request reference the report related to
4743+
description: The service request reference the report related to
47464744
schema:
47474745
type: string
47484746
example: b4dccd9f-1f49-45aa-8566-3a517fc98d3d

0 commit comments

Comments
 (0)