data output

[mansonmyr]

Dear author,

I am trying to used your CellProfiler pipeline (XenopusPIPE_Submission) on the quantification of both spindle and DNA. However, the current version of CellProfiler is different thus I am unsure if there are missing module in the current pipeline when I tried to run. There is also no output file in my directory.

Could you advice on how and what can I do to run the pipeline?

Thank you!

[mansonmyr]

Update: I have used the same release version of the CellProfiler (2.1.1) and notice that there are many modules that disappear in the latest version. When i tried to run with the sample dataset, it keeps saying there is no valid image sets. i have try renaming or adding suffix .tif. It still could not run. May I know why is this happening?