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Fix IndexError / loss of data for large numbers of lanes #12

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Merged
ewels merged 1 commit into from
Dec 18, 2025
Merged

Fix IndexError / loss of data for large numbers of lanes #12

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6 changes: 4 additions & 2 deletions multiqc_sav/modules/sav/sav.py
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Original file line number Diff line number Diff line change
Expand Up @@ -670,8 +670,10 @@ def _parse_imaging_table(data: pd.DataFrame) -> dict:
if occ != prev_occ or pf != prev_pf:
prev_occ = occ
prev_pf = pf
if lane_int is not None and isinstance(lane_int, int) and lane_int < len(colors):
occ_pf[f"Lane {lane_int}"].append({"x": occ, "y": pf, "color": colors[lane_int]})
if lane_int is not None and isinstance(lane_int, int):
# Use modulo to cycle through colors for any number of lanes
color_idx = (lane_int - 1) % len(colors)
occ_pf[f"Lane {lane_int}"].append({"x": occ, "y": pf, "color": colors[color_idx]})
else:
occ_pf = {}

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