TranScribe/pyproject.toml at main · MorrissyLab/TranScribe · GitHub

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[project]
name = "transcribe"
version = "0.1.0"
description = "Tri-Agent Ontology Framework for Automated Transcriptomic Annotation"
readme = "README.md"
requires-python = ">=3.12,<3.13"
dependencies = [
    "scanpy",
    "squidpy",
    "gprofiler-official",
    "pandas",
    "matplotlib",
    "seaborn",
    "anndata",
    "click",
    "python-dotenv",
    "pydantic",
    "langchain",
    "langchain-openai",
    "langchain-google-genai",
    "langchain-pinecone",
    "langgraph",
    "pinecone",
    "distinctipy",
    "rbo",
    "setuptools<70.0",
    "openpyxl>=3.1.5",
]

[project.optional-dependencies]
dev = [
    "pytest",
]

[project.scripts]
transcribe = "transcribe.cli:main_cli"

[build-system]
requires = ["setuptools>=61.0.0", "wheel"]
build-backend = "setuptools.build_meta"

[tool.setuptools]
package-dir = {"" = "src"}

[tool.setuptools.packages.find]
where = ["src"]