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Test Data Directory (/test-data)

This directory contains static, offline snapshots of ModelSEED backend responses. These files are used for local testing, offline development, and unit test mocking.

File Inventory

File Description Size
test-model.json Full representation of a GenomeScale model (e.g., 'Deinococcus soli' strain N5). ~669KB
test-fba.json FBA result metadata for test-model. Note that this snapshot lacks flux data. ~2B
test-fba-2.json Alternative FBA representation (minimal). ~177B
test-gapfill.json Gapfill solution array and metadata for test-model. ~6KB

Backend Discrepancies and Mock Logic

When utilizing this data, be aware of known data structure anomalies returned from the API:

Model Structure (test-model.json)

  • Biomass vs Biomasses: The API returns an array named biomasses (plural). UI logic occasionally expects biomass (singular).
  • Genes: Currently missing the functions field (only returns id and name).
  • Reactions: Expected equation, stoichiometry, gpr, and genes are present.

FBA Structure (test-fba.json)

  • Missing Flux Data: The endpoint (/api/models/fba) only returns minimal summary parameters without reaction variables, compound variables, or the flux table.
  • Root Cause: While the workspace contains fba.0.fluxtbl which holds flux data, the API currently doesn't merge or return it with the main FBA object check.

Gapfill Structure (test-gapfill.json)

  • Returns solution_reactions correctly, where each object details the gapfilled reaction, direction, and compartment.