Library Directory (`/lib`)

This directory houses the shared business logic, API clients, static data configurations, and utility operations for ModelSEED UI.

Structure

Directory	Purpose
`api/`	External service client integrations (ModelSEED, workspace parsing, BV-BRC).
`data/`	Static data mapping.
`utils/`	Helper functions (e.g. data export utilities).

Root File	Purpose
`theme.ts`	Material UI (MUI v7) configuration theme logic.

This directory acts as the core interface layer to all external backend systems.

Domain	File	Purpose
Auth	`auth.ts`	PATRIC/RAST authentication workflows and storage.
Biochem	`biochem.ts`	References biochemical tables and endpoints.
ModelSEED	`modelseed.ts`	Interacts with `modelseed-api` for jobs, models, and media endpoints.
Workspace	`workspace.ts`	File manager and PATRIC workspace data mapping.
PATRIC	`patric.ts`	Genome integration operations.
State	`jobTracker.ts`	Tracking workflow and backend job execution states.
Config	`config.ts`	Environment management and feature flags mapped from `.env.local`.

General utilities for UI integration logic:

exportCsv.ts: Parsing arrays and exporting grids to standard CSV/TSV web APIs.

The theme.ts provides strict hex codes mapping the foundational user interface layout colors according to standard design language operations.

Integrates with the following primary endpoint configurations across config.ts: