From da3d7b32e2a67426533a67b9223f658ac6c12212 Mon Sep 17 00:00:00 2001 From: EnfxcFCb6 Date: Wed, 9 Jul 2025 16:08:43 -0400 Subject: [PATCH 1/2] Standardized README to Markdown format --- README.md | 35 +++++++++++++++++++++++++++++++++++ readme.html | 34 ---------------------------------- 2 files changed, 35 insertions(+), 34 deletions(-) create mode 100644 README.md delete mode 100644 readme.html diff --git a/README.md b/README.md new file mode 100644 index 0000000..feadb3a --- /dev/null +++ b/README.md @@ -0,0 +1,35 @@ +This is the readme for the model associated with the paper + +Park C, Rubin JE (2013) Cooperation of intrinsic bursting and calcium +oscillations underlying activity patterns of model pre-Botzinger +complex neurons. *J Comput Neurosci* 34:345-66 + +This model written in XPP was implemented by Jon Rubin and Choongseok +Park. + +XPP is freely available at [http://www.math.pitt.edu/~bard/xpp/xpp.html](http://www.math.pitt.edu/~bard/xpp/xpp.html) + +To run the model in its default setting start with a command like +(depends on your platform): + +xppaut OneCellTwoOsc.ode + +Once XPP starts select Initalconds -> (G)o to see a figure like this: + +![screenshot](./screenshot.png) + +Inside XPP, use File -> Read set with the included set files to get +certain dynamics from the paper: + +OneCellTwoOsc.ode.setsb <-> the paper's Fig. 2a, +![fig 2a](./fig2a.png) + +OneCellTwoOsc.ode.setdb <-> the paper's Fig. 2b, +![fig 2b](./fig2b.png) + +OneCellTwoOsc.ode.setsdb <-> the paper's Fig. 2c +![fig 2c](./fig2c.png) + +--- + +2025-07-09: Converted README to Markdown. \ No newline at end of file diff --git a/readme.html b/readme.html deleted file mode 100644 index 31c5938..0000000 --- a/readme.html +++ /dev/null @@ -1,34 +0,0 @@ -
-This is the readme for the model associated with the paper
-
-Park C, Rubin JE (2013) Cooperation of intrinsic bursting and calcium
-oscillations underlying activity patterns of model pre-Botzinger
-complex neurons. J Comput Neurosci 34:345-66
-
-This model written in XPP was implemented by Jon Rubin and Choongseok
-Park.
-
-XPP is freely available at http://www.math.pitt.edu/~bard/xpp/xpp.html
-
-To run the model in it's default setting start with a command like
-(depends on your platform):
-
-xppaut OneCellTwoOsc.ode
-
-Once XPP starts select Initalconds -> (G)o to see an figure like this:
-
-screenshot
-
-Inside XPP, use File -> Read set with the included set files to get
-certain dynamics from the paper:
-
-OneCellTwoOsc.ode.setsb <-> the paper's Fig. 2a,
-fig 2a
-
-OneCellTwoOsc.ode.setdb <-> the paper's Fig. 2b,
-fig 2b
-
-OneCellTwoOsc.ode.setsdb <-> the paper's Fig. 2c
-fig 2c
-
-
From 7feb17048b6d20c89c3564c66eff1fac58e81805 Mon Sep 17 00:00:00 2001 From: rsakai Date: Thu, 10 Jul 2025 15:06:18 -0400 Subject: [PATCH 2/2] Update README.md --- README.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index feadb3a..c7062d0 100644 --- a/README.md +++ b/README.md @@ -1,15 +1,15 @@ This is the readme for the model associated with the paper -Park C, Rubin JE (2013) Cooperation of intrinsic bursting and calcium -oscillations underlying activity patterns of model pre-Botzinger +Park C, Rubin JE (2013) Cooperation of intrinsic bursting and calcium +oscillations underlying activity patterns of model pre-Botzinger complex neurons. *J Comput Neurosci* 34:345-66 -This model written in XPP was implemented by Jon Rubin and Choongseok +This model written in XPP was implemented by Jon Rubin and Choongseok Park. XPP is freely available at [http://www.math.pitt.edu/~bard/xpp/xpp.html](http://www.math.pitt.edu/~bard/xpp/xpp.html) -To run the model in its default setting start with a command like +To run the model in its default setting start with a command like (depends on your platform): xppaut OneCellTwoOsc.ode @@ -18,7 +18,7 @@ Once XPP starts select Initalconds -> (G)o to see a figure like this: ![screenshot](./screenshot.png) -Inside XPP, use File -> Read set with the included set files to get +Inside XPP, use File -> Read set with the included set files to get certain dynamics from the paper: OneCellTwoOsc.ode.setsb <-> the paper's Fig. 2a, @@ -32,4 +32,4 @@ OneCellTwoOsc.ode.setsdb <-> the paper's Fig. 2c --- -2025-07-09: Converted README to Markdown. \ No newline at end of file +2025-07-09: Converted README to Markdown.