diff --git a/README.md b/README.md new file mode 100644 index 0000000..c7062d0 --- /dev/null +++ b/README.md @@ -0,0 +1,35 @@ +This is the readme for the model associated with the paper + +Park C, Rubin JE (2013) Cooperation of intrinsic bursting and calcium +oscillations underlying activity patterns of model pre-Botzinger +complex neurons. *J Comput Neurosci* 34:345-66 + +This model written in XPP was implemented by Jon Rubin and Choongseok +Park. + +XPP is freely available at [http://www.math.pitt.edu/~bard/xpp/xpp.html](http://www.math.pitt.edu/~bard/xpp/xpp.html) + +To run the model in its default setting start with a command like +(depends on your platform): + +xppaut OneCellTwoOsc.ode + +Once XPP starts select Initalconds -> (G)o to see a figure like this: + +![screenshot](./screenshot.png) + +Inside XPP, use File -> Read set with the included set files to get +certain dynamics from the paper: + +OneCellTwoOsc.ode.setsb <-> the paper's Fig. 2a, +![fig 2a](./fig2a.png) + +OneCellTwoOsc.ode.setdb <-> the paper's Fig. 2b, +![fig 2b](./fig2b.png) + +OneCellTwoOsc.ode.setsdb <-> the paper's Fig. 2c +![fig 2c](./fig2c.png) + +--- + +2025-07-09: Converted README to Markdown. diff --git a/readme.html b/readme.html deleted file mode 100644 index 31c5938..0000000 --- a/readme.html +++ /dev/null @@ -1,34 +0,0 @@ -
-This is the readme for the model associated with the paper
-
-Park C, Rubin JE (2013) Cooperation of intrinsic bursting and calcium
-oscillations underlying activity patterns of model pre-Botzinger
-complex neurons. J Comput Neurosci 34:345-66
-
-This model written in XPP was implemented by Jon Rubin and Choongseok
-Park.
-
-XPP is freely available at http://www.math.pitt.edu/~bard/xpp/xpp.html
-
-To run the model in it's default setting start with a command like
-(depends on your platform):
-
-xppaut OneCellTwoOsc.ode
-
-Once XPP starts select Initalconds -> (G)o to see an figure like this:
-
-screenshot
-
-Inside XPP, use File -> Read set with the included set files to get
-certain dynamics from the paper:
-
-OneCellTwoOsc.ode.setsb <-> the paper's Fig. 2a,
-fig 2a
-
-OneCellTwoOsc.ode.setdb <-> the paper's Fig. 2b,
-fig 2b
-
-OneCellTwoOsc.ode.setsdb <-> the paper's Fig. 2c
-fig 2c
-
-