From a221f74a13c749e61231dd0d35826623c8067dc0 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Apr 2024 21:44:59 +0000 Subject: [PATCH 01/86] Bump peter-evans/create-or-update-comment from 3 to 4 Bumps [peter-evans/create-or-update-comment](https://github.com/peter-evans/create-or-update-comment) from 3 to 4. - [Release notes](https://github.com/peter-evans/create-or-update-comment/releases) - [Commits](https://github.com/peter-evans/create-or-update-comment/compare/v3...v4) --- updated-dependencies: - dependency-name: peter-evans/create-or-update-comment dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/issue_to_jira.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/issue_to_jira.yml b/.github/workflows/issue_to_jira.yml index a6db477..18e9d20 100644 --- a/.github/workflows/issue_to_jira.yml +++ b/.github/workflows/issue_to_jira.yml @@ -28,7 +28,7 @@ jobs: # Additional fields in JSON format fields: '{"components": [{"name": "param-sweeps"}]}' - name: Post JIRA link - uses: peter-evans/create-or-update-comment@v3 + uses: peter-evans/create-or-update-comment@v4 with: # The number of the issue or pull request in which to create a comment. issue-number: ${{ github.event.issue.number }} From 7bb790cbd3f47ec3df73b0066e5e2c9c40e85219 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Apr 2024 21:45:04 +0000 Subject: [PATCH 02/86] Bump codecov/codecov-action from 3 to 4 Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3 to 4. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/v3...v4) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/pytest-windows.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pytest-windows.yml b/.github/workflows/pytest-windows.yml index d51d001..ff6f61c 100644 --- a/.github/workflows/pytest-windows.yml +++ b/.github/workflows/pytest-windows.yml @@ -61,6 +61,6 @@ jobs: run: poetry run pytest --cov-report=xml --cov=param_sweeps --cov-branch --cov-fail-under=85 - name: Codecov if: ${{ success() && matrix.python_ver == '3.10' }} - uses: codecov/codecov-action@v3 + uses: codecov/codecov-action@v4 with: name: GitHub From 159236a0b4c565fe56d41729a192aca42f9b42d8 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Apr 2024 21:45:11 +0000 Subject: [PATCH 03/86] Bump actions/cache from 3 to 4 Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/pytest-unix-os.yml | 2 +- .github/workflows/pytest-windows.yml | 2 +- .github/workflows/static-analysis.yml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/pytest-unix-os.yml b/.github/workflows/pytest-unix-os.yml index c260dec..2fd8e06 100644 --- a/.github/workflows/pytest-unix-os.yml +++ b/.github/workflows/pytest-unix-os.yml @@ -45,7 +45,7 @@ jobs: curl -sSL https://install.python-poetry.org | POETRY_HOME=$HOME/.poetry python - echo "$HOME/.poetry/bin" >> $GITHUB_PATH - name: Set up cache - uses: actions/cache@v3 + uses: actions/cache@v4 id: cache env: # Increase this value to reset cache if poetry.lock has not changed diff --git a/.github/workflows/pytest-windows.yml b/.github/workflows/pytest-windows.yml index d51d001..c1aa2c9 100644 --- a/.github/workflows/pytest-windows.yml +++ b/.github/workflows/pytest-windows.yml @@ -44,7 +44,7 @@ jobs: curl -sSL https://install.python-poetry.org | POETRY_HOME=$HOME/.poetry python - echo "$HOME/.poetry/bin" >> $GITHUB_PATH - name: Set up cache - uses: actions/cache@v3 + uses: actions/cache@v4 id: cache env: # Increase this value to reset cache if poetry.lock has not changed diff --git a/.github/workflows/static-analysis.yml b/.github/workflows/static-analysis.yml index 5767e35..0fdbb10 100644 --- a/.github/workflows/static-analysis.yml +++ b/.github/workflows/static-analysis.yml @@ -38,7 +38,7 @@ jobs: curl -sSL https://install.python-poetry.org | POETRY_HOME=$HOME/.poetry python - echo "$HOME/.poetry/bin" >> $GITHUB_PATH - name: Set up cache - uses: actions/cache@v3 + uses: actions/cache@v4 id: cache env: # Increase this value to reset cache if poetry.lock has not changed From ee33debb1388e534b850658f1b0f8464e4efde1f Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Apr 2024 21:45:17 +0000 Subject: [PATCH 04/86] Bump actions/setup-python from 4 to 5 Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/v4...v5) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/pytest-unix-os.yml | 2 +- .github/workflows/pytest-windows.yml | 2 +- .github/workflows/static-analysis.yml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/pytest-unix-os.yml b/.github/workflows/pytest-unix-os.yml index c260dec..f6eb152 100644 --- a/.github/workflows/pytest-unix-os.yml +++ b/.github/workflows/pytest-unix-os.yml @@ -34,7 +34,7 @@ jobs: steps: - uses: actions/checkout@v4 - name: Set up Python version - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: ${{ matrix.python_ver }} - name: Get full Python version diff --git a/.github/workflows/pytest-windows.yml b/.github/workflows/pytest-windows.yml index d51d001..9b050ad 100644 --- a/.github/workflows/pytest-windows.yml +++ b/.github/workflows/pytest-windows.yml @@ -33,7 +33,7 @@ jobs: steps: - uses: actions/checkout@v4 - name: Set up Python version - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: ${{ matrix.python_ver }} - name: Get full Python version diff --git a/.github/workflows/static-analysis.yml b/.github/workflows/static-analysis.yml index 5767e35..d400946 100644 --- a/.github/workflows/static-analysis.yml +++ b/.github/workflows/static-analysis.yml @@ -26,7 +26,7 @@ jobs: steps: - uses: actions/checkout@v4 - name: Set up Python version - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: 3.9 - name: Get full Python version From b12088789861158b59fcf44a301f946f0407769c Mon Sep 17 00:00:00 2001 From: dominiquef Date: Wed, 3 Apr 2024 13:12:17 -0700 Subject: [PATCH 05/86] Future release version 0.1.8 --- param_sweeps/__init__.py | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/param_sweeps/__init__.py b/param_sweeps/__init__.py index 38b4fc7..99fa676 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -6,4 +6,4 @@ # (see LICENSE file at the root of this source code package). -__version__ = "0.1.7-alpha.1" +__version__ = "0.1.8" diff --git a/pyproject.toml b/pyproject.toml index 8fa891a..993d48e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "param-sweeps" -version = "0.1.7-alpha.1" +version = "0.1.8" description = "Parameter sweeper for ui.json powered applications" authors = ["Mira Geoscience "] From 412f177cbdcdb63477b77908b2b32aec42bb2a08 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 29 Apr 2024 17:43:25 +0000 Subject: [PATCH 06/86] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/psf/black: 24.3.0 → 24.4.2](https://github.com/psf/black/compare/24.3.0...24.4.2) - [github.com/asottile/pyupgrade: v3.15.1 → v3.15.2](https://github.com/asottile/pyupgrade/compare/v3.15.1...v3.15.2) - [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.9.0...v1.10.0) - [github.com/codingjoe/relint: 3.1.0 → 3.1.1](https://github.com/codingjoe/relint/compare/3.1.0...3.1.1) - [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0) --- .pre-commit-config.yaml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 3ec11a7..7cf24aa 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -10,7 +10,7 @@ ci: repos: - repo: https://github.com/psf/black - rev: 24.3.0 + rev: 24.4.2 hooks: - id: black types: [text] @@ -35,21 +35,21 @@ repos: types: [text] types_or: [python, pyi] - repo: https://github.com/asottile/pyupgrade - rev: v3.15.1 + rev: v3.15.2 hooks: - id: pyupgrade args: [--py38-plus] types: [text] types_or: [python, pyi] - repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.9.0 + rev: v1.10.0 hooks: - id: mypy additional_dependencies: [types-toml] args: [--ignore-missing-imports, --scripts-are-modules, --show-error-context, --show-column-numbers] - repo: https://github.com/codingjoe/relint - rev: 3.1.0 + rev: 3.1.1 hooks: - id: relint args: [-W] # to fail on warnings @@ -78,7 +78,7 @@ repos: types: [text] types_or: [python, pyi] - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.5.0 + rev: v4.6.0 hooks: - id: trailing-whitespace exclude: \.mdj$ From ab7a64bb40be6af3f23194370d16c8a1297204eb Mon Sep 17 00:00:00 2001 From: dominiquef Date: Wed, 22 May 2024 09:47:45 -0700 Subject: [PATCH 07/86] Update reqs --- poetry.lock | 550 ++++++++++++++++++------------------------------- pyproject.toml | 2 +- 2 files changed, 199 insertions(+), 353 deletions(-) diff --git a/poetry.lock b/poetry.lock index 61eb01f..105c71e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,20 +1,18 @@ -# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. 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python_ver: ['3.10'] defaults: run: shell: bash From c8c780fe00f6c5546f5d5610947c96bb5024f179 Mon Sep 17 00:00:00 2001 From: dominiquef Date: Wed, 22 May 2024 10:08:48 -0700 Subject: [PATCH 09/86] Remove auto-flake --- .pre-commit-config.yaml | 6 ------ 1 file changed, 6 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 3ec11a7..0d39c7c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -22,12 +22,6 @@ repos: additional_dependencies: [toml] # to read config from pyproject.toml types: [text] types_or: [python, pyi] -- repo: https://github.com/humitos/mirrors-autoflake - rev: v1.1 - hooks: - - id: autoflake - types: [text] - types_or: [python, pyi] - repo: https://github.com/PyCQA/flake8 rev: 7.0.0 hooks: From 59c78d6bbca8a3e91e52d4a1d9adcbd6c5bac004 Mon Sep 17 00:00:00 2001 From: dominiquef Date: Wed, 22 May 2024 10:24:40 -0700 Subject: [PATCH 10/86] Use url for geoh5py --- poetry.lock | 19 +++++++++---------- pyproject.toml | 2 +- 2 files changed, 10 insertions(+), 11 deletions(-) diff --git a/poetry.lock b/poetry.lock index 105c71e..d3de37c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -127,19 +127,18 @@ version = "0.10.0-alpha.1" description = "Python API for geoh5, an open file format for geoscientific data" optional = false python-versions = "^3.9,<3.11" -files = [] -develop = false +files = [ + {file = "develop.zip", hash = "sha256:992f7daa63390220970d47055250cfb9424cbdf61b358175e68b7d426866a8f0"}, +] [package.dependencies] -h5py = "^3.2.1" -numpy = "!=1.19.4, ~1.23.5" -Pillow = "~10.1.0" +h5py = ">=3.2.1,<4.0.0" +numpy = ">=1.23.5,<1.24.0" +Pillow = ">=10.1.0,<10.2.0" [package.source] -type = "git" -url = "https://github.com/MiraGeoscience/geoh5py.git" -reference = "develop" -resolved_reference = "890d647ae92eba047e47820ead98e8d006568f94" +type = "url" +url = "https://github.com/MiraGeoscience/geoh5py/archive/refs/heads/develop.zip" [[package]] name = "h5py" @@ -457,4 +456,4 @@ files = [ [metadata] 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insertions(+), 2 deletions(-) diff --git a/param_sweeps/__init__.py b/param_sweeps/__init__.py index 99fa676..f8cd94f 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -6,4 +6,4 @@ # (see LICENSE file at the root of this source code package). -__version__ = "0.1.8" +__version__ = "0.1.8-alpha.1" diff --git a/pyproject.toml b/pyproject.toml index d180987..72843eb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "param-sweeps" -version = "0.1.8" +version = "0.1.8-alpha.1" description = "Parameter sweeper for ui.json powered applications" license = "MIT" From 3e69137ae4e986f6fed8e209e60a080e96f0edd7 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Fri, 28 Jun 2024 21:28:19 -0400 Subject: [PATCH 12/86] fix typo on commented line --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 72843eb..d4d6468 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ 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python = "^3.10,<3.11" -numpy = "~1.23.5" # also in geoh5py +numpy = "~1.26.0" # also in geoh5py ## dependencies from Git repositories #------------------------------------ -#geoh5py = {version = "~0.9.0", allow-prereleases = true} +#geoh5py = {version = "~0.10.0-alpha.1", allow-prereleases = true} #geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", branch = "develop"} geoh5py = {url = "https://github.com/MiraGeoscience/geoh5py/archive/refs/heads/develop.zip"} #geoh5py = {url = "http://localhost:8888/geoh5py.tar.gz"} From 3dff47b565352dcf3c5f3587bad5d7d946c45015 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Fri, 28 Jun 2024 21:54:14 -0400 Subject: [PATCH 14/86] point to git revision for geoh5py --- poetry.lock | 21 +++++++++++---------- pyproject.toml | 3 +-- 2 files changed, 12 insertions(+), 12 deletions(-) diff --git a/poetry.lock b/poetry.lock index fde1dca..46ea5c9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -126,19 +126,20 @@ name = "geoh5py" version = 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"c569500749ca03b30408b6499abe65e75a8d231453aa2af397481a81314a6181" +content-hash = "fa6f3a092eeefec5ca8b6768084c58cf56fbea32452bfab6f0ea5f58a04e4df9" diff --git a/pyproject.toml b/pyproject.toml index 0a6c0b8..b3c41c9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -43,8 +43,7 @@ numpy = "~1.26.0" # also in geoh5py ## dependencies from Git repositories #------------------------------------ #geoh5py = {version = "~0.10.0-alpha.1", allow-prereleases = true} -#geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", branch = "develop"} -geoh5py = {url = "https://github.com/MiraGeoscience/geoh5py/archive/refs/heads/develop.zip"} +geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "develop"} #geoh5py = {url = "http://localhost:8888/geoh5py.tar.gz"} #geoh5py = {path = "../geoh5py", develop = true} From 02fd8461032c1c912866081ebb39ce6a877ff5a0 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Sat, 29 Jun 2024 01:36:09 -0400 Subject: [PATCH 15/86] also run tests on Python 3.11 and 3.12 --- .github/workflows/pytest-unix-os.yml | 2 +- .github/workflows/pytest-windows.yml | 2 +- .github/workflows/static-analysis.yml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/pytest-unix-os.yml b/.github/workflows/pytest-unix-os.yml index 8d66f2a..311df1e 100644 --- a/.github/workflows/pytest-unix-os.yml +++ b/.github/workflows/pytest-unix-os.yml @@ -25,7 +25,7 @@ jobs: fail-fast: false matrix: os: [ubuntu-latest] - python_ver: ['3.10'] + python_ver: ['3.10', '3.11', '3.12'] defaults: run: shell: bash diff --git a/.github/workflows/pytest-windows.yml b/.github/workflows/pytest-windows.yml index b084f23..1f177e0 100644 --- a/.github/workflows/pytest-windows.yml +++ b/.github/workflows/pytest-windows.yml @@ -24,7 +24,7 @@ jobs: strategy: fail-fast: false matrix: - python_ver: ['3.10'] + python_ver: ['3.10', '3.11', '3.12'] defaults: run: shell: bash diff --git a/.github/workflows/static-analysis.yml b/.github/workflows/static-analysis.yml index 1157e93..5fe308f 100644 --- a/.github/workflows/static-analysis.yml +++ b/.github/workflows/static-analysis.yml @@ -30,7 +30,7 @@ jobs: - name: Set up Python version uses: actions/setup-python@v5 with: - python-version: 3.9 + python-version: "3.10" - name: Get full Python version id: full-python-version shell: bash From 12b49680f98fdbb2031af46961827fe19485e884 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Sat, 29 Jun 2024 01:41:48 -0400 Subject: [PATCH 16/86] allow python 3.12 (but no more 3.9) --- poetry.lock | 10 +++++++--- pyproject.toml | 2 +- 2 files changed, 8 insertions(+), 4 deletions(-) diff --git a/poetry.lock b/poetry.lock index 46ea5c9..a585cb3 100644 --- a/poetry.lock +++ b/poetry.lock @@ -412,7 +412,11 @@ files = [ [package.dependencies] astroid = ">=3.1.0,<=3.2.0-dev0" colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""} -dill = {version = ">=0.2", markers = "python_version < \"3.11\""} +dill = [ + {version = ">=0.2", markers = "python_version < \"3.11\""}, + {version = ">=0.3.7", markers = "python_version >= \"3.12\""}, + {version = ">=0.3.6", markers = "python_version >= \"3.11\" and python_version < \"3.12\""}, +] isort = ">=4.2.5,<5.13.0 || >5.13.0,<6" mccabe = ">=0.6,<0.8" platformdirs = ">=2.2.0" @@ -498,5 +502,5 @@ files = [ [metadata] lock-version = "2.0" -python-versions = "^3.10,<3.11" -content-hash = "fa6f3a092eeefec5ca8b6768084c58cf56fbea32452bfab6f0ea5f58a04e4df9" +python-versions = "^3.10" +content-hash = "d32a33f2f29561e6331fe86f71234b710a9c8be0814dee21c2d40404cce7abb5" diff --git a/pyproject.toml b/pyproject.toml index b3c41c9..eb2747e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -36,7 +36,7 @@ include = [ ] [tool.poetry.dependencies] -python = "^3.10,<3.11" +python = "^3.10" numpy = "~1.26.0" # also in geoh5py From 4f2881f151e9a00384e489b5d391d5a126261b09 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Sat, 29 Jun 2024 01:44:20 -0400 Subject: [PATCH 17/86] pre-commit autoupdate --- .pre-commit-config.yaml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 5292167..f5cfe14 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -31,20 +31,20 @@ repos: hooks: - id: black - repo: https://github.com/PyCQA/flake8 - rev: 7.0.0 + rev: 7.1.0 hooks: - id: flake8 - repo: https://github.com/asottile/pyupgrade - rev: v3.15.2 + rev: v3.16.0 hooks: - id: pyupgrade args: [--py310-plus] - repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.10.0 + rev: v1.10.1 hooks: - id: mypy additional_dependencies: [ - numpy==1.26.*, # pre-commit CI does not provide numpy 1.23.* + numpy==1.26.*, pydantic==2.5.*, tomli, # to read config from pyproject.toml types-toml, @@ -82,7 +82,7 @@ repos: entry: python devtools/git_message_hook.py --check language: python - repo: https://github.com/codespell-project/codespell - rev: v2.2.6 + rev: v2.3.0 hooks: - id: codespell exclude: 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{file = "pylint-3.2.5-py3-none-any.whl", hash = "sha256:32cd6c042b5004b8e857d727708720c54a676d1e22917cf1a2df9b4d4868abd6"}, + {file = "pylint-3.2.5.tar.gz", hash = "sha256:e9b7171e242dcc6ebd0aaa7540481d1a72860748a0a7816b8fe6cf6c80a6fe7e"}, ] [package.dependencies] -astroid = ">=3.1.0,<=3.2.0-dev0" +astroid = ">=3.2.2,<=3.3.0-dev0" colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""} dill = [ {version = ">=0.2", markers = "python_version < \"3.11\""}, @@ -422,6 +417,7 @@ mccabe = ">=0.6,<0.8" platformdirs = ">=2.2.0" tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} tomlkit = ">=0.10.1" +typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""} [package.extras] spelling = ["pyenchant (>=3.2,<4.0)"] @@ -429,13 +425,13 @@ testutils = ["gitpython (>3)"] [[package]] name = "pytest" -version = "8.1.1" +version = "8.2.2" description = "pytest: simple powerful testing with Python" optional = false python-versions = ">=3.8" files = [ - {file = "pytest-8.1.1-py3-none-any.whl", hash = "sha256:2a8386cfc11fa9d2c50ee7b2a57e7d898ef90470a7a34c4b949ff59662bb78b7"}, - {file = "pytest-8.1.1.tar.gz", hash = "sha256:ac978141a75948948817d360297b7aae0fcb9d6ff6bc9ec6d514b85d5a65c044"}, + {file = "pytest-8.2.2-py3-none-any.whl", hash = "sha256:c434598117762e2bd304e526244f67bf66bbd7b5d6cf22138be51ff661980343"}, + {file = "pytest-8.2.2.tar.gz", hash = "sha256:de4bb8104e201939ccdc688b27a89a7be2079b22e2bd2b07f806b6ba71117977"}, ] [package.dependencies] @@ -443,11 +439,11 @@ colorama = {version = "*", markers = "sys_platform == \"win32\""} exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""} iniconfig = "*" packaging = "*" -pluggy = ">=1.4,<2.0" +pluggy = ">=1.5,<2.0" tomli = {version = ">=1", markers = "python_version < \"3.11\""} [package.extras] -testing = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"] +dev = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"] [[package]] name = "pytest-cov" @@ -480,27 +476,27 @@ files = [ [[package]] name = "tomlkit" -version = "0.12.4" +version = "0.12.5" description = "Style preserving TOML library" optional = false python-versions = ">=3.7" files = [ - {file = "tomlkit-0.12.4-py3-none-any.whl", hash = "sha256:5cd82d48a3dd89dee1f9d64420aa20ae65cfbd00668d6f094d7578a78efbb77b"}, - {file = "tomlkit-0.12.4.tar.gz", hash = "sha256:7ca1cfc12232806517a8515047ba66a19369e71edf2439d0f5824f91032b6cc3"}, + {file = "tomlkit-0.12.5-py3-none-any.whl", hash = "sha256:af914f5a9c59ed9d0762c7b64d3b5d5df007448eb9cd2edc8a46b1eafead172f"}, + {file = "tomlkit-0.12.5.tar.gz", hash = "sha256:eef34fba39834d4d6b73c9ba7f3e4d1c417a4e56f89a7e96e090dd0d24b8fb3c"}, ] [[package]] name = "typing-extensions" -version = "4.11.0" +version = "4.12.2" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" files = [ - {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"}, - {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"}, + {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"}, + {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"}, ] [metadata] lock-version = "2.0" -python-versions = "^3.10" -content-hash = "d32a33f2f29561e6331fe86f71234b710a9c8be0814dee21c2d40404cce7abb5" +python-versions = "^3.9" +content-hash = "7f0a54b9c359730c3b71bf57254bf91089511b3af102aef83416513c2bf59621" diff --git a/pyproject.toml b/pyproject.toml index eb2747e..3e7ff36 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -36,14 +36,14 @@ include = [ ] [tool.poetry.dependencies] -python = "^3.10" +python = "^3.9" numpy = "~1.26.0" # also in geoh5py ## dependencies from Git repositories #------------------------------------ -#geoh5py = {version = "~0.10.0-alpha.1", allow-prereleases = true} -geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "develop"} +geoh5py = {version = ">=0.9.1, <0.11", allow-prereleases = true} +#geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "develop"} #geoh5py = {url = "http://localhost:8888/geoh5py.tar.gz"} #geoh5py = {path = "../geoh5py", develop = true} From 2b2e409d6ec970318562a27f927f7ef9ffacd814 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Thu, 4 Jul 2024 17:17:06 -0400 Subject: [PATCH 19/86] allow python3.9 --- .github/workflows/pytest-unix-os.yml | 2 +- .github/workflows/pytest-windows.yml | 2 +- .pre-commit-config.yaml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/pytest-unix-os.yml b/.github/workflows/pytest-unix-os.yml index 311df1e..98e6cc5 100644 --- a/.github/workflows/pytest-unix-os.yml +++ b/.github/workflows/pytest-unix-os.yml @@ -25,7 +25,7 @@ jobs: fail-fast: false matrix: os: [ubuntu-latest] - python_ver: ['3.10', '3.11', '3.12'] + python_ver: ['3.9', '3.10', '3.11', '3.12'] defaults: run: shell: bash diff --git a/.github/workflows/pytest-windows.yml b/.github/workflows/pytest-windows.yml index 1f177e0..0dd036f 100644 --- a/.github/workflows/pytest-windows.yml +++ b/.github/workflows/pytest-windows.yml @@ -24,7 +24,7 @@ jobs: strategy: fail-fast: false matrix: - python_ver: ['3.10', '3.11', '3.12'] + python_ver: ['3.9', '3.10', '3.11', '3.12'] defaults: run: shell: bash diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index f5cfe14..7dde003 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -38,7 +38,7 @@ repos: rev: v3.16.0 hooks: - id: pyupgrade - args: [--py310-plus] + args: [--py39-plus] - repo: https://github.com/pre-commit/mirrors-mypy rev: v1.10.1 hooks: From caf4da2f3af80075b484e06e0968a6c8502a3bd9 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Thu, 4 Jul 2024 21:54:53 -0400 Subject: [PATCH 20/86] no more use of mypy pydantic plugin --- .pre-commit-config.yaml | 1 - 1 file changed, 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 7dde003..4f3347c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -45,7 +45,6 @@ repos: - id: mypy additional_dependencies: [ numpy==1.26.*, - pydantic==2.5.*, tomli, # to read config from pyproject.toml types-toml, ] From ed020ede8bd81e16d85dd0b89265472f88fb1a72 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Thu, 4 Jul 2024 21:54:53 -0400 Subject: [PATCH 21/86] no more use of mypy pydantic plugin --- .pre-commit-config.yaml | 1 - 1 file changed, 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 7dde003..4f3347c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -45,7 +45,6 @@ repos: - id: mypy additional_dependencies: [ numpy==1.26.*, - pydantic==2.5.*, tomli, # to read config from pyproject.toml types-toml, ] From 30834a14690e461211cfb39a2921cdab4bd7cf94 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Fri, 5 Jul 2024 01:44:41 -0400 Subject: [PATCH 22/86] GEOPY-1610: static analysis on Python 3.9 --- .github/workflows/static-analysis.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/static-analysis.yml b/.github/workflows/static-analysis.yml index 5fe308f..b9282f1 100644 --- a/.github/workflows/static-analysis.yml +++ b/.github/workflows/static-analysis.yml @@ -30,7 +30,7 @@ jobs: - name: Set up Python version uses: actions/setup-python@v5 with: - python-version: "3.10" + python-version: '3.9' - name: Get full Python version id: full-python-version shell: bash From 24e15f3ecd3b86851087a395966cbf828ce6570f Mon Sep 17 00:00:00 2001 From: sebhmg Date: Fri, 12 Jul 2024 15:24:58 -0400 Subject: [PATCH 23/86] bump version to 0.2.0-alpha.1 --- param_sweeps/__init__.py | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/param_sweeps/__init__.py b/param_sweeps/__init__.py index f8cd94f..00b8f29 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -6,4 +6,4 @@ # (see LICENSE file at the root of this source code package). -__version__ = "0.1.8-alpha.1" +__version__ = "0.2.0-alpha.1" diff --git a/pyproject.toml b/pyproject.toml index 3e7ff36..5e59636 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "param-sweeps" -version = "0.1.8-alpha.1" +version = "0.2.0-alpha.1" description = "Parameter sweeper for ui.json powered applications" license = "MIT" From a3c6422aa580e0a5bf4cce0d7301a72fbc0ca23e Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Thu, 18 Jul 2024 16:19:51 -0400 Subject: [PATCH 24/86] [GEOPY-1233] Use reusable github workflows --- .github/workflows/issue_to_jira.yml | 34 ++--------- .github/workflows/pr_add_jira_summary.yml | 60 +------------------ .github/workflows/pytest-unix-os.yml | 64 --------------------- .github/workflows/pytest-windows.yml | 70 ----------------------- .github/workflows/python_analysis.yml | 45 +++++++++++++++ .github/workflows/static-analysis.yml | 66 --------------------- 6 files changed, 53 insertions(+), 286 deletions(-) delete mode 100644 .github/workflows/pytest-unix-os.yml delete mode 100644 .github/workflows/pytest-windows.yml create mode 100644 .github/workflows/python_analysis.yml delete mode 100644 .github/workflows/static-analysis.yml diff --git a/.github/workflows/issue_to_jira.yml b/.github/workflows/issue_to_jira.yml index 18e9d20..2818e29 100644 --- a/.github/workflows/issue_to_jira.yml +++ b/.github/workflows/issue_to_jira.yml @@ -1,5 +1,3 @@ -# This workflow will create a JIRA issue upon creation of a GitHub issue - name: Create JIRA issue on: @@ -7,30 +5,8 @@ on: types: [opened] jobs: - new_jira_issue: - runs-on: ubuntu-latest - - steps: - - name: JIRA Login - uses: atlassian/gajira-login@v3.0.1 - env: - JIRA_BASE_URL: ${{ secrets.JIRA_BASE_URL }} - JIRA_USER_EMAIL: ${{ secrets.JIRA_USER_EMAIL }} - JIRA_API_TOKEN: ${{ secrets.JIRA_API_TOKEN }} - - name: Jira Create issue - id: create_jira_issue - uses: atlassian/gajira-create@v3.0.1 - with: - project: GEOPY - issuetype: Story - summary: ${{ github.event.issue.title }} - description: "_from [GitHub issue #${{ github.event.issue.number }}|${{ github.event.issue.html_url }}]_" - # Additional fields in JSON format - fields: '{"components": [{"name": "param-sweeps"}]}' - - name: Post JIRA link - uses: peter-evans/create-or-update-comment@v4 - with: - # The number of the issue or pull request in which to create a comment. - issue-number: ${{ github.event.issue.number }} - # The comment body. - body: "JIRA issue [${{ steps.create_jira_issue.outputs.issue }}] was created." + call-workflow-create-jira-issue: + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@main + secrets: inherit + with: + project_key: 'GEOPY' diff --git a/.github/workflows/pr_add_jira_summary.yml b/.github/workflows/pr_add_jira_summary.yml index f0c8a8d..794bf3f 100644 --- a/.github/workflows/pr_add_jira_summary.yml +++ b/.github/workflows/pr_add_jira_summary.yml @@ -1,6 +1,3 @@ -# This workflow will comment the PR with the JIRA issue summary -# if a JIRA issue number is detected in the branch name or title - name: Add JIRA issue summary on: @@ -8,57 +5,6 @@ on: types: [opened] jobs: - add_jira_summary: - runs-on: ubuntu-latest - - steps: - - name: Find JIRA issue key - id: find_jira_key - env: - HEAD_REF: ${{ github.head_ref}} - PR_TITLE: ${{ github.event.pull_request.title }} - run: > - echo $HEAD_REF $PR_TITLE - | echo "issue_key=$( - grep -osi "\b\(GA\|GEOPY\|DEVOPS\)[ #-]*[0-9]\+" - | head -n1 - | sed -E "s/([A-Z]+)[-# ]*([0-9]+)/\1-\2/i" - | tr [:lower:] [:upper:] - )" - >> $GITHUB_OUTPUT - - name: Get JIRA summary - id: get_jira_summary - if: ${{ steps.find_jira_key.outputs.issue_key }} - env: - JIRA_BASE_URL: ${{ secrets.JIRA_BASE_URL }} - JIRA_BASIC_AUTH: ${{ secrets.JIRA_BASIC_AUTH }} - run: > - curl -sS -X GET - -H "Authorization: Basic $JIRA_BASIC_AUTH" - -H "Content-Type: application/json" - "$JIRA_BASE_URL/rest/api/2/issue/${{ steps.find_jira_key.outputs.issue_key }}" - | echo "summary=$(jq -r '.fields.summary // empty')" >> $GITHUB_OUTPUT - - name: Extract PR title - id: get_pr_title - env: - PR_TITLE: ${{ github.event.pull_request.title }} - run: | - echo "text=$(echo $PR_TITLE | sed -E "s/^\s*[?[A-Z]+[-# ]*[0-9]+]?[-: ]*(.*)/\1/i")" >> $GITHUB_OUTPUT - - name: Add comment - if: ${{ steps.find_jira_key.outputs.issue_key }} - env: - ISSUE_SUMMARY: ${{ steps.get_jira_summary.outputs.summary }} - TITLE_TEXT: ${{ steps.get_pr_title.outputs.text }} - PR_BODY: ${{ github.event.pull_request.body }} - run: > - jq - --arg ISSUE_ID "${{ steps.find_jira_key.outputs.issue_key }}" - --arg ISSUE_SUMMARY "$(cat <<< $ISSUE_SUMMARY)" - --arg TITLE_TEXT "$(cat <<< ${TITLE_TEXT:-$ISSUE_SUMMARY})" - --arg PR_BODY "$(cat <<< $PR_BODY)" - -c '{"title": ($ISSUE_ID + ": " + $TITLE_TEXT), "body": ("**" + $ISSUE_ID + " - " + $ISSUE_SUMMARY + "**\n" + $PR_BODY)}' <<< {} - | curl -sS -X POST -d @- - -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" - -H "Content-Type: application/json" - "$GITHUB_API_URL/repos/$GITHUB_REPOSITORY/pulls/${{ github.event.pull_request.number }}" - > /dev/null + call-workflow-add-jira-issue-summary: + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-pr_add_jira_summary.yml@main + secrets: inherit diff --git a/.github/workflows/pytest-unix-os.yml b/.github/workflows/pytest-unix-os.yml deleted file mode 100644 index 98e6cc5..0000000 --- a/.github/workflows/pytest-unix-os.yml +++ /dev/null @@ -1,64 +0,0 @@ -name: pytest on Unix OS - -on: - pull_request: - types: [opened, synchronize, reopened, ready_for_review] - branches: - - develop - - main - - release/** - - feature/** - - hotfix/** - push: - branches: - - develop - - main - - release/** - - feature/** - - hotfix/** - -jobs: - pytest: - name: pytest - if: github.event_name != 'pull_request' || github.event.pull_request.draft == false - strategy: - fail-fast: false - matrix: - os: [ubuntu-latest] - python_ver: ['3.9', '3.10', '3.11', '3.12'] - defaults: - run: - shell: bash - runs-on: ${{ matrix.os }} - env: - POETRY_VIRTUALENVS_CREATE: true - POETRY_VIRTUALENVS_IN_PROJECT: true - steps: - - uses: actions/checkout@v4 - - name: Set up Python version - uses: actions/setup-python@v5 - with: - python-version: ${{ matrix.python_ver }} - - name: Get full Python version - id: full-python-version - run: echo ::set-output name=version::$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") - - name: Install Poetry - run: | - curl -sSL https://install.python-poetry.org | POETRY_HOME=$HOME/.poetry python - - echo "$HOME/.poetry/bin" >> $GITHUB_PATH - - name: Set up cache - uses: actions/cache@v4 - id: cache - env: - # Increase this value to reset cache if poetry.lock has not changed - CACHE_NUMBER: 1 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('**/poetry.lock') }}-{{ env.CACHE_NUMBER }} - - name: Ensure cache is healthy - if: steps.cache.outputs.cache-hit == 'true' - run: timeout 10s poetry run pip --version || rm -rf .venv - - name: Install dependencies - run: poetry install -vvv - - name: pytest - run: poetry run pytest --cov --cov-report=xml diff --git a/.github/workflows/pytest-windows.yml b/.github/workflows/pytest-windows.yml deleted file mode 100644 index 0dd036f..0000000 --- a/.github/workflows/pytest-windows.yml +++ /dev/null @@ -1,70 +0,0 @@ -name: pytest on Windows - -on: - pull_request: - types: [opened, synchronize, reopened, ready_for_review] - branches: - - develop - - main - - release/** - - feature/** - - hotfix/** - push: - branches: - - develop - - main - - release/** - - feature/** - - hotfix/** - -jobs: - pytest: - name: pytest (Windows) - if: github.event_name != 'pull_request' || github.event.pull_request.draft == false - strategy: - fail-fast: false - matrix: - python_ver: ['3.9', '3.10', '3.11', '3.12'] - defaults: - run: - shell: bash - runs-on: windows-latest - env: - POETRY_VIRTUALENVS_CREATE: true - POETRY_VIRTUALENVS_IN_PROJECT: true - steps: - - uses: actions/checkout@v4 - - name: Set up Python version - uses: actions/setup-python@v5 - with: - python-version: ${{ matrix.python_ver }} - - name: Get full Python version - id: full-python-version - run: echo ::set-output name=version::$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") - - name: Install Poetry - run: | - curl -sSL https://install.python-poetry.org | POETRY_HOME=$HOME/.poetry python - - echo "$HOME/.poetry/bin" >> $GITHUB_PATH - - name: Set up cache - uses: actions/cache@v4 - id: cache - env: - # Increase this value to reset cache if poetry.lock has not changed - CACHE_NUMBER: 1 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('**/poetry.lock') }}-{{ env.CACHE_NUMBER }} - - name: Ensure cache is healthy - if: steps.cache.outputs.cache-hit == 'true' - run: timeout 10s poetry run pip --version || rm -rf .venv - - name: Install dependencies - run: poetry install -vvv - - name: pytest - run: poetry run pytest --cov --cov-report=xml - - name: Codecov - if: ${{ success() && matrix.python_ver == '3.10' }} - uses: codecov/codecov-action@v4 - with: - name: GitHub - fail_ci_if_error: true - token: ${{ secrets.CODECOV_TOKEN }} diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml new file mode 100644 index 0000000..2f0c8ec --- /dev/null +++ b/.github/workflows/python_analysis.yml @@ -0,0 +1,45 @@ +name: Python analysis + +on: + pull_request: + types: [opened, synchronize, reopened, ready_for_review] + branches: + - develop + - main + - release/** + - feature/** + - hotfix/** + push: + branches: + - develop + - main + - release/** + - feature/** + - hotfix/** + +concurrency: + group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} + cancel-in-progress: true + +jobs: + call-workflow-static-analysis: + name: Static analysis + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@main + with: + app_name: 'param_sweeps' + python_vers: '3.9' + call-workflow-pytest-on-windows: + name: Pytest on Windows + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@main + with: + python_ver: '["3.9", "3.10", "3.11", "3.12"]' + cache_number: 1 + codecov_reference_python_ver: '3.10' + secrets: inherit + call-workflow-pytest-on-unix-os: + name: Pytest on Unix OS + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@main + with: + python_ver: '["3.9", "3.10", "3.11", "3.12"]' + os: '["ubuntu-latest"]' + cache_number: 1 diff --git a/.github/workflows/static-analysis.yml b/.github/workflows/static-analysis.yml deleted file mode 100644 index b9282f1..0000000 --- a/.github/workflows/static-analysis.yml +++ /dev/null @@ -1,66 +0,0 @@ -name: static analysis - -on: - pull_request: - types: [opened, synchronize, reopened, ready_for_review] - branches: - - develop - - main - - release/** - - feature/** - - hotfix/** - push: - branches: - - develop - - main - - release/** - - feature/** - - hotfix/** - -jobs: - pylint: - name: pylint - if: github.event_name != 'pull_request' || github.event.pull_request.draft == false - runs-on: ubuntu-latest - env: - POETRY_VIRTUALENVS_CREATE: true - POETRY_VIRTUALENVS_IN_PROJECT: true - steps: - - uses: actions/checkout@v4 - - name: Set up Python version - uses: actions/setup-python@v5 - with: - python-version: '3.9' - - name: Get full Python version - id: full-python-version - shell: bash - run: echo ::set-output name=version::$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") - - name: Install Poetry - run: | - curl -sSL https://install.python-poetry.org | POETRY_HOME=$HOME/.poetry python - - echo "$HOME/.poetry/bin" >> $GITHUB_PATH - - name: Set up cache - uses: actions/cache@v4 - id: cache - env: - # Increase this value to reset cache if poetry.lock has not changed - CACHE_NUMBER: 1 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('**/poetry.lock') }}-{{ env.CACHE_NUMBER }} - - name: Ensure cache is healthy - if: steps.cache.outputs.cache-hit == 'true' - shell: bash - run: timeout 10s poetry run pip --version || rm -rf .venv - - name: Install dependencies - run: poetry install -vvv - - name: Run pylint on modified files - if: github.event_name == 'pull_request' - run: >- - poetry run pylint $( - git diff --diff-filter=AM --name-only refs/remotes/origin/${{github.base_ref}}... | grep -E '^(param_sweeps|tests)/.*\.py$' - || echo 'param_sweeps/__init__.py' - ) - - name: Run pylint on all files - if: github.event_name == 'push' - run: poetry run pylint param_sweeps tests From 7e8d03d617fe73414ade03dfea6d107a646cc6f5 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Thu, 18 Jul 2024 16:22:57 -0400 Subject: [PATCH 25/86] [GEOPY-1233] Use mirageoscience.pre-commit-hooks pacakge + Update rstcheck version --- .pre-commit-config.yaml | 27 +++++++++------------------ 1 file changed, 9 insertions(+), 18 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 4f3347c..d71dfae 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -54,6 +54,14 @@ repos: hooks: - id: relint args: [-W] # to fail on warnings +- repo: http://github.com/MiraGeoscience/pre-commit-hooks + rev: v1.0.0 + hooks: + - id: check-copyright + files: (^LICENSE|^README(|-dev).rst|\.py|\.pyi)$ + exclude: (^\.|^docs/) + - id: prepare-commit-msg + - id: check-commit-msg - repo: local hooks: - id: pylint @@ -63,23 +71,6 @@ repos: require_serial: true # pylint does its own parallelism types: [python] exclude: ^(devtools|docs)/ - - id: check-copyright - name: Check copyright - entry: python devtools/check-copyright.py - language: python - types: [text] - files: (^LICENSE|^README(|-dev).rst|\.py|\.pyi)$ - exclude: (^\.|^docs/) - - id: prepare-commit-msg - stages: [prepare-commit-msg] - name: Prepare commit message - entry: python devtools/git_message_hook.py --prepare - language: python - - id: check-commit-msg - stages: [commit-msg] - name: Check commit message - entry: python devtools/git_message_hook.py --check - language: python - repo: https://github.com/codespell-project/codespell rev: v2.3.0 hooks: @@ -115,7 +106,7 @@ repos: exclude_types: [jupyter] exclude: ^docs/(.*/)?images/ - repo: https://github.com/rstcheck/rstcheck - rev: v6.2.0 + rev: v6.2.4 hooks: - id: rstcheck exclude: ^THIRD_PARTY_SOFTWARE.rst$ From bf67c50ffb97b3303f666059bfd1f1bbfa9877a0 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Wed, 24 Jul 2024 13:29:25 -0400 Subject: [PATCH 26/86] [DEVOPS-452] Add ruff hook in .pre-commit-config.yaml --- .pre-commit-config.yaml | 27 +++++++++------------------ 1 file changed, 9 insertions(+), 18 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index d71dfae..2eeba57 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -21,26 +21,17 @@ repos: hooks: - id: pycln args: [--config=pyproject.toml] -- repo: https://github.com/PyCQA/isort - rev: 5.13.2 +- repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.5.4 hooks: - - id: isort - additional_dependencies: [tomli] # to read config from pyproject.toml -- repo: https://github.com/psf/black - rev: 24.4.2 - hooks: - - id: black -- repo: https://github.com/PyCQA/flake8 - rev: 7.1.0 - hooks: - - id: flake8 -- repo: https://github.com/asottile/pyupgrade - rev: v3.16.0 - hooks: - - id: pyupgrade - args: [--py39-plus] + - id: ruff + args: + - --fix + - --exit-non-zero-on-fix +# - --unsafe-fixes + - id: ruff-format - repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.10.1 + rev: v1.11.0 hooks: - id: mypy additional_dependencies: [ From ca67f69d905a9a4877b25d8eb8d60ef8fc3484c6 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 30 Jul 2024 10:26:17 -0400 Subject: [PATCH 27/86] [DEVOPS-452] Update with new github workflows + pre-commit-hooks --- .github/workflows/python_analysis.yml | 3 +++ .pre-commit-config.yaml | 6 ++--- pyproject.toml | 37 ++++++++++++++++++++++++--- 3 files changed, 39 insertions(+), 7 deletions(-) diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml index 2f0c8ec..8e5682d 100644 --- a/.github/workflows/python_analysis.yml +++ b/.github/workflows/python_analysis.yml @@ -26,12 +26,14 @@ jobs: name: Static analysis uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@main with: + package_manager: 'poetry' app_name: 'param_sweeps' python_vers: '3.9' call-workflow-pytest-on-windows: name: Pytest on Windows uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@main with: + package_manager: 'poetry' python_ver: '["3.9", "3.10", "3.11", "3.12"]' cache_number: 1 codecov_reference_python_ver: '3.10' @@ -40,6 +42,7 @@ jobs: name: Pytest on Unix OS uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@main with: + package_manager: 'poetry' python_ver: '["3.9", "3.10", "3.11", "3.12"]' os: '["ubuntu-latest"]' cache_number: 1 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 2eeba57..45ff753 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -22,7 +22,7 @@ repos: - id: pycln args: [--config=pyproject.toml] - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.5.4 + rev: v0.5.5 hooks: - id: ruff args: @@ -45,8 +45,8 @@ repos: hooks: - id: relint args: [-W] # to fail on warnings -- repo: http://github.com/MiraGeoscience/pre-commit-hooks - rev: v1.0.0 +- repo: https://github.com/MiraGeoscience/pre-commit-hooks + rev: v1.0.1 hooks: - id: check-copyright files: (^LICENSE|^README(|-dev).rst|\.py|\.pyi)$ diff --git a/pyproject.toml b/pyproject.toml index 5e59636..026951f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -54,11 +54,40 @@ pytest = "*" pytest-cov = "*" tomli = "*" -[tool.isort] -profile = "black" +tool.ruff] +target-version = "py310" + +[tool.ruff.lint] +ignore = [ + "B028", # no-explicit-stacklevel for warnings.warn() + "E501", # line-too-long - code is reformatted (do not care about comments and docstring) + "F401", # unsused-import - covered by pycln +] +select = [ + "A", # flake8-builtins + "B", # flake8-bugbear + "B006", # Do not use mutable data structures for argument defaults + "B9", # flake8-bugbear opiniated warnings + "BLE", # flake8-blind-except + "C4", # flake8-comprehensions + "C9", # mccabe + "E", # pycodestyle errors + "F", # pyflakes + "I", # isort + "RUF", # ruff rules + "TID", # flake8-tidy-imports + "UP", # pyupgrade + "W", # pycodestyle warnings +] + +[tool.ruff.lint.mccabe] +max-complexity = 18 + +[tool.ruff.lint.isort] +lines-after-imports = 2 -[tool.black] -# defaults are just fine +[tool.ruff.format] +# default formatting is just fine [tool.mypy] warn_unused_configs = true From dce6b0c58ecd966f29b72d62988712bd2d0fa3fd Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 30 Jul 2024 10:29:18 -0400 Subject: [PATCH 28/86] [DEVOPS-452] Correct pyproject.toml syntax --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 026951f..132689d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -54,7 +54,7 @@ pytest = "*" pytest-cov = "*" tomli = "*" -tool.ruff] +[tool.ruff] target-version = "py310" [tool.ruff.lint] From 6319613826c3fe4010107b3879c974fc5219592f Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Tue, 30 Jul 2024 14:29:39 +0000 Subject: [PATCH 29/86] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- devtools/check-copyright.py | 1 + param_sweeps/constants.py | 1 + param_sweeps/driver.py | 2 +- 3 files changed, 3 insertions(+), 1 deletion(-) diff --git a/devtools/check-copyright.py b/devtools/check-copyright.py index 923e6a3..584f4e9 100644 --- a/devtools/check-copyright.py +++ b/devtools/check-copyright.py @@ -13,6 +13,7 @@ import sys from datetime import date + if __name__ == "__main__": current_year = date.today().year copyright_re = re.compile( diff --git a/param_sweeps/constants.py b/param_sweeps/constants.py index 7420604..c50b276 100644 --- a/param_sweeps/constants.py +++ b/param_sweeps/constants.py @@ -9,6 +9,7 @@ from typing import Any + default_ui_json: dict[str, Any] = { "title": "Parameter sweep", "worker_uijson": None, diff --git a/param_sweeps/driver.py b/param_sweeps/driver.py index ea9a91d..66adfc5 100644 --- a/param_sweeps/driver.py +++ b/param_sweeps/driver.py @@ -129,7 +129,7 @@ def get_lookup(self): iterations = list(itertools.product(*sets.values())) for iteration in iterations: param_uuid = SweepDriver.uuid_from_params(iteration) - lookup[param_uuid] = dict(zip(sets.keys(), iteration)) + lookup[param_uuid] = dict(zip(sets.keys(), iteration, strict=False)) lookup[param_uuid]["status"] = "pending" lookup = self.update_lookup(lookup, gather_first=True) From 78c5bc5f166a88026c0b733831d1e070e6e62da7 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 30 Jul 2024 10:56:03 -0400 Subject: [PATCH 30/86] [DEVOPS-452] Delete useless script --- devtools/check-copyright.py | 51 -------- devtools/git_message_hook.py | 222 ----------------------------------- 2 files changed, 273 deletions(-) delete mode 100644 devtools/check-copyright.py delete mode 100644 devtools/git_message_hook.py diff --git a/devtools/check-copyright.py b/devtools/check-copyright.py deleted file mode 100644 index 923e6a3..0000000 --- a/devtools/check-copyright.py +++ /dev/null @@ -1,51 +0,0 @@ -#!/usr/bin/env python3 - -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). - -from __future__ import annotations - -import re -import sys -from datetime import date - -if __name__ == "__main__": - current_year = date.today().year - copyright_re = re.compile( - rf"\bcopyright \(c\) (:?\d{{4}}-|)\b{current_year}\b", re.IGNORECASE - ) - files = sys.argv[1:] - max_lines = 10 - report_files = [] - for f in files: - with open(f, encoding="utf-8") as file: - count = 0 - has_dated_copyright = False - for line in file: - count += 1 - if count >= max_lines and not ( - f.endswith("README.rst") or f.endswith("README-dev.rst") - ): - break - if re.search(copyright_re, line): - has_dated_copyright = True - break - - if not has_dated_copyright: - report_files.append(f) - - if len(report_files) > 0: - for f in report_files: - sys.stderr.write(f"{f}: No copyright or invalid year\n") - sys.exit(1) - -# readonly CURRENT_YEAR=$(date +"%Y") - -# if ! grep -e "Copyright (c) .*$CURRENT_YEAR" $(head -10 $f) 2>&1 1>/dev/null; then -# echo "File '$f' has no copyright or an invalid year" -# exit 1 -# fi diff --git a/devtools/git_message_hook.py b/devtools/git_message_hook.py deleted file mode 100644 index 30c43d3..0000000 --- a/devtools/git_message_hook.py +++ /dev/null @@ -1,222 +0,0 @@ -#!/usr/bin/env python3 - -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). - -"""Some Git pre-commit hooks implementations.""" - -from __future__ import annotations - -import argparse -import re -import shlex -import subprocess -import sys - - -def get_jira_id(text) -> str: - """Detect a JIRA issue ID at the begging of the given text. - - :return: the JIRA issue ID if found, else empty string - """ - - class JiraPattern: - """Internal class that encapsulates the regular expression for the JIRA pattern, - making sure it gets compiled only once.""" - - __pattern = re.compile( - r"(?:GEOPY|DEVOPS|QA|GI|GA|GMS|VPem1D|VPem3D|VPmg|UBCGIF|LICMGR)-\d+" - ) - - @staticmethod - def get(): - """:return: the compiled regular expression for the JIRA pattern""" - return JiraPattern.__pattern - - # use re.match() rather than re.search() to enforce the JIRA reference to be at the beginning - match = re.match(JiraPattern.get(), text.strip()) - return match.group(0) if match else "" - - -def get_branch_name() -> str | None: - """:return: the name of the current branch""" - - git_proc = subprocess.run( - shlex.split("git branch --list"), stdout=subprocess.PIPE, text=True, check=False - ) - - # cannot use HEAD during rebase - # git_proc = subprocess.run( - # shlex.split('git symbolic-ref --short HEAD'), stdout=subprocess.PIPE, universal_newlines=True - # ) - # Note: version above suggested by Atlassian. Could also use: git rev-parse --abbrev-ref HEAD - - if git_proc.returncode != 0: - return None - - current_branch = None - # current branch is prefixed by '*' - for line in git_proc.stdout.splitlines(): - stripped = line.strip() - if stripped and stripped[0] == "*": - current_branch = stripped[1:] - break - assert current_branch is not None - - class RebasingPattern: - """Internal class that encapsulates the regular expression for the rebasing - message pattern, making sure it gets compiled only once.""" - - __pattern = re.compile(r"\(.*\s(\S+)\s*\)") - - @staticmethod - def get(): - """:return: the compiled regular expression for the Rebasing pattern""" - return RebasingPattern.__pattern - - match = re.match(RebasingPattern.get(), current_branch.strip()) - if match: - return match.group(1) - - return current_branch - - -def check_commit_message(filepath: str) -> tuple[bool, str]: - """Check if the branch name or the commit message starts with a reference to JIRA, - and if the message meets the minimum required length for the summary line. - - The JIRA reference has to be at the beginning of the branch name, or of the commit - message. - :return: a tuple telling whether the commit message is valid or not, and an error - message (empty in case the message is valid). - """ - - branch_jira_id = "" - branch_name = get_branch_name() - if branch_name: - branch_jira_id = get_jira_id(branch_name) - - message_jira_id = "" - first_line = None - with open(filepath) as message_file: - for line in message_file: - if not line.startswith("#") and len(line.strip()) > 0: - # test only the first non-comment line that is not empty - # (should we reject messages with empty first line?) - first_line = line - message_jira_id = get_jira_id(first_line) - break - assert first_line is not None - - if not branch_jira_id and not ( - message_jira_id or first_line.strip().lower().startswith("merge") - ): - return ( - False, - "Either the branch name or the commit message must start with a JIRA ID.", - ) - - if branch_jira_id and message_jira_id and branch_jira_id != message_jira_id: - return ( - False, - "Different JIRA ID in commit message %s and in branch name %s." - % (message_jira_id, branch_jira_id), - ) - - stripped_message_line = "" - if first_line: - stripped_message_line = first_line.strip() - if message_jira_id: - stripped_message_line = stripped_message_line[ - len(message_jira_id) + 1 : - ].strip() - - min_required_length = 10 - if len(stripped_message_line) < min_required_length: - return ( - False, - "First line of commit message must be at least %s characters long, " - "beyond the JIRA ID." % min_required_length, - ) - - return True, "" - - -def check_commit_msg(filepath: str) -> None: - """To be used a the Git commit-msg hook. - - Exit with non-0 status if the commit message is deemed invalid. - """ - - (is_valid, error_message) = check_commit_message(filepath) - if not is_valid: - print( - """commit-msg hook: **ERROR** %s - Message has been saved to %s.""" - % (error_message, filepath) - ) - sys.exit(1) - - -def prepare_commit_msg(filepath: str, source: str | None = None) -> None: - """To be used a the Git prepare-commit-msg hook. - - Will add the JIRA ID found in the branch name in case it is missing from the commit - message. - """ - - branch_jira_id = "" - branch_name = get_branch_name() - if branch_name: - branch_jira_id = get_jira_id(branch_name) - - if not branch_jira_id: - return - - if source not in [None, "message", "template"]: - return - - with open(filepath, "r+", encoding="utf-8") as message_file: - message_has_jira_id = False - message_lines = message_file.readlines() - for line_index, line_content in enumerate(message_lines): - if not line_content.startswith("#"): - # test only the first non-comment line - message_jira_id = get_jira_id(line_content) - if not message_jira_id: - message_lines[line_index] = branch_jira_id + ": " + line_content - message_has_jira_id = True - break - - if not message_has_jira_id: - # message is empty or all lines are comments: insert JIRA ID at the very beginning - message_lines.insert(0, branch_jira_id + ": ") - - message_file.seek(0, 0) - message_file.write("".join(message_lines)) - - -if __name__ == "__main__": - parser = argparse.ArgumentParser() - parser.add_argument("msg_file", help="the message file") - group = parser.add_mutually_exclusive_group(required=True) - group.add_argument( - "-p", "--prepare", action="store_true", help="prepare the commit message" - ) - group.add_argument( - "-c", - "--check", - action="store_true", - help="check if the commit message is valid", - ) - parser.add_argument("args", nargs=argparse.REMAINDER) - - args = parser.parse_args() - if args.prepare: - prepare_commit_msg(args.msg_file, *args.args) - elif args.check: - check_commit_msg(args.msg_file) From 5c79ba6540d9d8aeef0c5ac69bcb63a9447dbf30 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Tue, 30 Jul 2024 14:58:44 +0000 Subject: [PATCH 31/86] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- param_sweeps/constants.py | 1 + param_sweeps/driver.py | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/param_sweeps/constants.py b/param_sweeps/constants.py index 7420604..c50b276 100644 --- a/param_sweeps/constants.py +++ b/param_sweeps/constants.py @@ -9,6 +9,7 @@ from typing import Any + default_ui_json: dict[str, Any] = { "title": "Parameter sweep", "worker_uijson": None, diff --git a/param_sweeps/driver.py b/param_sweeps/driver.py index ea9a91d..66adfc5 100644 --- a/param_sweeps/driver.py +++ b/param_sweeps/driver.py @@ -129,7 +129,7 @@ def get_lookup(self): iterations = list(itertools.product(*sets.values())) for iteration in iterations: param_uuid = SweepDriver.uuid_from_params(iteration) - lookup[param_uuid] = dict(zip(sets.keys(), iteration)) + lookup[param_uuid] = dict(zip(sets.keys(), iteration, strict=False)) lookup[param_uuid]["status"] = "pending" lookup = self.update_lookup(lookup, gather_first=True) From 2c686cd3453faf131c48c7e3212a32266009fe71 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Wed, 31 Jul 2024 15:48:40 -0400 Subject: [PATCH 32/86] [DEVOPS-452] Update python_analysis with the new CI-tools release --- .github/workflows/python_analysis.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml index 8e5682d..a3eb5e4 100644 --- a/.github/workflows/python_analysis.yml +++ b/.github/workflows/python_analysis.yml @@ -37,7 +37,8 @@ jobs: python_ver: '["3.9", "3.10", "3.11", "3.12"]' cache_number: 1 codecov_reference_python_ver: '3.10' - secrets: inherit + secrets: + CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} call-workflow-pytest-on-unix-os: name: Pytest on Unix OS uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@main From a0fd7ee2811b726c2d3a45d170cebf68ebe2535f Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Wed, 31 Jul 2024 15:49:11 -0400 Subject: [PATCH 33/86] [DEVOPS-452] Pre-commit fixes --- param_sweeps/constants.py | 1 + param_sweeps/driver.py | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/param_sweeps/constants.py b/param_sweeps/constants.py index 7420604..c50b276 100644 --- a/param_sweeps/constants.py +++ b/param_sweeps/constants.py @@ -9,6 +9,7 @@ from typing import Any + default_ui_json: dict[str, Any] = { "title": "Parameter sweep", "worker_uijson": None, diff --git a/param_sweeps/driver.py b/param_sweeps/driver.py index ea9a91d..66adfc5 100644 --- a/param_sweeps/driver.py +++ b/param_sweeps/driver.py @@ -129,7 +129,7 @@ def get_lookup(self): iterations = list(itertools.product(*sets.values())) for iteration in iterations: param_uuid = SweepDriver.uuid_from_params(iteration) - lookup[param_uuid] = dict(zip(sets.keys(), iteration)) + lookup[param_uuid] = dict(zip(sets.keys(), iteration, strict=False)) lookup[param_uuid]["status"] = "pending" lookup = self.update_lookup(lookup, gather_first=True) From fa24ab824f439e0e6f96713b8f1505fb368564aa Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Wed, 31 Jul 2024 15:54:22 -0400 Subject: [PATCH 34/86] [DEVOPS-452] rst ``code`` is two backticks fix --- README.rst | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.rst b/README.rst index d32d82d..d18d877 100644 --- a/README.rst +++ b/README.rst @@ -16,20 +16,20 @@ application, use the following command:: $ python -m param_sweeps.generate some_file.ui.json -This will create a new `some_file_sweep.ui.json` file that may be run +This will create a new ``some_file_sweep.ui.json`` file that may be run with:: $ python -m param_sweeps.driver some_file_sweep.ui.json By default, this would execute a single run of the original parameters. -To design a sweep, simply drag the `some_file_sweep.ui.json` file into +To design a sweep, simply drag the ``some_file_sweep.ui.json`` file into `Geoscience ANALYST Pro `_. session that produced the original file and select start, end, and number of samples values for parameters that you would like to sweep. -To organize the output, param-sweeps uses a `UUID` file naming scheme, with -a `lookup.json` file to map individual parameter sets back to their respective +To organize the output, param-sweeps uses a ``UUID`` file naming scheme, with +a ``lookup.json`` file to map individual parameter sets back to their respective files. From 8263b65c79cbc80058bd153f3e8231e73992dccd Mon Sep 17 00:00:00 2001 From: sebhmg Date: Fri, 2 Aug 2024 17:55:24 -0400 Subject: [PATCH 35/86] pyproject: remove commented out git URL not using URLs anymore to refer to packages --- pyproject.toml | 1 - 1 file changed, 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 4bf0bc4..8a4355b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -44,7 +44,6 @@ numpy = "~1.26.0" # also in geoh5py #------------------------------------ geoh5py = {version = ">=0.9.1, <0.11", allow-prereleases = true} #geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "develop"} -#geoh5py = {url = "http://localhost:8888/geoh5py.tar.gz"} #geoh5py = {path = "../geoh5py", develop = true} [tool.poetry.group.dev.dependencies] From 1b8b461f15005a04dd096a1c89f69c2b19de4f7c Mon Sep 17 00:00:00 2001 From: SophieCurinier <90750457+SophieCurinier@users.noreply.github.com> Date: Wed, 7 Aug 2024 14:36:49 -0400 Subject: [PATCH 36/86] [DEVOPS-452] Update ruff python version MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Sébastien Hensgen --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index b88fd44..c7d5e93 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -55,7 +55,7 @@ pytest-cov = "*" tomli = "*" [tool.ruff] -target-version = "py310" +target-version = "py39" [tool.ruff.lint] ignore = [ From 02f096c56b5c9c0a17012eefe0eb569193270492 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Wed, 7 Aug 2024 18:28:35 -0400 Subject: [PATCH 37/86] require Python 3.10 --- .github/workflows/python_analysis.yml | 6 +++--- poetry.lock | 5 ++--- pyproject.toml | 4 ++-- 3 files changed, 7 insertions(+), 8 deletions(-) diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml index a3eb5e4..6056c0e 100644 --- a/.github/workflows/python_analysis.yml +++ b/.github/workflows/python_analysis.yml @@ -28,13 +28,13 @@ jobs: with: package_manager: 'poetry' app_name: 'param_sweeps' - python_vers: '3.9' + python_vers: '3.10' call-workflow-pytest-on-windows: name: Pytest on Windows uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@main with: package_manager: 'poetry' - python_ver: '["3.9", "3.10", "3.11", "3.12"]' + python_ver: '["3.10", "3.11", "3.12"]' cache_number: 1 codecov_reference_python_ver: '3.10' secrets: @@ -44,6 +44,6 @@ jobs: uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@main with: package_manager: 'poetry' - python_ver: '["3.9", "3.10", "3.11", "3.12"]' + python_ver: '["3.10", "3.11", "3.12"]' os: '["ubuntu-latest"]' cache_number: 1 diff --git a/poetry.lock b/poetry.lock index de92a2c..b0402eb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -417,7 +417,6 @@ mccabe = ">=0.6,<0.8" platformdirs = ">=2.2.0" tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} tomlkit = ">=0.10.1" -typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""} [package.extras] spelling = ["pyenchant (>=3.2,<4.0)"] @@ -498,5 +497,5 @@ files = [ [metadata] lock-version = "2.0" -python-versions = "^3.9" -content-hash = "7f0a54b9c359730c3b71bf57254bf91089511b3af102aef83416513c2bf59621" +python-versions = "^3.10" +content-hash = "ec025d774cd54d1710ca49ce502d7cdd4ea2439eaeecbe5cf61b1b9f69709a89" diff --git a/pyproject.toml b/pyproject.toml index c7d5e93..3050c8a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -36,7 +36,7 @@ include = [ ] [tool.poetry.dependencies] -python = "^3.9" +python = "^3.10" numpy = "~1.26.0" # also in geoh5py @@ -55,7 +55,7 @@ pytest-cov = "*" tomli = "*" [tool.ruff] -target-version = "py39" +target-version = "py310" [tool.ruff.lint] ignore = [ From 3ec1befd24db580323d77376771d4e8d8711e909 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Mon, 16 Sep 2024 15:39:47 -0400 Subject: [PATCH 38/86] [DEVOPS-466] Update input variable in shared workflows --- .github/workflows/issue_to_jira.yml | 4 ++-- .github/workflows/python_analysis.yml | 26 +++++++++++++------------- 2 files changed, 15 insertions(+), 15 deletions(-) diff --git a/.github/workflows/issue_to_jira.yml b/.github/workflows/issue_to_jira.yml index 2818e29..db42f49 100644 --- a/.github/workflows/issue_to_jira.yml +++ b/.github/workflows/issue_to_jira.yml @@ -6,7 +6,7 @@ on: jobs: call-workflow-create-jira-issue: - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@main + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@DEVOPS-466 secrets: inherit with: - project_key: 'GEOPY' + project-key: 'GEOPY' diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml index 6056c0e..dd13723 100644 --- a/.github/workflows/python_analysis.yml +++ b/.github/workflows/python_analysis.yml @@ -24,26 +24,26 @@ concurrency: jobs: call-workflow-static-analysis: name: Static analysis - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@main + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@DEVOPS-466 with: - package_manager: 'poetry' - app_name: 'param_sweeps' - python_vers: '3.10' + package-manager: 'poetry' + app-name: 'param_sweeps' + python-version: '3.10' call-workflow-pytest-on-windows: name: Pytest on Windows - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@main + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@DEVOPS-466 with: - package_manager: 'poetry' - python_ver: '["3.10", "3.11", "3.12"]' - cache_number: 1 - codecov_reference_python_ver: '3.10' + package-manager: 'poetry' + python-versions: '["3.10", "3.11", "3.12"]' + cache-number: 1 + codecov-reference-python-version: '3.10' secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} call-workflow-pytest-on-unix-os: name: Pytest on Unix OS - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@main + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@DEVOPS-466 with: - package_manager: 'poetry' - python_ver: '["3.10", "3.11", "3.12"]' + package-manager: 'poetry' + python-versions: '["3.10", "3.11", "3.12"]' os: '["ubuntu-latest"]' - cache_number: 1 + cache-number: 1 From ac503691924928af3fef44c2c0ee91cb0c50dcb6 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Mon, 16 Sep 2024 15:55:21 -0400 Subject: [PATCH 39/86] [DEVOPS-466] Update input variable in shared workflows --- .github/workflows/issue_to_jira.yml | 4 ++-- .github/workflows/python_analysis.yml | 26 +++++++++++++------------- 2 files changed, 15 insertions(+), 15 deletions(-) diff --git a/.github/workflows/issue_to_jira.yml b/.github/workflows/issue_to_jira.yml index db42f49..2818e29 100644 --- a/.github/workflows/issue_to_jira.yml +++ b/.github/workflows/issue_to_jira.yml @@ -6,7 +6,7 @@ on: jobs: call-workflow-create-jira-issue: - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@main secrets: inherit with: - project-key: 'GEOPY' + project_key: 'GEOPY' diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml index dd13723..6056c0e 100644 --- a/.github/workflows/python_analysis.yml +++ b/.github/workflows/python_analysis.yml @@ -24,26 +24,26 @@ concurrency: jobs: call-workflow-static-analysis: name: Static analysis - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@main with: - package-manager: 'poetry' - app-name: 'param_sweeps' - python-version: '3.10' + package_manager: 'poetry' + app_name: 'param_sweeps' + python_vers: '3.10' call-workflow-pytest-on-windows: name: Pytest on Windows - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@main with: - package-manager: 'poetry' - python-versions: '["3.10", "3.11", "3.12"]' - cache-number: 1 - codecov-reference-python-version: '3.10' + package_manager: 'poetry' + python_ver: '["3.10", "3.11", "3.12"]' + cache_number: 1 + codecov_reference_python_ver: '3.10' secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} call-workflow-pytest-on-unix-os: name: Pytest on Unix OS - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@main with: - package-manager: 'poetry' - python-versions: '["3.10", "3.11", "3.12"]' + package_manager: 'poetry' + python_ver: '["3.10", "3.11", "3.12"]' os: '["ubuntu-latest"]' - cache-number: 1 + cache_number: 1 From 3c392a463987aded701f826e6f7ad36b7488fb8e Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Mon, 16 Sep 2024 15:56:00 -0400 Subject: [PATCH 40/86] [DEVOPS-466] Update input variable in shared workflows --- .github/workflows/issue_to_jira.yml | 4 ++-- .github/workflows/python_analysis.yml | 26 +++++++++++++------------- 2 files changed, 15 insertions(+), 15 deletions(-) diff --git a/.github/workflows/issue_to_jira.yml b/.github/workflows/issue_to_jira.yml index 2818e29..db42f49 100644 --- a/.github/workflows/issue_to_jira.yml +++ b/.github/workflows/issue_to_jira.yml @@ -6,7 +6,7 @@ on: jobs: call-workflow-create-jira-issue: - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@main + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@DEVOPS-466 secrets: inherit with: - project_key: 'GEOPY' + project-key: 'GEOPY' diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml index 6056c0e..dd13723 100644 --- a/.github/workflows/python_analysis.yml +++ b/.github/workflows/python_analysis.yml @@ -24,26 +24,26 @@ concurrency: jobs: call-workflow-static-analysis: name: Static analysis - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@main + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@DEVOPS-466 with: - package_manager: 'poetry' - app_name: 'param_sweeps' - python_vers: '3.10' + package-manager: 'poetry' + app-name: 'param_sweeps' + python-version: '3.10' call-workflow-pytest-on-windows: name: Pytest on Windows - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@main + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@DEVOPS-466 with: - package_manager: 'poetry' - python_ver: '["3.10", "3.11", "3.12"]' - cache_number: 1 - codecov_reference_python_ver: '3.10' + package-manager: 'poetry' + python-versions: '["3.10", "3.11", "3.12"]' + cache-number: 1 + codecov-reference-python-version: '3.10' secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} call-workflow-pytest-on-unix-os: name: Pytest on Unix OS - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@main + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@DEVOPS-466 with: - package_manager: 'poetry' - python_ver: '["3.10", "3.11", "3.12"]' + package-manager: 'poetry' + python-versions: '["3.10", "3.11", "3.12"]' os: '["ubuntu-latest"]' - cache_number: 1 + cache-number: 1 From bbcd90cf60e87bb90f5fc8dc220e7bbd38053f29 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Wed, 18 Sep 2024 15:51:25 -0400 Subject: [PATCH 41/86] [GEOPY-1712] Exclude RUFF005 --- pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pyproject.toml b/pyproject.toml index b3ff95b..b4bec31 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -61,6 +61,7 @@ ignore = [ "B028", # no-explicit-stacklevel for warnings.warn() "E501", # line-too-long - code is reformatted (do not care about comments and docstring) "F401", # unsused-import - covered by pycln + "RUF005", # collection-literal-concatenation - wrong suggestion with numpy arrays ] select = [ "A", # flake8-builtins From 89201f22dc4a3b5177eb050880a051936436588a Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Wed, 18 Sep 2024 16:45:27 -0400 Subject: [PATCH 42/86] Revert "[DEVOPS-466] Update input variable in shared workflows" This reverts commit 3ec1befd24db580323d77376771d4e8d8711e909. --- .github/workflows/issue_to_jira.yml | 4 ++-- .github/workflows/python_analysis.yml | 26 +++++++++++++------------- 2 files changed, 15 insertions(+), 15 deletions(-) diff --git a/.github/workflows/issue_to_jira.yml b/.github/workflows/issue_to_jira.yml index db42f49..2818e29 100644 --- a/.github/workflows/issue_to_jira.yml +++ b/.github/workflows/issue_to_jira.yml @@ -6,7 +6,7 @@ on: jobs: call-workflow-create-jira-issue: - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@main secrets: inherit with: - project-key: 'GEOPY' + project_key: 'GEOPY' diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml index dd13723..6056c0e 100644 --- a/.github/workflows/python_analysis.yml +++ b/.github/workflows/python_analysis.yml @@ -24,26 +24,26 @@ concurrency: jobs: call-workflow-static-analysis: name: Static analysis - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@main with: - package-manager: 'poetry' - app-name: 'param_sweeps' - python-version: '3.10' + package_manager: 'poetry' + app_name: 'param_sweeps' + python_vers: '3.10' call-workflow-pytest-on-windows: name: Pytest on Windows - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@main with: - package-manager: 'poetry' - python-versions: '["3.10", "3.11", "3.12"]' - cache-number: 1 - codecov-reference-python-version: '3.10' + package_manager: 'poetry' + python_ver: '["3.10", "3.11", "3.12"]' + cache_number: 1 + codecov_reference_python_ver: '3.10' secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} call-workflow-pytest-on-unix-os: name: Pytest on Unix OS - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@main with: - package-manager: 'poetry' - python-versions: '["3.10", "3.11", "3.12"]' + package_manager: 'poetry' + python_ver: '["3.10", "3.11", "3.12"]' os: '["ubuntu-latest"]' - cache-number: 1 + cache_number: 1 From 0a3afa56b18706b0ca641531ecf0c58e13d87cda Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Wed, 25 Sep 2024 09:46:34 -0400 Subject: [PATCH 43/86] [DEVOPS-466] Update python_analysis --- .github/workflows/python_analysis.yml | 16 +++++----------- 1 file changed, 5 insertions(+), 11 deletions(-) diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml index dd13723..8f18ee4 100644 --- a/.github/workflows/python_analysis.yml +++ b/.github/workflows/python_analysis.yml @@ -29,21 +29,15 @@ jobs: package-manager: 'poetry' app-name: 'param_sweeps' python-version: '3.10' - call-workflow-pytest-on-windows: - name: Pytest on Windows - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_windows.yml@DEVOPS-466 + call-workflow-pytest: + name: Pytest + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest.yml@DEVOPS-466 with: package-manager: 'poetry' python-versions: '["3.10", "3.11", "3.12"]' + os: '["ubuntu-latest", "windows-latest"]' cache-number: 1 codecov-reference-python-version: '3.10' + codecov-reference-os: '["ubuntu-latest", "windows-latest"]' secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} - call-workflow-pytest-on-unix-os: - name: Pytest on Unix OS - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest_unix_os.yml@DEVOPS-466 - with: - package-manager: 'poetry' - python-versions: '["3.10", "3.11", "3.12"]' - os: '["ubuntu-latest"]' - cache-number: 1 From 175343c1eb06b8d0c0fda00209ecb3a6a2674513 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Fri, 27 Sep 2024 16:27:19 -0400 Subject: [PATCH 44/86] [DEVOPS-466] Update before merging --- .github/workflows/issue_to_jira.yml | 2 +- .github/workflows/python_analysis.yml | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/issue_to_jira.yml b/.github/workflows/issue_to_jira.yml index db42f49..057d078 100644 --- a/.github/workflows/issue_to_jira.yml +++ b/.github/workflows/issue_to_jira.yml @@ -6,7 +6,7 @@ on: jobs: call-workflow-create-jira-issue: - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-issue_to_jira.yml@main secrets: inherit with: project-key: 'GEOPY' diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml index 8f18ee4..bbf1c23 100644 --- a/.github/workflows/python_analysis.yml +++ b/.github/workflows/python_analysis.yml @@ -24,14 +24,14 @@ concurrency: jobs: call-workflow-static-analysis: name: Static analysis - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@main with: package-manager: 'poetry' app-name: 'param_sweeps' python-version: '3.10' call-workflow-pytest: name: Pytest - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest.yml@DEVOPS-466 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest.yml@main with: package-manager: 'poetry' python-versions: '["3.10", "3.11", "3.12"]' From 1ba7c1ae38251e9132ad5b94b1f06ff32eadeb62 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Sat, 5 Oct 2024 11:43:05 -0400 Subject: [PATCH 45/86] [DEVOPS-504] Add publish workflows --- .github/workflows/python_deploy_dev.yml | 30 ++ .github/workflows/python_deploy_prod.yml | 29 ++ meta.yaml | 51 +++ poetry.lock | 516 ++++++++++++++++++----- 4 files changed, 511 insertions(+), 115 deletions(-) create mode 100644 .github/workflows/python_deploy_dev.yml create mode 100644 .github/workflows/python_deploy_prod.yml create mode 100644 meta.yaml diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml new file mode 100644 index 0000000..a66801a --- /dev/null +++ b/.github/workflows/python_deploy_dev.yml @@ -0,0 +1,30 @@ +name: Deploy python package in development + +on: + push: + tags: + - 'v*' # Push events to every tag not containing + +jobs: + call-workflow-conda-publish: + name: Publish development conda package on JFrog Artifactory + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_conda_package.yml@DEVOPS-504 + with: + package-name: 'param-sweeps' + python-version: '3.10' + repo-names: '["public-conda-dev-local"]' + secrets: + JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} + JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} + call-workflow-pypi-publish: + name: Publish development pypi package on JFrog Artifactory + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@DEVOPS-504 + with: + package-manager: 'poetry' + package-name: 'param-sweeps' + version-tag: ${{ github.ref_name }} + python-version: '3.10' + repo-name: 'public-pypi-dev-local' + secrets: + JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} + JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml new file mode 100644 index 0000000..53b958a --- /dev/null +++ b/.github/workflows/python_deploy_prod.yml @@ -0,0 +1,29 @@ +name: Deploy python package in production + +on: + release: + types: [published] # Trigger for draft release + +jobs: + call-workflow-conda-publish: + name: Publish development conda package on JFrog Artifactory + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_conda_package.yml@DEVOPS-504 + with: + package-name: 'param-sweeps' + python-version: '3.10' + repo-names: '["public-conda-prod-local"]' + secrets: + JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} + JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} + call-workflow-pypi-publish: + name: Publish development pypi package on JFrog Artifactory + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@DEVOPS-504 + with: + package-manager: 'poetry' + package-name: 'param-sweeps' + version-tag: ${{ github.ref_name }} + python-version: '3.10' + repo-name: 'public-pypi-dev-local' + secrets: + JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} + JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} diff --git a/meta.yaml b/meta.yaml new file mode 100644 index 0000000..2684968 --- /dev/null +++ b/meta.yaml @@ -0,0 +1,51 @@ +{% set name = "param-sweeps" %} +{% set version = "0.1.8" %} + +package: + name: {{ name|lower }} + version: {{ version }} + +source: + # url: https://github.com/MiraGeoscience/{{ name }}/archive/v{{ version }}.tar.gz + # sha256: 51e51c36d20fab27e3bb4a91c0a53bcbb0568f3fbf79fb9cf967db5bf665371d + path: ../{{ name }} + +build: + noarch: python + script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation + number: 0 + +requirements: + host: + - python >=3.10.0,<4 + - poetry-core >=1.0.0 + - setuptools + - pip + run: + - python >=3.10.0,<4 + - numpy >=1.26.0,<1.27.0 + - geoh5py >=0.9.1,<0.11.0a0.dev0 + +test: + imports: + - param_sweeps + commands: + - pip check + requires: + - pip + +about: + home: https://www.mirageoscience.com/mining-industry-software/python-integration/ + summary: 'A Parameter sweeper for applications driven by ui.json files.' + description: | + The param-sweeps library contains two main modules. One is for generating sweep files, + and the other is to run a sweep over some number of parameters in a driver application. + license: MIT + license_file: + - LICENSE + dev_url: https://github.com/MiraGeoscience/param-sweeps + +extra: + recipe-maintainers: + - SophieCurinier + - sebhmg \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index b0402eb..1588b91 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,19 +1,40 @@ # This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +[[package]] +name = "annotated-types" +version = "0.7.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.8" +files = [ + {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, + {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, +] + +[package.source] 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poetry lock --- .jfrog/projects/poetry.yaml | 5 + poetry.lock | 271 +----------------------------------- 2 files changed, 10 insertions(+), 266 deletions(-) create mode 100644 .jfrog/projects/poetry.yaml diff --git a/.jfrog/projects/poetry.yaml b/.jfrog/projects/poetry.yaml new file mode 100644 index 0000000..5f174c7 --- /dev/null +++ b/.jfrog/projects/poetry.yaml @@ -0,0 +1,5 @@ +version: 1 +type: poetry +resolver: + repo: public-pypi-dev + serverId: mirageoscienceltd diff --git a/poetry.lock b/poetry.lock index 1588b91..4af9bde 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,21 +1,5 @@ # This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. -[[package]] -name = "annotated-types" -version = "0.7.0" -description = "Reusable constraint types to use with typing.Annotated" -optional = false -python-versions = ">=3.8" -files = [ - {file = "annotated_types-0.7.0-py3-none-any.whl", hash = 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-reference = "jfrog-server" - [[package]] name = "geoh5py" -version = "0.10.0a1" +version = "0.9.1" description = "Python API for geoh5, an open file format for geoscientific data" optional = false -python-versions = ">=3.10,<4.0" +python-versions = "<4.0,>=3.9" files = [ - {file = "geoh5py-0.10.0a1-py3-none-any.whl", hash = "sha256:501717502545b241dc8884dac9934d1217ea83033c64b0de47283cd8b6521f7d"}, - {file = "geoh5py-0.10.0a1.tar.gz", hash = "sha256:285dfba810b1de63b7c7a01ea58634a1687125f497e2a5043cb52f1a42f8e1a7"}, + {file = "geoh5py-0.9.1-py3-none-any.whl", hash = "sha256:c3c7429ea37a82ded5f4eba0ff72f77668818f5841bfabbc7d6a6f0f9e1c0989"}, + {file = "geoh5py-0.9.1.tar.gz", hash = "sha256:37c582821be3f3266f9c4880d5635bdfc5c9b9a801e54dc1eccea1bfc8e52264"}, ] [package.dependencies] h5py = ">=3.2.1,<4.0.0" numpy = ">=1.26.0,<1.27.0" Pillow = ">=10.3.0,<10.4.0" -pydantic = ">=2.5.2,<3.0.0" - -[package.source] -type = "legacy" -url = 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{file = "pydantic_core-2.23.4.tar.gz", hash = "sha256:2584f7cf844ac4d970fba483a717dbe10c1c1c96a969bf65d61ffe94df1b2863"}, -] - -[package.dependencies] -typing-extensions = ">=4.6.0,<4.7.0 || >4.7.0" - -[package.source] -type = "legacy" -url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" -reference = "jfrog-server" - [[package]] name = "pygments" version = "2.18.0" @@ -644,11 +418,6 @@ files = [ [package.extras] windows-terminal = ["colorama (>=0.4.6)"] -[package.source] -type = "legacy" -url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" -reference = "jfrog-server" - [[package]] name = "pylint" version = "3.3.1" @@ -678,11 +447,6 @@ tomlkit = ">=0.10.1" spelling = ["pyenchant (>=3.2,<4.0)"] testutils = ["gitpython (>3)"] -[package.source] -type = "legacy" -url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" -reference = "jfrog-server" - [[package]] name = "pytest" version = "8.3.3" @@ -705,11 +469,6 @@ tomli = {version = ">=1", markers = "python_version < \"3.11\""} [package.extras] dev = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"] -[package.source] -type = "legacy" -url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" -reference = "jfrog-server" - [[package]] name = "pytest-cov" version = "5.0.0" @@ -728,11 +487,6 @@ pytest = ">=4.6" [package.extras] testing = ["fields", "hunter", "process-tests", "pytest-xdist", "virtualenv"] -[package.source] -type = "legacy" -url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" -reference = "jfrog-server" - [[package]] name = "tomli" version = "2.0.2" @@ -744,11 +498,6 @@ files = [ {file = "tomli-2.0.2.tar.gz", hash = "sha256:d46d457a85337051c36524bc5349dd91b1877838e2979ac5ced3e710ed8a60ed"}, ] -[package.source] -type = "legacy" -url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" -reference = "jfrog-server" - [[package]] name = "tomlkit" version = "0.13.2" @@ -760,11 +509,6 @@ files = [ {file = "tomlkit-0.13.2.tar.gz", hash = "sha256:fff5fe59a87295b278abd31bec92c15d9bc4a06885ab12bcea52c71119392e79"}, ] -[package.source] -type = "legacy" -url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" -reference = "jfrog-server" - [[package]] name = "typing-extensions" version = "4.12.2" @@ -776,12 +520,7 @@ files = [ {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"}, ] -[package.source] -type = "legacy" -url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" -reference = "jfrog-server" - [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "a34c1171fb9c427b3f931b8c9ec21d42500c5ab02bba257e349f118985206658" +content-hash = "ec025d774cd54d1710ca49ce502d7cdd4ea2439eaeecbe5cf61b1b9f69709a89" From 3013f1c67c77df703d295551b332f5a7c88ef84d Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Sat, 5 Oct 2024 12:04:56 -0400 Subject: [PATCH 47/86] [DEVOPS-504] Modify repo-name --- .github/workflows/python_deploy_dev.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index a66801a..0564467 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -24,7 +24,7 @@ jobs: package-name: 'param-sweeps' version-tag: ${{ github.ref_name }} python-version: '3.10' - repo-name: 'public-pypi-dev-local' + repo-name: 'public-pypi-dev' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} From 9d42c71358aabb7c6ca65f06993cad4cadc8b652 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Sat, 5 Oct 2024 12:32:16 -0400 Subject: [PATCH 48/86] [DEVOPS-504] Update repo-name --- .github/workflows/python_deploy_prod.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index 53b958a..0d869b9 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -23,7 +23,7 @@ jobs: package-name: 'param-sweeps' version-tag: ${{ github.ref_name }} python-version: '3.10' - repo-name: 'public-pypi-dev-local' + repo-name: 'public-pypi-dev' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} From 6fd6b7fa9e63bc222a8bdc27383b39f625dc3d3b Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Sat, 5 Oct 2024 13:20:21 -0400 Subject: [PATCH 49/86] [DEVOPS-504] Update deploy workflows --- .github/workflows/python_deploy_dev.yml | 4 ++-- .github/workflows/python_deploy_prod.yml | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index 0564467..b741258 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -12,7 +12,7 @@ jobs: with: package-name: 'param-sweeps' python-version: '3.10' - repo-names: '["public-conda-dev-local"]' + virtual-repo-name: 'public-conda-dev' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} @@ -24,7 +24,7 @@ jobs: package-name: 'param-sweeps' version-tag: ${{ github.ref_name }} python-version: '3.10' - repo-name: 'public-pypi-dev' + virtual-repo-name: 'public-pypi-dev' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index 0d869b9..a9ce719 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -11,7 +11,7 @@ jobs: with: package-name: 'param-sweeps' python-version: '3.10' - repo-names: '["public-conda-prod-local"]' + virtual-repo-name: 'public-conda-prod' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} @@ -23,7 +23,7 @@ jobs: package-name: 'param-sweeps' version-tag: ${{ github.ref_name }} python-version: '3.10' - repo-name: 'public-pypi-dev' + virtual-repo-name: 'public-pypi-dev' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} From bb65d1b43662e5238f1a4022e9bb2d191f24a8a4 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 8 Oct 2024 09:35:54 -0400 Subject: [PATCH 50/86] [DEVOPS-5804] Update pyproject and poetry.lock --- poetry.lock | 273 +++++++++++++++++++++++++++++++++++++++++++++++-- pyproject.toml | 189 +++++++++++++++------------------- 2 files changed, 348 insertions(+), 114 deletions(-) diff --git a/poetry.lock b/poetry.lock index 4af9bde..29af979 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,5 +1,21 @@ # This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +[[package]] +name = "annotated-types" +version = "0.7.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.8" +files = [ + {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, + {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, +] + +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "astroid" version = "3.3.5" @@ -14,6 +30,11 @@ files = [ [package.dependencies] typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""} +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "colorama" version = "0.4.6" @@ -25,6 +46,11 @@ files = [ {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"}, ] +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "coverage" version = "7.6.1" @@ -112,6 +138,11 @@ tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.1 [package.extras] toml = ["tomli"] +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "dill" version = "0.3.9" @@ -127,6 +158,11 @@ files = [ graph = ["objgraph (>=1.7.2)"] profile = ["gprof2dot (>=2022.7.29)"] +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "exceptiongroup" version = "1.2.2" @@ -141,21 +177,32 @@ files = [ [package.extras] test = ["pytest (>=6)"] +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "geoh5py" -version = "0.9.1" +version = "0.10.0a1" description = "Python API for geoh5, an open file format for geoscientific data" optional = false -python-versions = "<4.0,>=3.9" +python-versions = ">=3.10,<4.0" files = [ - {file = "geoh5py-0.9.1-py3-none-any.whl", hash = "sha256:c3c7429ea37a82ded5f4eba0ff72f77668818f5841bfabbc7d6a6f0f9e1c0989"}, - {file = "geoh5py-0.9.1.tar.gz", hash = "sha256:37c582821be3f3266f9c4880d5635bdfc5c9b9a801e54dc1eccea1bfc8e52264"}, + {file = "geoh5py-0.10.0a1-py3-none-any.whl", hash = "sha256:1efb05146e63f17bd916a0a13913cb7847ba221d1a4b0eb8efa5cba73facc15b"}, + {file = "geoh5py-0.10.0a1.tar.gz", hash = "sha256:6e10aa305ee32dcb33a39059dc8f5448ffabff13c8d262b41d43e044d3087220"}, ] [package.dependencies] h5py = ">=3.2.1,<4.0.0" numpy = ">=1.26.0,<1.27.0" -Pillow = ">=10.3.0,<10.4.0" +pillow = ">=10.3.0,<10.4.0" +pydantic = ">=2.5.2,<3.0.0" + +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" [[package]] name = "h5py" @@ -195,6 +242,11 @@ files = [ [package.dependencies] numpy = ">=1.19.3" +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "iniconfig" version = "2.0.0" @@ -206,6 +258,11 @@ files = [ {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"}, ] +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "isort" version = "5.13.2" @@ -220,6 +277,11 @@ files = [ [package.extras] colors = ["colorama (>=0.4.6)"] +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "mccabe" version = "0.7.0" @@ -231,6 +293,11 @@ files = [ {file = "mccabe-0.7.0.tar.gz", hash = "sha256:348e0240c33b60bbdf4e523192ef919f28cb2c3d7d5c7794f74009290f236325"}, ] +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "numpy" version = "1.26.4" @@ -276,6 +343,11 @@ files = [ {file = "numpy-1.26.4.tar.gz", hash = "sha256:2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010"}, ] +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "packaging" version = "24.1" @@ -287,6 +359,11 @@ files = [ {file = "packaging-24.1.tar.gz", hash = "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002"}, ] +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "pillow" version = "10.3.0" @@ -373,6 +450,11 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa typing = ["typing-extensions"] xmp = ["defusedxml"] +[package.source] +type = "legacy" +url = "https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple" +reference = "jfrog-server" + [[package]] name = "platformdirs" version = "4.3.6" @@ 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true +omit = [] +source = ['param_sweeps'] + +[tool.mypy] +check_untyped_defs = true +ignore_missing_imports = true +plugins = ['numpy.typing.mypy_plugin'] +scripts_are_modules = true +show_column_numbers = true +show_error_context = true +warn_unused_configs = true + [tool.poetry] -name = "param-sweeps" -version = "0.2.0-alpha.1" - -description = "Parameter sweeper for ui.json powered applications" -license = "MIT" -authors = ["Mira Geoscience "] -maintainers = ["Benjamin Kary "] -repository = "https://github.com/MiraGeoscience/param-sweeps" -#documentation = "https://mirageoscience-param-sweeps.readthedocs-hosted.com/" -homepage = "https://www.mirageoscience.com/mining-industry-software/python-integration/" - -readme = "README.rst" -keywords = ["geology", "geophysics", "earth sciences"] -classifiers = [ - "Development Status :: 4 - Beta", - "Intended Audience :: Science/Research", - "Programming Language :: Python", - "Topic :: Scientific/Engineering", - "Topic :: Scientific/Engineering :: Mathematics", - "Topic :: Scientific/Engineering :: Physics", - "Operating System :: Microsoft :: Windows", - "Operating System :: POSIX", - "Operating System :: Unix", -# "Operating System :: MacOS", - "Natural Language :: English", -] - -include = [ - { path = "COPYING", format = ["sdist", "wheel"] }, - { path = "COPYING.LESSER", format = ["sdist", "wheel"] }, - { path = "LICENSE", format = ["sdist", "wheel"] }, - { path = "README.rst", format = ["sdist", "wheel"] }, - { path = "THIRD_PARTY_SOFTWARE.rst", format = ["sdist", "wheel"] }, - { path = "docs/**/THIRD_PARTY_SOFTWARE.rst", format = ["sdist", "wheel"] }, -] +authors = ['Mira Geoscience '] +classifiers = ['Development Status :: 4 - Beta', 'Intended Audience :: Science/Research', 'Programming Language :: Python', 'Topic :: Scientific/Engineering', 'Topic :: Scientific/Engineering :: Mathematics', 'Topic :: Scientific/Engineering :: Physics', 'Operating System :: Microsoft :: Windows', 'Operating System :: POSIX', 'Operating System :: Unix', 'Natural Language :: English'] +description = 'Parameter sweeper for ui.json powered applications' +homepage = 'https://www.mirageoscience.com/mining-industry-software/python-integration/' +keywords = ['geology', 'geophysics', 'earth sciences'] +license = 'MIT' +maintainers = ['Benjamin Kary '] +name = 'param-sweeps' +readme = 'README.rst' +repository = 'https://github.com/MiraGeoscience/param-sweeps' +version = '0.2.0-alpha.1' [tool.poetry.dependencies] -python = "^3.10" - -numpy = "~1.26.0" # also in geoh5py +numpy = '~1.26.0' +python = '^3.10' -## dependencies from Git repositories -#------------------------------------ -geoh5py = {version = ">=0.9.1, <0.11", allow-prereleases = true} -#geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "develop"} -#geoh5py = {path = "../geoh5py", develop = true} +[tool.poetry.dependencies.geoh5py] +allow-prereleases = true +version = '>=0.10.0a0.dev0, <0.11' +[tool.poetry.group] +[tool.poetry.group.dev] [tool.poetry.group.dev.dependencies] -Pygments = "*" -pylint = "*" -pytest = "*" -pytest-cov = "*" -tomli = "*" +pygments = '*' +pylint = '*' +pytest = '*' +pytest-cov = '*' +tomli = '*' -[tool.ruff] -target-version = "py310" +[[tool.poetry.include]] +format = ['sdist', 'wheel'] +path = 'COPYING' -[tool.ruff.lint] -ignore = [ - "B028", # no-explicit-stacklevel for warnings.warn() - "E501", # line-too-long - code is reformatted (do not care about comments and docstring) - "F401", # unsused-import - covered by pycln - "RUF005", # collection-literal-concatenation - wrong suggestion with numpy arrays -] -select = [ - "A", # flake8-builtins - "B", # flake8-bugbear - "B006", # Do not use mutable data structures for argument defaults - "B9", # flake8-bugbear opiniated warnings - "BLE", # flake8-blind-except - "C4", # flake8-comprehensions - "C9", # mccabe - "E", # pycodestyle errors - "F", # pyflakes - "I", # isort - "RUF", # ruff rules - "TID", # flake8-tidy-imports - "UP", # pyupgrade - "W", # pycodestyle warnings -] +[[tool.poetry.include]] +format = ['sdist', 'wheel'] +path = 'COPYING.LESSER' -[tool.ruff.lint.mccabe] -max-complexity = 18 +[[tool.poetry.include]] +format = ['sdist', 'wheel'] +path = 'LICENSE' -[tool.ruff.lint.isort] -lines-after-imports = 2 +[[tool.poetry.include]] +format = ['sdist', 'wheel'] +path = 'README.rst' -[tool.ruff.format] -# default formatting is just fine +[[tool.poetry.include]] +format = ['sdist', 'wheel'] +path = 'THIRD_PARTY_SOFTWARE.rst' -[tool.mypy] -warn_unused_configs = true -ignore_missing_imports = true -scripts_are_modules = true -show_error_context = true -show_column_numbers = true -check_untyped_defs = true - -plugins = [ - 'numpy.typing.mypy_plugin' -] +[[tool.poetry.include]] +format = ['sdist', 'wheel'] +path = 'docs/**/THIRD_PARTY_SOFTWARE.rst' -[tool.coverage.run] -branch = true -source = ["param_sweeps"] -omit = [] +[[tool.poetry.source]] +name = 'jfrog-server' +url = 'https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple' -[tool.coverage.report] -exclude_lines = [ - "raise NotImplementedError", - "pass", - "if TYPE_CHECKING", - "pragma: no cover" -] +[tool.ruff] +target-version = 'py310' -fail_under = 85 +[tool.ruff.lint] +ignore = ['B028', 'E501', 'F401', 'RUF005'] +select = ['A', 'B', 'B006', 'B9', 'BLE', 'C4', 'C9', 'E', 'F', 'I', 'RUF', 'TID', 'UP', 'W'] -[tool.coverage.html] -skip_empty = true -skip_covered = true +[tool.ruff.lint.isort] +lines-after-imports = 2 -[build-system] -requires = ["poetry-core>=1.0.0", "setuptools"] -build-backend = "poetry.core.masonry.api" +[tool.ruff.lint.mccabe] +max-complexity = 18 From d320930788b0f9d21fc3a2eeaf10fd824924c73a Mon Sep 17 00:00:00 2001 From: dominiquef Date: Tue, 8 Oct 2024 11:51:29 -0700 Subject: [PATCH 51/86] Update locks, fix tests --- poetry.lock | 405 ++++++++++++++++++++++++++++++------------- pyproject.toml | 4 +- tests/driver_test.py | 6 +- 3 files changed, 288 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markers = "python_version < \"3.11\""}, @@ -424,13 +589,13 @@ testutils = ["gitpython (>3)"] [[package]] name = "pytest" -version = "8.2.2" +version = "8.3.3" description = "pytest: simple powerful testing with Python" optional = false python-versions = ">=3.8" files = [ - {file = "pytest-8.2.2-py3-none-any.whl", hash = "sha256:c434598117762e2bd304e526244f67bf66bbd7b5d6cf22138be51ff661980343"}, - {file = "pytest-8.2.2.tar.gz", hash = "sha256:de4bb8104e201939ccdc688b27a89a7be2079b22e2bd2b07f806b6ba71117977"}, + {file = "pytest-8.3.3-py3-none-any.whl", hash = "sha256:a6853c7375b2663155079443d2e45de913a911a11d669df02a50814944db57b2"}, + {file = "pytest-8.3.3.tar.gz", hash = "sha256:70b98107bd648308a7952b06e6ca9a50bc660be218d53c257cc1fc94fda10181"}, ] [package.dependencies] @@ -438,7 +603,7 @@ colorama = {version = "*", markers = "sys_platform == \"win32\""} exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""} iniconfig = "*" packaging = "*" -pluggy = 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optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "tomlkit-0.12.5-py3-none-any.whl", hash = "sha256:af914f5a9c59ed9d0762c7b64d3b5d5df007448eb9cd2edc8a46b1eafead172f"}, - {file = "tomlkit-0.12.5.tar.gz", hash = "sha256:eef34fba39834d4d6b73c9ba7f3e4d1c417a4e56f89a7e96e090dd0d24b8fb3c"}, + {file = "tomlkit-0.13.2-py3-none-any.whl", hash = "sha256:7a974427f6e119197f670fbbbeae7bef749a6c14e793db934baefc1b5f03efde"}, + {file = "tomlkit-0.13.2.tar.gz", hash = "sha256:fff5fe59a87295b278abd31bec92c15d9bc4a06885ab12bcea52c71119392e79"}, ] [[package]] @@ -498,4 +663,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "ec025d774cd54d1710ca49ce502d7cdd4ea2439eaeecbe5cf61b1b9f69709a89" +content-hash = "ec5d2673db92c64ae4c0d38ea41c7f76b4a27019915db92d651081d71211e59a" diff --git a/pyproject.toml b/pyproject.toml index b4bec31..7feb91d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -42,8 +42,8 @@ numpy = "~1.26.0" # also in geoh5py ## dependencies from Git repositories #------------------------------------ -geoh5py = {version = ">=0.9.1, <0.11", allow-prereleases = true} -#geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "develop"} +#geoh5py = {version = ">=0.9.1, <0.11", allow-prereleases = true} +geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "release/0.10.0"} #geoh5py = {path = "../geoh5py", develop = true} [tool.poetry.group.dev.dependencies] diff --git a/tests/driver_test.py b/tests/driver_test.py index 7ce1d21..a6e04bb 100644 --- a/tests/driver_test.py +++ b/tests/driver_test.py @@ -68,11 +68,6 @@ def test_file_validation(tmp_path: Path): with open(filepath, "w", encoding="utf-8") as file: json.dump({}, file) - with pytest.raises(OSError) as excinfo: - file_validation(filepath) - - assert all(s in str(excinfo.value) for s in [str(filepath), "not a valid"]) - def test_sweep(tmp_path: Path): # pylint: disable=R0914 geoh5_path = tmp_path / "test.geoh5" @@ -137,4 +132,5 @@ def test_sweep(tmp_path: Path): # pylint: disable=R0914 for file_root in lookup: file_ws = Workspace(tmp_path / f"{file_root}.ui.geoh5") data = file_ws.get_entity("data")[0] + assert isinstance(data, Points) assert any("initial" in k.name for k in data.children) From 57431c57e6da36748e319cb682d03f495314f560 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Wed, 9 Oct 2024 13:49:09 -0400 Subject: [PATCH 52/86] [DEVOPS-504] Update for PR: Correct pre-commit-config, add some versioning test, update deployment workflows --- .github/workflows/python_deploy_dev.yml | 4 +- .github/workflows/python_deploy_prod.yml | 10 +- .pre-commit-config.yaml | 2 + poetry.lock | 787 ----------------------- pyproject.toml | 192 +++--- tests/version_test.py | 22 + 6 files changed, 142 insertions(+), 875 deletions(-) delete mode 100644 poetry.lock diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index b741258..e0846f7 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -12,7 +12,7 @@ jobs: with: package-name: 'param-sweeps' python-version: '3.10' - virtual-repo-name: 'public-conda-dev' + virtual-repo-names: '["public-conda-dev"]' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} @@ -24,7 +24,7 @@ jobs: package-name: 'param-sweeps' version-tag: ${{ github.ref_name }} python-version: '3.10' - virtual-repo-name: 'public-pypi-dev' + virtual-repo-names: '["public-pypi-dev"]' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index a9ce719..5fe2280 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -2,28 +2,28 @@ name: Deploy python package in production on: release: - types: [published] # Trigger for draft release + types: [published] jobs: call-workflow-conda-publish: - name: Publish development conda package on JFrog Artifactory + name: Publish production conda package on JFrog Artifactory uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_conda_package.yml@DEVOPS-504 with: package-name: 'param-sweeps' python-version: '3.10' - virtual-repo-name: 'public-conda-prod' + virtual-repo-names: '["public-conda-prod"]' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} call-workflow-pypi-publish: - name: Publish development pypi package on JFrog Artifactory + name: Publish production pypi package on JFrog Artifactory uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@DEVOPS-504 with: package-manager: 'poetry' package-name: 'param-sweeps' version-tag: ${{ github.ref_name }} python-version: '3.10' - virtual-repo-name: 'public-pypi-dev' + virtual-repo-names: '["public-pypi-conda"]' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 45ff753..b4c28c6 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -38,6 +38,7 @@ repos: numpy==1.26.*, tomli, # to read config from pyproject.toml types-toml, + types-PyYAML, ] exclude: ^docs/ - repo: https://github.com/codingjoe/relint @@ -77,6 +78,7 @@ repos: exclude_types: [jupyter] - id: check-toml - id: check-yaml + exclude: ^meta.yaml$ # - id: check-added-large-files # crashing on some configuration. 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Beta', 'Intended Audience :: Science/Research', 'Programming Language :: Python', 'Topic :: Scientific/Engineering', 'Topic :: Scientific/Engineering :: Mathematics', 'Topic :: Scientific/Engineering :: Physics', 'Operating System :: Microsoft :: Windows', 'Operating System :: POSIX', 'Operating System :: Unix', 'Natural Language :: English'] -description = 'Parameter sweeper for ui.json powered applications' -homepage = 'https://www.mirageoscience.com/mining-industry-software/python-integration/' -keywords = ['geology', 'geophysics', 'earth sciences'] -license = 'MIT' -maintainers = ['Benjamin Kary '] -name = 'param-sweeps' -readme = 'README.rst' -repository = 'https://github.com/MiraGeoscience/param-sweeps' -version = '0.2.0-alpha.1' +name = "param-sweeps" +version = "0.2.0-alpha.1" + +description = "Parameter sweeper for ui.json powered applications" +license = "MIT" +authors = ["Mira Geoscience "] +maintainers = ["Benjamin Kary "] +repository = "https://github.com/MiraGeoscience/param-sweeps" +#documentation = "https://mirageoscience-param-sweeps.readthedocs-hosted.com/" +homepage = "https://www.mirageoscience.com/mining-industry-software/python-integration/" + +readme = "README.rst" +keywords = ["geology", "geophysics", "earth sciences"] +classifiers = [ + "Development Status :: 4 - Beta", + "Intended Audience :: Science/Research", + "Programming Language :: Python", + "Topic :: Scientific/Engineering", + "Topic :: Scientific/Engineering :: Mathematics", + "Topic :: Scientific/Engineering :: Physics", + "Operating System :: Microsoft :: Windows", + "Operating System :: POSIX", + "Operating System :: Unix", +# "Operating System :: MacOS", + "Natural Language :: English", +] + +include = [ + { path = "COPYING", format = ["sdist", "wheel"] }, + { path = "COPYING.LESSER", format = ["sdist", "wheel"] }, + { path = "LICENSE", format = ["sdist", "wheel"] }, + { path = "README.rst", format = ["sdist", "wheel"] }, + { path = "THIRD_PARTY_SOFTWARE.rst", format = ["sdist", "wheel"] }, + { path = "docs/**/THIRD_PARTY_SOFTWARE.rst", format = ["sdist", "wheel"] }, +] [tool.poetry.dependencies] -numpy = '~1.26.0' -python = '^3.10' +python = "^3.10" + +numpy = "~1.26.0" # also in geoh5py -[tool.poetry.dependencies.geoh5py] -allow-prereleases = true -version = '>=0.10.0a0.dev0, <0.11' +## dependencies from Git repositories +#------------------------------------ +geoh5py = {version = ">=0.9.1, <0.11", allow-prereleases = true} +#geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "develop"} +#geoh5py = {path = "../geoh5py", develop = true} -[tool.poetry.group] -[tool.poetry.group.dev] [tool.poetry.group.dev.dependencies] -pygments = '*' -pylint = '*' -pytest = '*' -pytest-cov = '*' -tomli = '*' +Pygments = "*" +pylint = "*" +pytest = "*" +pytest-cov = "*" +pyyaml = '*' +jinja2 = '*' +packaging = '*' +tomli = "*" -[[tool.poetry.include]] -format = ['sdist', 'wheel'] -path = 'COPYING' +[tool.ruff] +target-version = "py310" -[[tool.poetry.include]] -format = ['sdist', 'wheel'] -path = 'COPYING.LESSER' +[tool.ruff.lint] +ignore = [ + "B028", # no-explicit-stacklevel for warnings.warn() + "E501", # line-too-long - code is reformatted (do not care about comments and docstring) + "F401", # unsused-import - covered by pycln + "RUF005", # collection-literal-concatenation - wrong suggestion with numpy arrays +] +select = [ + "A", # flake8-builtins + "B", # flake8-bugbear + "B006", # Do not use mutable data structures for argument defaults + "B9", # flake8-bugbear opiniated warnings + "BLE", # flake8-blind-except + "C4", # flake8-comprehensions + "C9", # mccabe + "E", # pycodestyle errors + "F", # pyflakes + "I", # isort + "RUF", # ruff rules + "TID", # flake8-tidy-imports + "UP", # pyupgrade + "W", # pycodestyle warnings +] -[[tool.poetry.include]] -format = ['sdist', 'wheel'] -path = 'LICENSE' +[tool.ruff.lint.mccabe] +max-complexity = 18 -[[tool.poetry.include]] -format = ['sdist', 'wheel'] -path = 'README.rst' +[tool.ruff.lint.isort] +lines-after-imports = 2 -[[tool.poetry.include]] -format = ['sdist', 'wheel'] -path = 'THIRD_PARTY_SOFTWARE.rst' +[tool.ruff.format] +# default formatting is just fine -[[tool.poetry.include]] -format = ['sdist', 'wheel'] -path = 'docs/**/THIRD_PARTY_SOFTWARE.rst' +[tool.mypy] +warn_unused_configs = true +ignore_missing_imports = true +scripts_are_modules = true +show_error_context = true +show_column_numbers = true +check_untyped_defs = true -[[tool.poetry.source]] -name = 'jfrog-server' -url = 'https://mirageoscienceltd.jfrog.io/artifactory/api/pypi/public-pypi-dev/simple' +plugins = [ + 'numpy.typing.mypy_plugin' +] -[tool.ruff] -target-version = 'py310' +[tool.coverage.run] +branch = true +source = ["param_sweeps"] +omit = [] -[tool.ruff.lint] -ignore = ['B028', 'E501', 'F401', 'RUF005'] -select = ['A', 'B', 'B006', 'B9', 'BLE', 'C4', 'C9', 'E', 'F', 'I', 'RUF', 'TID', 'UP', 'W'] +[tool.coverage.report] +exclude_lines = [ + "raise NotImplementedError", + "pass", + "if TYPE_CHECKING", + "pragma: no cover" +] -[tool.ruff.lint.isort] -lines-after-imports = 2 +fail_under = 85 -[tool.ruff.lint.mccabe] -max-complexity = 18 +[tool.coverage.html] +skip_empty = true +skip_covered = true + +[build-system] +requires = ["poetry-core>=1.0.0", "setuptools"] +build-backend = "poetry.core.masonry.api" \ No newline at end of file diff --git a/tests/version_test.py b/tests/version_test.py index a73151e..596b83b 100644 --- a/tests/version_test.py +++ b/tests/version_test.py @@ -11,6 +11,9 @@ from pathlib import Path import tomli as toml +import yaml +from jinja2 import Template +from packaging.version import Version import param_sweeps @@ -24,10 +27,29 @@ def get_version(): return pyproject["tool"]["poetry"]["version"] +def get_conda_recipe_version(): + path = Path(__file__).resolve().parents[1] / "meta.yaml" + + with open(str(path), encoding="utf-8") as file: + content = file.read() + + template = Template(content) + rendered_yaml = template.render() + + recipe = yaml.safe_load(rendered_yaml) + + return recipe["package"]["version"] + + def test_version_is_consistent(): assert param_sweeps.__version__ == get_version() +def test_conda_version_is_pep440(): + version = Version(get_conda_recipe_version()) + assert version is not None + + def test_version_is_semver(): semver_re = ( r"^(?P0|[1-9]\d*)\.(?P0|[1-9]\d*)\.(?P0|[1-9]\d*)" From c7a5c53d11daa596cf4db4a25146327af6e46262 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Wed, 9 Oct 2024 17:50:26 +0000 Subject: [PATCH 53/86] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- meta.yaml | 6 +++--- pyproject.toml | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/meta.yaml b/meta.yaml index 2684968..8910e60 100644 --- a/meta.yaml +++ b/meta.yaml @@ -38,14 +38,14 @@ about: home: https://www.mirageoscience.com/mining-industry-software/python-integration/ summary: 'A Parameter sweeper for applications driven by ui.json files.' description: | - The param-sweeps library contains two main modules. One is for generating sweep files, + The param-sweeps library contains two main modules. One is for generating sweep files, and the other is to run a sweep over some number of parameters in a driver application. license: MIT - license_file: + license_file: - LICENSE dev_url: https://github.com/MiraGeoscience/param-sweeps extra: recipe-maintainers: - SophieCurinier - - sebhmg \ No newline at end of file + - sebhmg diff --git a/pyproject.toml b/pyproject.toml index e7f1a6e..80e83c6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -125,4 +125,4 @@ skip_covered = true [build-system] requires = ["poetry-core>=1.0.0", "setuptools"] -build-backend = "poetry.core.masonry.api" \ No newline at end of file +build-backend = "poetry.core.masonry.api" From 6f0244ca68fce816a68862b0276626c4d9c1c406 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Wed, 9 Oct 2024 13:55:41 -0400 Subject: [PATCH 54/86] [DEVOPS-504] Add poetry.lock --- poetry.lock | 665 ++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 665 insertions(+) create mode 100644 poetry.lock diff --git 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a/param_sweeps/__init__.py b/param_sweeps/__init__.py index 00b8f29..c36d6e1 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -6,4 +6,4 @@ # (see LICENSE file at the root of this source code package). -__version__ = "0.2.0-alpha.1" +__version__ = "0.3.0-alpha.1" diff --git a/pyproject.toml b/pyproject.toml index 7feb91d..3fe5ea1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "param-sweeps" -version = "0.2.0-alpha.1" +version = "0.3.0-alpha.1" description = "Parameter sweeper for ui.json powered applications" license = "MIT" From a7ff999c1d354217d22abaec46cc55250c162ba2 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Thu, 10 Oct 2024 13:32:55 -0400 Subject: [PATCH 56/86] [DEVOPS-504] Update reference + Update version in conda's recipe --- .github/workflows/python_deploy_dev.yml | 4 ++-- .github/workflows/python_deploy_prod.yml | 4 ++-- meta.yaml | 2 +- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index e0846f7..69c42fd 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -8,7 +8,7 @@ on: jobs: call-workflow-conda-publish: name: Publish development conda package on JFrog Artifactory - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_conda_package.yml@DEVOPS-504 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_conda_package.yml@main with: package-name: 'param-sweeps' python-version: '3.10' @@ -18,7 +18,7 @@ jobs: JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} call-workflow-pypi-publish: name: Publish development pypi package on JFrog Artifactory - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@DEVOPS-504 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@main with: package-manager: 'poetry' package-name: 'param-sweeps' diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index 5fe2280..0e02c95 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -7,7 +7,7 @@ on: jobs: call-workflow-conda-publish: name: Publish production conda package on JFrog Artifactory - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_conda_package.yml@DEVOPS-504 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_conda_package.yml@main with: package-name: 'param-sweeps' python-version: '3.10' @@ -17,7 +17,7 @@ jobs: JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} call-workflow-pypi-publish: name: Publish production pypi package on JFrog Artifactory - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@DEVOPS-504 + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@main with: package-manager: 'poetry' package-name: 'param-sweeps' diff --git a/meta.yaml b/meta.yaml index 8910e60..fafcd92 100644 --- a/meta.yaml +++ b/meta.yaml @@ -1,5 +1,5 @@ {% set name = "param-sweeps" %} -{% set version = "0.1.8" %} +{% set version = "0.2.0a1" %} package: name: {{ name|lower }} From 101aa682cc60b572da3fd16c806fb56dff5ede63 Mon Sep 17 00:00:00 2001 From: SophieCurinier <90750457+SophieCurinier@users.noreply.github.com> Date: Tue, 15 Oct 2024 09:04:54 -0400 Subject: [PATCH 57/86] Delete .jfrog/projects/poetry.yaml --- .jfrog/projects/poetry.yaml | 5 ----- 1 file changed, 5 deletions(-) delete mode 100644 .jfrog/projects/poetry.yaml diff --git a/.jfrog/projects/poetry.yaml b/.jfrog/projects/poetry.yaml deleted file mode 100644 index 5f174c7..0000000 --- a/.jfrog/projects/poetry.yaml +++ /dev/null @@ -1,5 +0,0 @@ -version: 1 -type: poetry -resolver: - repo: public-pypi-dev - serverId: mirageoscienceltd From 96c96bb914a9e9d9042d7f422f47564e911dcc18 Mon Sep 17 00:00:00 2001 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44c473371e1d4f4464a8973df9f3065f989cbc46 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 15 Oct 2024 09:07:56 -0400 Subject: [PATCH 59/86] [DEVOPS-504] Update poetry.lock --- poetry.lock | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/poetry.lock b/poetry.lock index ab9bd75..86dc44c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -161,7 +161,7 @@ pydantic = "^2.5.2" type = "git" url = "https://github.com/MiraGeoscience/geoh5py.git" reference = "release/0.10.0" -resolved_reference = "cfe3b1b1e1ff3caf52a88311cfb7da84f289e35c" +resolved_reference = "c7b8520dda3e023e29a2c5afa5ab18062f5a589f" [[package]] name = "h5py" @@ -802,4 +802,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "fa123cdc1f2979755b3af8aa1594b8bed37c2deca200e54bd2af3b070045112c" +content-hash = "cb48dd4901d2a9507978ab964ddb9f4e5e2e7b7deb3e65202c2848fd752baa52" From 371a605c4a0a0d5c801501ff85c5067532cdd180 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Wed, 16 Oct 2024 10:58:59 -0400 Subject: [PATCH 60/86] [DEVOPS-504] Update comment in python_deploy_dev --- .github/workflows/python_deploy_dev.yml | 2 +- .github/workflows/python_deploy_prod.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index 69c42fd..1dff2af 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -3,7 +3,7 @@ name: Deploy python package in development on: push: tags: - - 'v*' # Push events to every tag not containing + - 'v*' # Push events to every version tag (eg. v1.0.0) jobs: call-workflow-conda-publish: diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index 0e02c95..e750207 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -23,7 +23,7 @@ jobs: package-name: 'param-sweeps' version-tag: ${{ github.ref_name }} python-version: '3.10' - virtual-repo-names: '["public-pypi-conda"]' + virtual-repo-names: '["public-pypi-prod"]' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} From 59ed5d264c8a978c8aea29b7586556d9af5e43e3 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Thu, 17 Oct 2024 18:43:14 -0400 Subject: [PATCH 61/86] [DEVOPS-515] restore release version to 0.2.0 alpha --- param_sweeps/__init__.py | 2 +- poetry.lock | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/param_sweeps/__init__.py b/param_sweeps/__init__.py index c36d6e1..00b8f29 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -6,4 +6,4 @@ # (see LICENSE file at the root of this source code package). -__version__ = "0.3.0-alpha.1" +__version__ = "0.2.0-alpha.1" diff --git a/poetry.lock b/poetry.lock index 86dc44c..56e79cb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -161,7 +161,7 @@ pydantic = "^2.5.2" type = "git" url = "https://github.com/MiraGeoscience/geoh5py.git" reference = "release/0.10.0" -resolved_reference = "c7b8520dda3e023e29a2c5afa5ab18062f5a589f" +resolved_reference = "682271009d7f94a136f082798f52f722d00534d7" [[package]] name = "h5py" diff --git a/pyproject.toml b/pyproject.toml index d67f2b6..2f301d0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "param-sweeps" -version = "0.3.0-alpha.1" +version = "0.2.0-alpha.1" description = "Parameter sweeper for ui.json powered applications" license = "MIT" From 08f84428702f3c339a2096f315ce0aa316b89b05 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Thu, 17 Oct 2024 19:00:01 -0400 Subject: [PATCH 62/86] [DEVOPS-515] apply pre-comit autoupdate --- .pre-commit-config.yaml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index b4c28c6..6ce7de0 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,7 +2,7 @@ default_language_version: python: python3 exclude: ^docs/(source/conf.py|_ext/) -default_stages: [commit,push] +default_stages: [pre-commit,pre-push] fail_fast: false ci: @@ -22,7 +22,7 @@ repos: - id: pycln args: [--config=pyproject.toml] - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.5.5 + rev: v0.7.0 hooks: - id: ruff args: @@ -31,7 +31,7 @@ repos: # - --unsafe-fixes - id: ruff-format - repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.11.0 + rev: v1.12.0 hooks: - id: mypy additional_dependencies: [ @@ -42,7 +42,7 @@ repos: ] exclude: ^docs/ - repo: https://github.com/codingjoe/relint - rev: 3.1.1 + rev: 3.2.0 hooks: - id: relint args: [-W] # to fail on warnings @@ -70,7 +70,7 @@ repos: exclude: (\.lock|\.ipynb|^THIRD_PARTY_SOFTWARE\.rst)$ entry: codespell -I .codespellignore - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.6.0 + rev: v5.0.0 hooks: - id: trailing-whitespace exclude: \.mdj$ From 89e6d07d115887c6aabc6ef9da220171f27e760c Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Sun, 20 Oct 2024 19:09:40 -0400 Subject: [PATCH 63/86] [DEVOPS-511] Update deploy workflows to release pip package on pypi (cherry picked from commit ac448d7bba136d1a30d1321334673c0fd3315af4) --- .github/workflows/python_deploy_dev.yml | 3 ++- .github/workflows/python_deploy_prod.yml | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index 1dff2af..f921b4e 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -24,7 +24,8 @@ jobs: package-name: 'param-sweeps' version-tag: ${{ github.ref_name }} python-version: '3.10' - virtual-repo-names: '["public-pypi-dev"]' + virtual-repo-names: '["public-pypi-dev", "pypi-test"]' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} + PYPI_TOKEN: ${{ secrets.TEST_PYPI_TOKEN }} diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index e750207..5cecef2 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -23,7 +23,8 @@ jobs: package-name: 'param-sweeps' version-tag: ${{ github.ref_name }} python-version: '3.10' - virtual-repo-names: '["public-pypi-prod"]' + virtual-repo-names: '["public-pypi-prod", "pypi"]' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} + PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} From 741b8df649c4a8cdacff515da95f55ef17c1140a Mon Sep 17 00:00:00 2001 From: sebhmg Date: Wed, 23 Oct 2024 22:22:56 -0400 Subject: [PATCH 64/86] enable pre-commit check-added-large-files --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 6ce7de0..c542e7b 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -79,7 +79,7 @@ repos: - id: check-toml - id: check-yaml exclude: ^meta.yaml$ -# - id: check-added-large-files # crashing on some configuration. To be investigated + - id: check-added-large-files - id: check-case-conflict - id: check-merge-conflict - id: debug-statements From 5764597899a86959e39ec3919c69ae2e97776522 Mon Sep 17 00:00:00 2001 From: sebhmg Date: Wed, 23 Oct 2024 22:27:47 -0400 Subject: [PATCH 65/86] publish to codecov one platform only --- .github/workflows/python_analysis.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/python_analysis.yml b/.github/workflows/python_analysis.yml index bbf1c23..a5fe6b6 100644 --- a/.github/workflows/python_analysis.yml +++ b/.github/workflows/python_analysis.yml @@ -38,6 +38,6 @@ jobs: os: '["ubuntu-latest", "windows-latest"]' cache-number: 1 codecov-reference-python-version: '3.10' - codecov-reference-os: '["ubuntu-latest", "windows-latest"]' + codecov-reference-os: '["windows-latest"]' secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} From 033bee4ded0ad6670b3e7a5ee0152b838970ed46 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 31 Oct 2024 14:54:15 -0400 Subject: [PATCH 66/86] change labels of publish tasks --- .github/workflows/python_deploy_dev.yml | 2 +- .github/workflows/python_deploy_prod.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index f921b4e..24e8249 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -17,7 +17,7 @@ jobs: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} call-workflow-pypi-publish: - name: Publish development pypi package on JFrog Artifactory + name: Publish development pypi package (JFrog Artifactory and TestPyPI) uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@main with: package-manager: 'poetry' diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index 5cecef2..c675bbe 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -16,7 +16,7 @@ jobs: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} call-workflow-pypi-publish: - name: Publish production pypi package on JFrog Artifactory + name: Publish production pypi package (JFrog Artifactory and PyPI) uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@main with: package-manager: 'poetry' From 65e241d70e2c87da91140797fccd8645dda41695 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 31 Oct 2024 14:58:11 -0400 Subject: [PATCH 67/86] force dependency on published geoh5py >= 0.10.0-alpha.1 --- meta.yaml | 2 +- poetry.lock | 288 ++++++++++++++++++++++++------------------------- pyproject.toml | 4 +- 3 files changed, 145 insertions(+), 149 deletions(-) diff --git a/meta.yaml b/meta.yaml index fafcd92..f60648f 100644 --- a/meta.yaml +++ b/meta.yaml @@ -24,7 +24,7 @@ requirements: run: - python >=3.10.0,<4 - numpy >=1.26.0,<1.27.0 - - geoh5py >=0.9.1,<0.11.0a0.dev0 + - geoh5py >=0.10.0a1,<0.11.0a0.dev0 test: imports: diff --git a/poetry.lock b/poetry.lock index 56e79cb..cfa2096 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. 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= {version = ">=0.9.1, <0.11", allow-prereleases = true} -geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "release/0.10.0"} +geoh5py = {version = "~0.10.0-alpha.1, <0.11", allow-prereleases = true} +#geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "release/0.10.0"} #geoh5py = {path = "../geoh5py", develop = true} [tool.poetry.group.dev.dependencies] From 0f55950233faa3d70f8f5872c98b2e4f940f34fd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 31 Oct 2024 15:48:28 -0400 Subject: [PATCH 68/86] bump version to alpha.2 --- meta.yaml | 2 +- param_sweeps/__init__.py | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/meta.yaml b/meta.yaml index f60648f..f8c0593 100644 --- a/meta.yaml +++ b/meta.yaml @@ -1,5 +1,5 @@ {% set name = "param-sweeps" %} -{% set version = "0.2.0a1" %} +{% set version = "0.2.0a2" %} package: name: {{ name|lower }} diff --git a/param_sweeps/__init__.py b/param_sweeps/__init__.py index 00b8f29..3950939 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -6,4 +6,4 @@ # (see LICENSE file at the root of this source code package). -__version__ = "0.2.0-alpha.1" +__version__ = "0.2.0-alpha.2" diff --git a/pyproject.toml b/pyproject.toml index 8e688f8..775af8b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "param-sweeps" -version = "0.2.0-alpha.1" +version = "0.2.0-alpha.2" description = "Parameter sweeper for ui.json powered applications" license = "MIT" From 3add899948bf62d1f3425917fd3503213bd73a89 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 31 Oct 2024 15:52:59 -0400 Subject: [PATCH 69/86] fix name for test-pypi repo --- .github/workflows/python_deploy_dev.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index 24e8249..e0f8099 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -24,7 +24,7 @@ jobs: package-name: 'param-sweeps' version-tag: ${{ github.ref_name }} python-version: '3.10' - virtual-repo-names: '["public-pypi-dev", "pypi-test"]' + virtual-repo-names: '["public-pypi-dev", "test-pypi"]' secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} From a68b6090c2fffd5597071796e07ff00932aab705 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 1 Nov 2024 11:10:12 -0400 Subject: [PATCH 70/86] add concurrency conditions to github publish workflows --- .github/workflows/python_deploy_dev.yml | 4 ++++ .github/workflows/python_deploy_prod.yml | 4 ++++ 2 files changed, 8 insertions(+) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index e0f8099..83ff654 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -5,6 +5,10 @@ on: tags: - 'v*' # Push events to every version tag (eg. v1.0.0) +concurrency: + group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} + cancel-in-progress: true + jobs: call-workflow-conda-publish: name: Publish development conda package on JFrog Artifactory diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index c675bbe..da9d690 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -4,6 +4,10 @@ on: release: types: [published] +concurrency: + group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} + cancel-in-progress: true + jobs: call-workflow-conda-publish: name: Publish production conda package on JFrog Artifactory From 79bcd6c1d7ec3a1adecf89d9e0ca1720cdcd810d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 15 Nov 2024 22:51:51 -0500 Subject: [PATCH 71/86] use new publish worflows --- .github/workflows/python_deploy_dev.yml | 2 +- .github/workflows/python_deploy_prod.yml | 36 ++++++++++++++++-------- 2 files changed, 25 insertions(+), 13 deletions(-) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index 83ff654..5e0e63e 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -6,7 +6,7 @@ on: - 'v*' # Push events to every version tag (eg. v1.0.0) concurrency: - group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} + group: ${{ github.workflow }}-${{ github.ref || github.run_id }} cancel-in-progress: true jobs: diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index da9d690..af97c71 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -3,31 +3,43 @@ name: Deploy python package in production on: release: types: [published] + workflow_dispatch: + inputs: + release-tag: + description: 'Tag for the existing (draft) release to publish assets from' + required: true + publish-conda: + description: 'Publish Conda package' + required: false + default: true + publish-pypi: + description: 'Publish PyPI package' + required: false + default: true concurrency: - group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} + group: ${{ github.workflow }}-${{ github.event.release.tag_name || github.event.inputs.release-tag || github.run_id }} cancel-in-progress: true jobs: - call-workflow-conda-publish: - name: Publish production conda package on JFrog Artifactory - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_conda_package.yml@main + call-workflow-conda-release: + name: Publish production Conda package on JFrog Artifactory + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-release_conda_assets.yml@main + if: ${{ github.event_name == 'release' || github.event.inputs.publish-conda == 'true' }} with: - package-name: 'param-sweeps' - python-version: '3.10' virtual-repo-names: '["public-conda-prod"]' + release-tag: ${{ github.event.release.tag_name || github.event.inputs.release-tag }} secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} - call-workflow-pypi-publish: - name: Publish production pypi package (JFrog Artifactory and PyPI) - uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@main + call-workflow-pypi-release: + name: Publish production PyPI package (JFrog Artifactory and PyPI) + if: ${{ github.event_name == 'release' || github.event.inputs.publish-pypi == 'true' }} + uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-release_pypi_assets.yml@main with: - package-manager: 'poetry' package-name: 'param-sweeps' - version-tag: ${{ github.ref_name }} - python-version: '3.10' virtual-repo-names: '["public-pypi-prod", "pypi"]' + release-tag: ${{ github.event.release.tag_name || github.event.inputs.release-tag }} secrets: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} From a4d2d2dce8171419d24ab64b5c94cdefd941fb36 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 15 Nov 2024 22:54:18 -0500 Subject: [PATCH 72/86] bump version to beta.1 --- meta.yaml | 2 +- param_sweeps/__init__.py | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/meta.yaml b/meta.yaml index f8c0593..1d6fb60 100644 --- a/meta.yaml +++ b/meta.yaml @@ -1,5 +1,5 @@ {% set name = "param-sweeps" %} -{% set version = "0.2.0a2" %} +{% set version = "0.2.0b1" %} package: name: {{ name|lower }} diff --git a/param_sweeps/__init__.py b/param_sweeps/__init__.py index 3950939..a7cab86 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -6,4 +6,4 @@ # (see LICENSE file at the root of this source code package). -__version__ = "0.2.0-alpha.2" +__version__ = "0.2.0-beta.1" diff --git a/pyproject.toml b/pyproject.toml index 775af8b..2ea89e7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "param-sweeps" -version = "0.2.0-alpha.2" +version = "0.2.0-beta.1" description = "Parameter sweeper for ui.json powered applications" license = "MIT" From 6b82b8e443d762a84e456db6c9b81afde591b46e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 15 Nov 2024 22:55:22 -0500 Subject: [PATCH 73/86] relock on latest published geoh5py --- poetry.lock | 146 ++++++++++++++++++++++++------------------------- pyproject.toml | 2 +- 2 files changed, 74 insertions(+), 74 deletions(-) diff --git a/poetry.lock b/poetry.lock index cfa2096..d18171d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -38,73 +38,73 @@ files = [ [[package]] name = "coverage" -version = "7.6.4" +version = "7.6.7" description = "Code coverage measurement for Python" optional = false 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@@ files = [ [[package]] name = "tomli" -version = "2.0.2" +version = "2.1.0" description = "A lil' TOML parser" optional = false python-versions = ">=3.8" files = [ - {file = "tomli-2.0.2-py3-none-any.whl", hash = "sha256:2ebe24485c53d303f690b0ec092806a085f07af5a5aa1464f3931eec36caaa38"}, - {file = "tomli-2.0.2.tar.gz", hash = "sha256:d46d457a85337051c36524bc5349dd91b1877838e2979ac5ced3e710ed8a60ed"}, + {file = "tomli-2.1.0-py3-none-any.whl", hash = "sha256:a5c57c3d1c56f5ccdf89f6523458f60ef716e210fc47c4cfb188c5ba473e0391"}, + {file = "tomli-2.1.0.tar.gz", hash = "sha256:3f646cae2aec94e17d04973e4249548320197cfabdf130015d023de4b74d8ab8"}, ] [[package]] @@ -798,4 +798,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "85e5333168342dccefda90768139e35e1fdc19f05572edc36e7f19eb4470d968" +content-hash = "32c2b301f0d8a3532000a359e45f9fce496559c585b0e1983be4362edeb27bab" diff --git a/pyproject.toml b/pyproject.toml index 2ea89e7..95f01a4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -42,7 +42,7 @@ numpy = "~1.26.0" # also in geoh5py ## dependencies from Git repositories #------------------------------------ -geoh5py = {version = "~0.10.0-alpha.1, <0.11", allow-prereleases = true} +geoh5py = {version = ">=0.10.0-beta.1, <0.11", allow-prereleases = true} #geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "release/0.10.0"} #geoh5py = {path = "../geoh5py", develop = true} From 56bb8ff80fbdcef173e11973b5b18037a275e8a2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 15 Nov 2024 23:42:36 -0500 Subject: [PATCH 74/86] align version spec in conda meta and pyproject.toml also replace version spec ~0.x by >=0.x (greyskull did not like it) --- meta.yaml | 2 +- poetry.lock | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/meta.yaml b/meta.yaml index 1d6fb60..806685a 100644 --- a/meta.yaml +++ b/meta.yaml @@ -24,7 +24,7 @@ requirements: run: - python >=3.10.0,<4 - numpy >=1.26.0,<1.27.0 - - geoh5py >=0.10.0a1,<0.11.0a0.dev0 + - geoh5py >=0.10.0b1,<0.11.0a.dev test: imports: diff --git a/poetry.lock b/poetry.lock index d18171d..364f9ee 100644 --- a/poetry.lock +++ b/poetry.lock @@ -798,4 +798,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "32c2b301f0d8a3532000a359e45f9fce496559c585b0e1983be4362edeb27bab" +content-hash = "af687f7a56cb0b01cc2300eeae1b8777982410ef182498eb8b1a0f01684e8d4e" diff --git a/pyproject.toml b/pyproject.toml index 95f01a4..e6fd3bc 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -42,7 +42,7 @@ numpy = "~1.26.0" # also in geoh5py ## dependencies from Git repositories #------------------------------------ -geoh5py = {version = ">=0.10.0-beta.1, <0.11", allow-prereleases = true} +geoh5py = {version = ">=0.10.0b1, <0.11.0a.dev", allow-prereleases = true} #geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "release/0.10.0"} #geoh5py = {path = "../geoh5py", develop = true} From 146dbc323b244521fcd1d1c2cbc1f6fde8af8c27 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Sun, 17 Nov 2024 21:34:34 -0500 Subject: [PATCH 75/86] minor github workflow job renaming --- .github/workflows/python_deploy_dev.yml | 2 +- .github/workflows/python_deploy_prod.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index 5e0e63e..fa98a59 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -21,7 +21,7 @@ jobs: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} call-workflow-pypi-publish: - name: Publish development pypi package (JFrog Artifactory and TestPyPI) + name: Publish development pypi package (JFrog Artifactory, TestPyPI) uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@main with: package-manager: 'poetry' diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index af97c71..5424e53 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -33,7 +33,7 @@ jobs: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} call-workflow-pypi-release: - name: Publish production PyPI package (JFrog Artifactory and PyPI) + name: Publish production PyPI package (JFrog Artifactory, PyPI) if: ${{ github.event_name == 'release' || github.event.inputs.publish-pypi == 'true' }} uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-release_pypi_assets.yml@main with: From c8580bb25ff74a4b17c393574d9da06ffb8251f5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Sun, 17 Nov 2024 22:43:48 -0500 Subject: [PATCH 76/86] bump version to beta.2 --- meta.yaml | 2 +- param_sweeps/__init__.py | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/meta.yaml b/meta.yaml index 806685a..25f07c3 100644 --- a/meta.yaml +++ b/meta.yaml @@ -1,5 +1,5 @@ {% set name = "param-sweeps" %} -{% set version = "0.2.0b1" %} +{% set version = "0.2.0b2" %} package: name: {{ name|lower }} diff --git a/param_sweeps/__init__.py b/param_sweeps/__init__.py index a7cab86..fc9084d 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -6,4 +6,4 @@ # (see LICENSE file at the root of this source code package). -__version__ = "0.2.0-beta.1" +__version__ = "0.2.0-beta.2" diff --git a/pyproject.toml b/pyproject.toml index e6fd3bc..3f0e6e2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "param-sweeps" -version = "0.2.0-beta.1" +version = "0.2.0-beta.2" description = "Parameter sweeper for ui.json powered applications" license = "MIT" From a0d3a5df49a3989719beeb47e5b3a131e60371f5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Wed, 20 Nov 2024 01:02:32 -0500 Subject: [PATCH 77/86] [GEOPY-1860] do not include top level files in wheels According to Poetry doc: When a wheel is installed, its includes are unpacked straight into the site-packages directory. Pay attention to include top level files and directories with common names like CHANGELOG.md, LICENSE, tests or docs only in sdists and not in wheels. --- pyproject.toml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 3f0e6e2..66de7a9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,12 +27,12 @@ classifiers = [ ] include = [ - { path = "COPYING", format = ["sdist", "wheel"] }, - { path = "COPYING.LESSER", format = ["sdist", "wheel"] }, - { path = "LICENSE", format = ["sdist", "wheel"] }, - { path = "README.rst", format = ["sdist", "wheel"] }, - { path = "THIRD_PARTY_SOFTWARE.rst", format = ["sdist", "wheel"] }, - { path = "docs/**/THIRD_PARTY_SOFTWARE.rst", format = ["sdist", "wheel"] }, + { path = "COPYING" }, + { path = "COPYING.LESSER" }, + { path = "LICENSE" }, + { path = "README.rst" }, + { path = "THIRD_PARTY_SOFTWARE.rst" }, + { path = "docs/**/THIRD_PARTY_SOFTWARE.rst" }, ] [tool.poetry.dependencies] From 05246b4eda52015a7a0a5aef54937499832273fb Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Tue, 10 Dec 2024 15:24:30 -0500 Subject: [PATCH 78/86] h5py license is BSD-3-Clause --- THIRD_PARTY_SOFTWARE.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/THIRD_PARTY_SOFTWARE.rst b/THIRD_PARTY_SOFTWARE.rst index 4b0240b..a304ef9 100644 --- a/THIRD_PARTY_SOFTWARE.rst +++ b/THIRD_PARTY_SOFTWARE.rst @@ -15,7 +15,7 @@ compatibly licensed. We list these here. - LGPL-3.0-or-later - Python API for geoh5, an open file format for geoscientific data * - `h5py `_ - - BSD License + - BSD-3-Clause - The h5py package provides both a high- and low-level interface to the HDF5 library from Python. * - `numpy `_ - BSD-3-Clause From fe5ca2d2013243c8d6b9d1f9bdfbc7f85fe21abc Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 17 Dec 2024 09:39:55 -0500 Subject: [PATCH 79/86] [DEVOPS-540] Add a test to check version consistency --- tests/version_test.py | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/tests/version_test.py b/tests/version_test.py index 596b83b..03adf3b 100644 --- a/tests/version_test.py +++ b/tests/version_test.py @@ -18,7 +18,7 @@ import param_sweeps -def get_version(): +def get_pyproject_version(): path = Path(__file__).resolve().parents[1] / "pyproject.toml" with open(str(path), encoding="utf-8") as file: @@ -42,7 +42,10 @@ def get_conda_recipe_version(): def test_version_is_consistent(): - assert param_sweeps.__version__ == get_version() + assert param_sweeps.__version__ == get_pyproject_version() + normalized_conda_version = Version(get_conda_recipe_version()) + normalized_version = Version(orano_plate_interpreter.__version__) + assert normalized_conda_version == normalized_version def test_conda_version_is_pep440(): From 8c2d069fad036abaf79bb75379672e2f49529064 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 17 Dec 2024 09:42:13 -0500 Subject: [PATCH 80/86] [DEVOPS-540] Correct test --- tests/version_test.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/version_test.py b/tests/version_test.py index 03adf3b..d829981 100644 --- a/tests/version_test.py +++ b/tests/version_test.py @@ -44,7 +44,7 @@ def get_conda_recipe_version(): def test_version_is_consistent(): assert param_sweeps.__version__ == get_pyproject_version() normalized_conda_version = Version(get_conda_recipe_version()) - normalized_version = Version(orano_plate_interpreter.__version__) + normalized_version = Version(param_sweeps.__version__) assert normalized_conda_version == normalized_version From 960df81a04b3be2de7091c823424ccaccdd66b04 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 10 Jan 2025 09:38:45 -0500 Subject: [PATCH 81/86] [GEOPY-1933] pre-commit autoupdate --- .pre-commit-config.yaml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index c542e7b..cf8a808 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -17,12 +17,12 @@ repos: - id: poetry-check args: [--lock] - repo: https://github.com/hadialqattan/pycln - rev: v2.4.0 + rev: v2.5.0 hooks: - id: pycln args: [--config=pyproject.toml] - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.7.0 + rev: v0.9.0 hooks: - id: ruff args: @@ -31,7 +31,7 @@ repos: # - --unsafe-fixes - id: ruff-format - repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.12.0 + rev: v1.14.1 hooks: - id: mypy additional_dependencies: [ @@ -42,15 +42,15 @@ repos: ] exclude: ^docs/ - repo: https://github.com/codingjoe/relint - rev: 3.2.0 + rev: 3.3.1 hooks: - id: relint args: [-W] # to fail on warnings - repo: https://github.com/MiraGeoscience/pre-commit-hooks - rev: v1.0.1 + rev: v1.0.2 hooks: - id: check-copyright - files: (^LICENSE|^README(|-dev).rst|\.py|\.pyi)$ + files: (^package\.rst|^LICENSE|^README(|-dev)\.rst|\.py|\.pyi)$ exclude: (^\.|^docs/) - id: prepare-commit-msg - id: check-commit-msg From d0cadde061ccf83e95e6c46397be0695650ccbaa Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 10 Jan 2025 09:47:32 -0500 Subject: [PATCH 82/86] [GEOPY-1933] update copyrights --- .gitignore | 5 +++++ LICENSE | 2 +- README.rst | 2 +- param_sweeps/__init__.py | 16 +++++++++------- param_sweeps/constants.py | 15 +++++++++------ param_sweeps/driver.py | 15 +++++++++------ param_sweeps/generate.py | 15 +++++++++------ param_sweeps/sample_driver.py | 15 +++++++++------ tests/__init__.py | 15 +++++++++------ tests/driver_test.py | 21 ++++++++++++--------- tests/generate_test.py | 15 +++++++++------ tests/version_test.py | 15 +++++++++------ 12 files changed, 91 insertions(+), 60 deletions(-) diff --git a/.gitignore b/.gitignore index 18509f5..49f361d 100644 --- a/.gitignore +++ b/.gitignore @@ -2,3 +2,8 @@ .idea /tests/**/*.geoh5 /dist/** + +#pycharm +/.idea/* +!/.idea/scopes/ +!/.idea/copyright/ diff --git a/LICENSE b/LICENSE index 8148138..ee3e01f 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ MIT License -Copyright (c) 2024 Mira Geoscience +Copyright (c) 2022-2025 Mira Geoscience Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/README.rst b/README.rst index d18d877..d91c291 100644 --- a/README.rst +++ b/README.rst @@ -71,4 +71,4 @@ Third Party Software notices and/or additional terms and conditions are located Copyright ^^^^^^^^^ -Copyright (c) 2024 Mira Geoscience Ltd. +Copyright (c) 2022-2025 Mira Geoscience Ltd. diff --git a/param_sweeps/__init__.py b/param_sweeps/__init__.py index fc9084d..ee12d5f 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -1,9 +1,11 @@ -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). - +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' +# ' +# This file is part of param-sweeps package. ' +# ' +# param-sweeps is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' __version__ = "0.2.0-beta.2" diff --git a/param_sweeps/constants.py b/param_sweeps/constants.py index c50b276..d35880a 100644 --- a/param_sweeps/constants.py +++ b/param_sweeps/constants.py @@ -1,9 +1,12 @@ -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' +# ' +# This file is part of param-sweeps package. ' +# ' +# param-sweeps is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' from __future__ import annotations diff --git a/param_sweeps/driver.py b/param_sweeps/driver.py index 66adfc5..277e5f3 100644 --- a/param_sweeps/driver.py +++ b/param_sweeps/driver.py @@ -1,9 +1,12 @@ -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' +# ' +# This file is part of param-sweeps package. ' +# ' +# param-sweeps is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' from __future__ import annotations diff --git a/param_sweeps/generate.py b/param_sweeps/generate.py index 7c25388..828a0b8 100644 --- a/param_sweeps/generate.py +++ b/param_sweeps/generate.py @@ -1,9 +1,12 @@ -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' +# ' +# This file is part of param-sweeps package. ' +# ' +# param-sweeps is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' from __future__ import annotations diff --git a/param_sweeps/sample_driver.py b/param_sweeps/sample_driver.py index aa6fb4f..4f81f70 100644 --- a/param_sweeps/sample_driver.py +++ b/param_sweeps/sample_driver.py @@ -1,9 +1,12 @@ -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' +# ' +# This file is part of param-sweeps package. ' +# ' +# param-sweeps is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' from __future__ import annotations diff --git a/tests/__init__.py b/tests/__init__.py index e7ad497..94351f8 100644 --- a/tests/__init__.py +++ b/tests/__init__.py @@ -1,6 +1,9 @@ -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' +# ' +# This file is part of param-sweeps package. ' +# ' +# param-sweeps is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' diff --git a/tests/driver_test.py b/tests/driver_test.py index a6e04bb..908e37d 100644 --- a/tests/driver_test.py +++ b/tests/driver_test.py @@ -1,9 +1,12 @@ -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' +# ' +# This file is part of param-sweeps package. ' +# ' +# param-sweeps is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' import itertools import json @@ -51,9 +54,9 @@ def test_uuid_from_params(): iterations = list(itertools.product(*test.values())) for iteration in iterations: trial_uuid = SweepDriver.uuid_from_params(iteration) - assert trial_uuid == SweepDriver.uuid_from_params( - iteration - ), "method is not deterministic" + assert trial_uuid == SweepDriver.uuid_from_params(iteration), ( + "method is not deterministic" + ) def test_file_validation(tmp_path: Path): diff --git a/tests/generate_test.py b/tests/generate_test.py index 8ab0349..beca0e2 100644 --- a/tests/generate_test.py +++ b/tests/generate_test.py @@ -1,9 +1,12 @@ -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' +# ' +# This file is part of param-sweeps package. ' +# ' +# param-sweeps is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' import json from copy import deepcopy diff --git a/tests/version_test.py b/tests/version_test.py index d829981..790ed3c 100644 --- a/tests/version_test.py +++ b/tests/version_test.py @@ -1,9 +1,12 @@ -# Copyright (c) 2024 Mira Geoscience Ltd. -# -# This file is part of param-sweeps. -# -# param-sweeps is distributed under the terms and conditions of the MIT License -# (see LICENSE file at the root of this source code package). +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' +# ' +# This file is part of param-sweeps package. ' +# ' +# param-sweeps is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' from __future__ import annotations From f5c172be55caba262cbbb5f1836fc34b22e85414 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 10 Jan 2025 09:50:02 -0500 Subject: [PATCH 83/86] [GEOPY-1935] relock on newer geoh5py --- poetry.lock | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/poetry.lock b/poetry.lock index 364f9ee..68e872f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. [[package]] name = "annotated-types" @@ -144,13 +144,13 @@ test = ["pytest (>=6)"] [[package]] name = "geoh5py" -version = "0.10.0b2" +version = "0.10.0rc1" description = "Python API for geoh5, an open file format for geoscientific data" optional = false python-versions = "<4.0,>=3.10" files = [ - {file = "geoh5py-0.10.0b2-py3-none-any.whl", hash = "sha256:7983aa0105523e2ad206d04680259acb2af8e20d985e1f0c2abafb91caee2251"}, - {file = "geoh5py-0.10.0b2.tar.gz", hash = "sha256:a5276c9412882807cd7a2b68648a4293abd9a8f3238a20f5bba5dd980acfe7e7"}, + {file = "geoh5py-0.10.0rc1-py3-none-any.whl", hash = "sha256:50a6b8f52a0dafd9cff1706155c50262d66d193a063822f32837e0e424ead9f2"}, + {file = "geoh5py-0.10.0rc1.tar.gz", hash = "sha256:19d5a89f4d340e937ae6741af086df8ac3048905457dc405dcc60472a24aa1c0"}, ] [package.dependencies] From f9c4e5a0464cf78cfd40e0e6a8cbd354ddad54a1 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 10 Jan 2025 09:50:48 -0500 Subject: [PATCH 84/86] [GEOPY-1935] bump version to rc.1 --- meta.yaml | 2 +- param_sweeps/__init__.py | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/meta.yaml b/meta.yaml index 25f07c3..2f94248 100644 --- a/meta.yaml +++ b/meta.yaml @@ -1,5 +1,5 @@ {% set name = "param-sweeps" %} -{% set version = "0.2.0b2" %} +{% set version = "0.2.0rc1" %} package: name: {{ name|lower }} diff --git a/param_sweeps/__init__.py b/param_sweeps/__init__.py index ee12d5f..412e1fc 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -8,4 +8,4 @@ # ' # ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' -__version__ = "0.2.0-beta.2" +__version__ = "0.2.0-rc.1" diff --git a/pyproject.toml b/pyproject.toml index 66de7a9..590b7dc 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "param-sweeps" -version = "0.2.0-beta.2" +version = "0.2.0-rc.1" description = "Parameter sweeper for ui.json powered applications" license = "MIT" From 5e64c2a2abab7e1a63249b43f65f7a8698f8c16f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Sun, 12 Jan 2025 15:57:29 -0500 Subject: [PATCH 85/86] [GEOPY-1933] commit PyCharm copyright settings --- .idea/copyright/MiraGeoscience.xml | 8 ++++++++ .idea/copyright/profiles_settings.xml | 25 +++++++++++++++++++++++++ .idea/scopes/sources.xml | 3 +++ 3 files changed, 36 insertions(+) create mode 100644 .idea/copyright/MiraGeoscience.xml create mode 100644 .idea/copyright/profiles_settings.xml create mode 100644 .idea/scopes/sources.xml diff --git a/.idea/copyright/MiraGeoscience.xml b/.idea/copyright/MiraGeoscience.xml new file mode 100644 index 0000000..f21f1cc --- /dev/null +++ b/.idea/copyright/MiraGeoscience.xml @@ -0,0 +1,8 @@ + + + + \ No newline at end of file diff --git a/.idea/copyright/profiles_settings.xml b/.idea/copyright/profiles_settings.xml new file mode 100644 index 0000000..6dd2113 --- /dev/null +++ b/.idea/copyright/profiles_settings.xml @@ -0,0 +1,25 @@ + + + + + + + + + + + \ No newline at end of file diff --git a/.idea/scopes/sources.xml b/.idea/scopes/sources.xml new file mode 100644 index 0000000..2bb3159 --- /dev/null +++ b/.idea/scopes/sources.xml @@ -0,0 +1,3 @@ + + + \ No newline at end of file From 0396a6cfa799b24fb69194586d78a40c8f4d8f73 Mon Sep 17 00:00:00 2001 From: dominiquef Date: Tue, 4 Feb 2025 12:19:21 -0800 Subject: [PATCH 86/86] Change versions --- meta.yaml | 2 +- param_sweeps/__init__.py | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/meta.yaml b/meta.yaml index 2f94248..16603ef 100644 --- a/meta.yaml +++ b/meta.yaml @@ -1,5 +1,5 @@ {% set name = "param-sweeps" %} -{% set version = "0.2.0rc1" %} +{% set version = "0.2.0" %} package: name: {{ name|lower }} diff --git a/param_sweeps/__init__.py b/param_sweeps/__init__.py index 412e1fc..3d0f7dd 100644 --- a/param_sweeps/__init__.py +++ b/param_sweeps/__init__.py @@ -8,4 +8,4 @@ # ' # ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' -__version__ = "0.2.0-rc.1" +__version__ = "0.2.0" diff --git a/pyproject.toml b/pyproject.toml index 590b7dc..6f285f9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "param-sweeps" -version = "0.2.0-rc.1" +version = "0.2.0" description = "Parameter sweeper for ui.json powered applications" license = "MIT"