Summer2024/environment.yml at main · Milstein-Lab/Summer2024 · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
name: neuroresearch
channels:
  - conda-forge
  - defaults
dependencies:
  - asttokens=2.4.1=pyhd8ed1ab_0
  - blas=1.0=mkl
  - bzip2=1.0.8=h2bbff1b_6
  - ca-certificates=2024.7.4=h56e8100_0
  - colorama=0.4.6=pyhd8ed1ab_0
  - comm=0.2.2=pyhd8ed1ab_0
  - debugpy=1.8.2=py311hda3d55a_0
  - decorator=5.1.1=pyhd8ed1ab_0
  - exceptiongroup=1.2.2=pyhd8ed1ab_0
  - executing=2.0.1=pyhd8ed1ab_0
  - icc_rt=2022.1.0=h6049295_2
  - importlib-metadata=8.0.0=pyha770c72_0
  - importlib_metadata=8.0.0=hd8ed1ab_0
  - ipykernel=6.29.5=pyh4bbf305_0
  - jedi=0.19.1=pyhd8ed1ab_0
  - jupyter_client=8.6.2=pyhd8ed1ab_0
  - jupyter_core=5.7.2=py311h1ea47a8_0
  - krb5=1.21.3=hdf4eb48_0
  - libffi=3.4.4=hd77b12b_1
  - libsodium=1.0.18=h8d14728_1
  - matplotlib-inline=0.1.7=pyhd8ed1ab_0
  - mkl-service=2.4.0=py311h2bbff1b_1
  - mkl_fft=1.3.8=py311h2bbff1b_0
  - mkl_random=1.2.4=py311h59b6b97_0
  - nest-asyncio=1.6.0=pyhd8ed1ab_0
  - numpy=1.26.4=py311hdab7c0b_0
  - numpy-base=1.26.4=py311hd01c5d8_0
  - openssl=3.3.1=h2466b09_2
  - packaging=24.1=pyhd8ed1ab_0
  - parso=0.8.4=pyhd8ed1ab_0
  - pickleshare=0.7.5=py_1003
  - pip=24.0=py311haa95532_0
  - platformdirs=4.2.2=pyhd8ed1ab_0
  - prompt-toolkit=3.0.47=pyha770c72_0
  - psutil=6.0.0=py311he736701_0
  - pure_eval=0.2.3=pyhd8ed1ab_0
  - pybind11-abi=5=hd3eb1b0_0
  - pygments=2.18.0=pyhd8ed1ab_0
  - python=3.11.9=he1021f5_0
  - python_abi=3.11=2_cp311
  - pywin32=306=py311h12c1d0e_2
  - pyzmq=26.0.3=py311h484c95c_0
  - scipy=1.13.1=py311h9f229c6_0
  - setuptools=69.5.1=py311haa95532_0
  - six=1.16.0=pyh6c4a22f_0
  - sqlite=3.45.3=h2bbff1b_0
  - stack_data=0.6.2=pyhd8ed1ab_0
  - tk=8.6.14=h0416ee5_0
  - tornado=6.4.1=py311he736701_0
  - traitlets=5.14.3=pyhd8ed1ab_0
  - typing_extensions=4.12.2=pyha770c72_0
  - tzdata=2024a=h04d1e81_0
  - ucrt=10.0.22621.0=h57928b3_0
  - vc=14.2=h2eaa2aa_4
  - vc14_runtime=14.40.33810=ha82c5b3_20
  - vs2015_runtime=14.40.33810=h3bf8584_20
  - wcwidth=0.2.13=pyhd8ed1ab_0
  - wheel=0.43.0=py311haa95532_0
  - xz=5.4.6=h8cc25b3_1
  - zeromq=4.3.5=he1f189c_4
  - zipp=3.19.2=pyhd8ed1ab_0
  - zlib=1.2.13=h8cc25b3_1
  - pip:
      - alembic==1.13.2
      - attrs==23.2.0
      - backcall==0.2.0
      - beautifulsoup4==4.12.3
      - bleach==6.1.0
      - certifi==2024.7.4
      - charset-normalizer==3.3.2
      - click==8.1.7
      - colorlog==6.8.2
      - contourpy==1.2.1
      - cycler==0.12.1
      - defusedxml==0.7.1
      - docopt==0.6.2
      - fastjsonschema==2.20.0
      - filelock==3.15.4
      - fonttools==4.53.1
      - fsspec==2024.6.1
      - greenlet==3.0.3
      - idna==3.7
      - intel-openmp==2021.4.0
      - ipython==8.12.3
      - jinja2==3.1.4
      - joblib==1.4.2
      - jsonschema==4.23.0
      - jsonschema-specifications==2023.12.1
      - jupyterlab-pygments==0.3.0
      - kiwisolver==1.4.5
      - mako==1.3.5
      - markupsafe==2.1.5
      - matplotlib==3.8.4
      - mistune==3.0.2
      - mkl==2021.4.0
      - mpmath==1.3.0
      - nbclient==0.10.0
      - nbconvert==7.16.4
      - nbformat==5.10.4
      - networkx==3.3
      - optuna==3.6.1
      - pandocfilters==1.5.1
      - pillow==10.4.0
      - pipreqs==0.5.0
      - plotly==5.18.0
      - pyparsing==3.1.2
      - python-dateutil==2.9.0.post0
      - pyyaml==6.0.1
      - referencing==0.35.1
      - requests==2.32.3
      - rpds-py==0.19.1
      - soupsieve==2.5
      - sqlalchemy==2.0.31
      - sympy==1.13.1
      - tbb==2021.13.0
      - tenacity==8.5.0
      - tinycss2==1.3.0
      - torch==2.3.0
      - tqdm==4.66.4
      - urllib3==2.2.2
      - webencodings==0.5.1
      - yarg==0.1.9