The COSICC R package can be installed using the devtools R package as follows.
if(!require(devtools)){ install.packages("devtools") }
if(!require(BiocManager)){ install.packages("BiocManager") }
options(repos = BiocManager::repositories())
BiocManager::install("scRNAseq")
devtools::install_github("https://github.com/theislab/destiny",dependencies = TRUE)
devtools::install_github("https://github.com/MarioniLab/COSICC",dependencies = TRUE, upgrade = TRUE,build_vignettes = TRUE)
There is a pfd vignette calledd Intro_to_COSICC_pdf.pdf.
Once the R package has been installed, a vignette can also be accessed by typing vignette("Intro_to_COSICC",package="COSICC").