Add Python research project template with uv, pre-commit, and CI/CD #3

	name: PR Monitor

	on:
	pull_request:
	branches: [main, develop]
	push:
	branches: [main, develop]

	jobs:
	quality-checks:
	runs-on: ubuntu-latest
	permissions:
	contents: read
	strategy:
	matrix:
	python-version: ["3.9", "3.10", "3.11"]

	steps:
	- name: Checkout code
	uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install uv
	run: \|
	curl -LsSf https://astral.sh/uv/install.sh \| sh
	echo "$HOME/.cargo/bin" >> $GITHUB_PATH

	- name: Install dependencies
	run: \|
	uv venv
	. .venv/bin/activate
	uv pip install -e ".[dev]"

	- name: Run Black
	run: \|
	. .venv/bin/activate
	black --check --config pyproject.toml src experiments tests

	- name: Run isort
	run: \|
	. .venv/bin/activate
	isort --check-only --settings-path pyproject.toml src experiments tests

	- name: Run Flake8
	run: \|
	. .venv/bin/activate
	flake8 --config .dev-config/.flake8 src experiments tests

	- name: Run pydocstyle
	run: \|
	. .venv/bin/activate
	pydocstyle --config .dev-config/.pydocstyle src experiments

	- name: Run mypy
	run: \|
	. .venv/bin/activate
	mypy --config-file .dev-config/mypy.ini src experiments

	- name: Run pylint
	run: \|
	. .venv/bin/activate
	pylint --rcfile .dev-config/.pylintrc src experiments

	- name: Run pytest
	run: \|
	. .venv/bin/activate
	pytest tests/ --cov=src --cov-report=xml --cov-report=term-missing

	- name: Upload coverage reports
	if: matrix.python-version == '3.11'
	uses: codecov/codecov-action@v4
	with:
	file: ./coverage.xml
	fail_ci_if_error: false

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