diff --git a/scFates/tests/test_w_plots.py b/scFates/tests/test_w_plots.py index eeff504..0c4fb9d 100644 --- a/scFates/tests/test_w_plots.py +++ b/scFates/tests/test_w_plots.py @@ -13,6 +13,8 @@ def test_pipeline(): scf.tl.curve(adata, Nodes=10, use_rep="pca", device="cpu", seed=1) F_PC1_epgc_cpu = adata.uns["graph"]["F"][0, :5] + scf.tl.explore_sigma(adata, Nodes=10, use_rep="pca", plot=True) + scf.tl.tree(adata, Nodes=10, use_rep="pca", method="epg", device="cpu", seed=1) F_PC1_epgt_cpu = adata.uns["graph"]["F"][0, :5] @@ -130,6 +132,7 @@ def test_pipeline(): adata.var["signi"] = True scf.tl.test_covariate(adata, "covariate") scf.tl.test_covariate(adata, "covariate", trend_test=True) + scf.tl.test_covariate(adata, "covariate", nested=True) scf.pl.trend_covariate( adata, adata.var_names[0], group_key="covariate", show_null=True ,show=False)