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1 parent 263531b commit 96ade92Copy full SHA for 96ade92
1 file changed
workflow/rules/select_best_assembly.smk
@@ -13,7 +13,7 @@ rule select_best_assembly:
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assembly=f"{output_dir}" + "best_assembly/{sample}/{sample}_best_assembly.fa",
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params:
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sample="{sample}",
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- results_dir=output_dir,
+ results_dir=lambda w, output: os.path.dirname(os.path.dirname(os.path.dirname(output.assembly))) + "/",
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threads: 1
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resources:
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mem_mb=get_very_low_mem,
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