diff --git a/ms2extensions/src/org/labkey/ms2extensions/PeptideCountPepXmlDataHandler.java b/ms2extensions/src/org/labkey/ms2extensions/PeptideCountPepXmlDataHandler.java index c2c56423..fdebac38 100644 --- a/ms2extensions/src/org/labkey/ms2extensions/PeptideCountPepXmlDataHandler.java +++ b/ms2extensions/src/org/labkey/ms2extensions/PeptideCountPepXmlDataHandler.java @@ -16,6 +16,7 @@ package org.labkey.ms2extensions; import org.apache.logging.log4j.Logger; +import org.jetbrains.annotations.NotNull; import org.jetbrains.annotations.Nullable; import org.labkey.api.data.Container; import org.labkey.api.exp.ExperimentDataHandler; @@ -28,7 +29,8 @@ import org.labkey.api.view.ActionURL; import org.labkey.api.view.ViewBackgroundInfo; -import java.io.File; +import org.labkey.vfs.FileLike; + import java.io.OutputStream; import java.util.List; @@ -52,7 +54,7 @@ public DataType getDataType() } @Override - public void importFile(ExpData data, File dataFile, ViewBackgroundInfo info, Logger log, XarContext context) throws ExperimentException + public void importFile(@NotNull ExpData data, @NotNull FileLike dataFile, @NotNull ViewBackgroundInfo info, @NotNull Logger log, @NotNull XarContext context) throws ExperimentException { _realHandler.importFile(data, dataFile, info, log, context); PeptideCountUpdater updater = new PeptideCountUpdater(); @@ -60,7 +62,7 @@ public void importFile(ExpData data, File dataFile, ViewBackgroundInfo info, Log } @Override - public void exportFile(ExpData data, File dataFile, User user, OutputStream out) throws ExperimentException + public void exportFile(ExpData data, FileLike dataFile, User user, OutputStream out) throws ExperimentException { _realHandler.exportFile(data, dataFile, user, out); } @@ -84,7 +86,7 @@ public void deleteData(ExpData data, Container container, User user) } @Override - public boolean hasContentToExport(ExpData data, File file) + public boolean hasContentToExport(ExpData data, FileLike file) { return _realHandler.hasContentToExport(data, file); }