diff --git a/genotyping/src/org/labkey/genotyping/sequences/AlleleFastaLoader.java b/genotyping/src/org/labkey/genotyping/sequences/AlleleFastaLoader.java
deleted file mode 100644
index cca9b965..00000000
--- a/genotyping/src/org/labkey/genotyping/sequences/AlleleFastaLoader.java
+++ /dev/null
@@ -1,53 +0,0 @@
-/*
- * Copyright (c) 2010 LabKey Corporation
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-package org.labkey.genotyping.sequences;
-
-import org.labkey.api.reader.FastaLoader;
-
-import java.io.File;
-
-/**
- * User: adam
- * Date: Aug 13, 2010
- * Time: 9:44:05 AM
- */
-public class AlleleFastaLoader extends FastaLoader<Allele>
-{
-    protected AlleleFastaLoader(File fastaFile)
-    {
-        super(fastaFile, new FastaIteratorElementFactory<>()
-        {
-            @Override
-            public Allele createNext(String header, byte[] body)
-            {
-                return new Allele(header, body);
-            }
-        });
-    }
-
-    @Override
-    public FastaIterator iterator()
-    {
-        return new AlleleIterator();
-    }
-
-    public class AlleleIterator extends FastaIterator
-    {
-        private AlleleIterator()
-        {
-        }
-    }
-}
diff --git a/genotyping/test/src/org/labkey/test/tests/GenotypingTest.java b/genotyping/test/src/org/labkey/test/tests/GenotypingTest.java
index 32d6c074..01950213 100644
--- a/genotyping/test/src/org/labkey/test/tests/GenotypingTest.java
+++ b/genotyping/test/src/org/labkey/test/tests/GenotypingTest.java
@@ -19,6 +19,7 @@
 import org.junit.BeforeClass;
 import org.junit.Test;
 import org.junit.experimental.categories.Category;
+import org.labkey.api.util.FileUtil;
 import org.labkey.test.BaseWebDriverTest;
 import org.labkey.test.Locator;
 import org.labkey.test.categories.CustomModules;
@@ -118,7 +119,7 @@ private void receiveDataFromGalaxyServer()
         String analysisFolder = "analysis_" + getRunNumber();
         for (String file: filesToCopy)
         {
-            copyFile(new File(getPipelineLoc(), file), new File(getPipelineLoc(), analysisFolder + "/" + file));
+            copyFile(FileUtil.appendName(getPipelineLoc(), file), FileUtil.appendName(FileUtil.appendName(getPipelineLoc(), analysisFolder), file));
         }
         refresh();
         waitForPipelineJobsToComplete(++pipelineJobCount, "Import genotyping analysis", false);
diff --git a/genotyping/test/src/org/labkey/test/tests/IlluminaTest.java b/genotyping/test/src/org/labkey/test/tests/IlluminaTest.java
index 9a56aedd..51e25704 100644
--- a/genotyping/test/src/org/labkey/test/tests/IlluminaTest.java
+++ b/genotyping/test/src/org/labkey/test/tests/IlluminaTest.java
@@ -19,6 +19,7 @@
 import org.junit.BeforeClass;
 import org.junit.Test;
 import org.junit.experimental.categories.Category;
+import org.labkey.api.util.FileUtil;
 import org.labkey.serverapi.reader.Readers;
 import org.labkey.test.BaseWebDriverTest;
 import org.labkey.test.Locator;
@@ -90,7 +91,7 @@ public void testSteps() throws Exception
     //https://docs.google.com/a/labkey.com/file/d/0B45Fm0-0-NLtdmpDR1hKaW5jSWc/edit
     private void verifyCleanIlluminaSampleSheets()
     {
-        importFolderFromZip(new File(getPipelineLoc(), "genoCleanSamples.folder.zip"), true, 2);
+        importFolderFromZip(FileUtil.appendName(getPipelineLoc(), "genoCleanSamples.folder.zip"), true, 2);
         goToProjectHome();
         click(Locator.linkWithText("Samples"));
         waitForText("SIVkcol2");