From e30ed6bb7621fdfc68bc67c4e14e5dc1f9fb5164 Mon Sep 17 00:00:00 2001
From: bbimber <bbimber@gmail.com>
Date: Fri, 11 Jul 2025 10:13:35 -0700
Subject: [PATCH 1/2] Add tcr repertoire stats table

---
 .../postgresql/tcrdb-15.57-15.58.sql          | 16 ++++++
 .../dbscripts/sqlserver/tcrdb-15.57-15.58.sql | 16 ++++++
 tcrdb/resources/schemas/tcrdb.xml             | 54 +++++++++++++++++++
 tcrdb/src/org/labkey/tcrdb/TCRdbModule.java   |  2 +-
 4 files changed, 87 insertions(+), 1 deletion(-)
 create mode 100644 tcrdb/resources/schemas/dbscripts/postgresql/tcrdb-15.57-15.58.sql
 create mode 100644 tcrdb/resources/schemas/dbscripts/sqlserver/tcrdb-15.57-15.58.sql

diff --git a/tcrdb/resources/schemas/dbscripts/postgresql/tcrdb-15.57-15.58.sql b/tcrdb/resources/schemas/dbscripts/postgresql/tcrdb-15.57-15.58.sql
new file mode 100644
index 00000000..80b9e7d9
--- /dev/null
+++ b/tcrdb/resources/schemas/dbscripts/postgresql/tcrdb-15.57-15.58.sql
@@ -0,0 +1,16 @@
+CREATE TABLE tcrdb.repertoire_stats (
+  rowid int SERIAL,
+  cdna_id int,
+  metricName varchar(1000),
+  value double precision,
+  qualValue varchar(4000),
+  comment varchar(4000),
+
+  container entityid,
+  created timestamp,
+  createdby int,
+  modified timestamp,
+  modifiedby int,
+
+  constraint PK_repertoire_stats PRIMARY KEY (rowid)
+);
\ No newline at end of file
diff --git a/tcrdb/resources/schemas/dbscripts/sqlserver/tcrdb-15.57-15.58.sql b/tcrdb/resources/schemas/dbscripts/sqlserver/tcrdb-15.57-15.58.sql
new file mode 100644
index 00000000..5e9c3699
--- /dev/null
+++ b/tcrdb/resources/schemas/dbscripts/sqlserver/tcrdb-15.57-15.58.sql
@@ -0,0 +1,16 @@
+CREATE TABLE tcrdb.repertoire_stats (
+  rowid int IDENTITY(1,1),
+  cdna_id int,
+  metricName varchar(1000),
+  value double precision,
+  qualValue varchar(4000),
+  comment varchar(4000),
+
+  container entityid,
+  created datetime,
+  createdby int,
+  modified datetime,
+  modifiedby int,
+
+  constraint PK_repertoire_stats PRIMARY KEY (rowid)
+);
\ No newline at end of file
diff --git a/tcrdb/resources/schemas/tcrdb.xml b/tcrdb/resources/schemas/tcrdb.xml
index 60a93c0a..b6384344 100644
--- a/tcrdb/resources/schemas/tcrdb.xml
+++ b/tcrdb/resources/schemas/tcrdb.xml
@@ -325,6 +325,60 @@
             </column>
             <column columnName="comment">
 
+            </column>
+            <column columnName="container">
+                <isHidden>true</isHidden>
+            </column>
+            <column columnName="createdby">
+                <isHidden>true</isHidden>
+            </column>
+            <column columnName="created">
+                <isUserEditable>false</isUserEditable>
+                <shownInInsertView>false</shownInInsertView>
+                <shownInUpdateView>false</shownInUpdateView>
+                <nullable>true</nullable>
+                <isHidden>true</isHidden>
+            </column>
+            <column columnName="modifiedby">
+                <isHidden>true</isHidden>
+            </column>
+            <column columnName="modified">
+                <isUserEditable>false</isUserEditable>
+                <shownInInsertView>false</shownInInsertView>
+                <shownInUpdateView>false</shownInUpdateView>
+                <nullable>true</nullable>
+                <isHidden>true</isHidden>
+            </column>
+        </columns>
+    </table>
+    <table tableName="repertoire_stats" tableDbType="TABLE" useColumnOrder="true">
+        <javaCustomizer class="org.labkey.laboratory.query.LaboratoryTableCustomizer" />
+        <tableTitle>TCR Repertoire Stats</tableTitle>
+        <titleColumn>rowid</titleColumn>
+        <columns>
+            <column columnName="rowid">
+                <columnTitle>Row Id</columnTitle>
+                <isHidden>true</isHidden>
+            </column>
+            <column columnName="cdna_id">
+                <columnTitle>cDNA ID</columnTitle>
+                <fk>
+                    <fkDbSchema>singlecell</fkDbSchema>
+                    <fkTable>cdna_libraries</fkTable>
+                    <fkColumnName>rowid</fkColumnName>
+                </fk>
+            </column>
+            <column columnName="metricName">
+                <columnTitle>Metric Name</columnTitle>
+            </column>
+            <column columnName="value">
+                <columnTitle>Value</columnTitle>
+            </column>
+            <column columnName="qualValue">
+                <columnTitle>Qualitative Value</columnTitle>
+            </column>
+            <column columnName="comment">
+
             </column>
             <column columnName="container">
                 <isHidden>true</isHidden>
diff --git a/tcrdb/src/org/labkey/tcrdb/TCRdbModule.java b/tcrdb/src/org/labkey/tcrdb/TCRdbModule.java
index 18e7b327..1f472626 100644
--- a/tcrdb/src/org/labkey/tcrdb/TCRdbModule.java
+++ b/tcrdb/src/org/labkey/tcrdb/TCRdbModule.java
@@ -46,7 +46,7 @@ public String getName()
     @Override
     public Double getSchemaVersion()
     {
-        return 15.57;
+        return 15.58;
     }
 
     @Override

From fb2e3a45a43921c19a3e0cbd13470e1a2162f15a Mon Sep 17 00:00:00 2001
From: bbimber <bbimber@gmail.com>
Date: Fri, 11 Jul 2025 10:45:25 -0700
Subject: [PATCH 2/2] Fix sql

---
 .../schemas/dbscripts/postgresql/tcrdb-15.57-15.58.sql          | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tcrdb/resources/schemas/dbscripts/postgresql/tcrdb-15.57-15.58.sql b/tcrdb/resources/schemas/dbscripts/postgresql/tcrdb-15.57-15.58.sql
index 80b9e7d9..5c5a9b3f 100644
--- a/tcrdb/resources/schemas/dbscripts/postgresql/tcrdb-15.57-15.58.sql
+++ b/tcrdb/resources/schemas/dbscripts/postgresql/tcrdb-15.57-15.58.sql
@@ -1,5 +1,5 @@
 CREATE TABLE tcrdb.repertoire_stats (
-  rowid int SERIAL,
+  rowid SERIAL,
   cdna_id int,
   metricName varchar(1000),
   value double precision,