DIAgui_RobustSummarization/DESCRIPTION at main · LSMBO/DIAgui_RobustSummarization · GitHub

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Package: DIAgui
Version: 1.4.10
Type: Package
Title: A shiny app for processing DIAnn output in proteomics
Author: Marc-Antoine GERAULT
Maintainer: Marc-Antoine GERAULT <marco.gerault@gmail.com>
Description: This package contains a shiny app to process the report.tsv file,
             the output from DIA-NN. Functions used in the app are available
             for use in an external R pipeline.
             This package totally depends on the iq package and also takes
             code from the diann package from Vadim Demichev.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Depends:
    R (>= 4.0.0),
    dplyr (>= 1.0.0),
    iq (>= 1.9.0),
    seqinr (>= 4.2)
Imports:
    shiny,
    shinydashboard,
    shinycssloaders,
    shinyWidgets,
    shinyFiles,
    shinyjs,
    shinyMatrix,
    colourpicker,
    htmlwidgets,
    data.table,
    arrow,
    tidyr,
    mice,
    imputeLCMD,
    openxlsx,
    plotly,
    ggplot2 (>= 3.3.0),
    cowplot,
    ggrepel,
    ggpubr,
    stringr,
    rio,
    Rcpp,
    RcppEigen,
    DT,
    MsCoreUtils
Suggests:
    knitr,
    rmarkdown,
    impute
Enhances:
    diann
LinkingTo:
    Rcpp,
    RcppEigen
VignetteBuilder: knitr