I think there are mistakes in https://github.com/KorfLab/StochHMM/wiki/Developing-your-own-application
- hmm.import(file,NULL); should be hmm.import(model_file,NULL);
- The trellis and traceback constructor expect model pointers and not references
- print_gff expects at least a string
- in general everything belongs to the StochHMM namespace -> add using or namespace
I think there are mistakes in https://github.com/KorfLab/StochHMM/wiki/Developing-your-own-application