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NiW: Notebooks into Workflows

This is a project to convert Jupyter Notebooks into WINGS workflows.

How to use NiW

To execute NiW, open the terminal and enter:

$ python niw.py example/Disease+Analysis.ipynb

NiW creates:

  • a folder workflow and a subfolder DiseaseAnalysis, based on the notebook filename after removing spaces and any special characters.
  • a zip file for each component of the corresponding WINGS workflow.

TODO:

  • Integrate NiW with the WINGS API to create automatically the WINGS workflow, workflow components, component types and data types. For more details about the WINGS workflows, see WINGS tutorial.