Currently the synonyms/mappings for 3 bacterial data sources – BacDive, Madin et al and BactoTraits are coming from different columns in the METPO google sheet.
The different columns capturing class mappings are in the following columns in the 'relabeled classes' tab:
- bacdive keyword synonym
- madin synonym or field
- bactotraits related synonym
The different columns capturing property mappings are in the following column in the 'properties' tab:
- synonym property and value TUPLES
There is a newly proposed structure to capture synonyms/mappings in the 'source mappings' tab. We need to update the helper methods in https://github.com/Knowledge-Graph-Hub/kg-microbe/blob/master/kg_microbe/utils/mapping_file_utils.py and their usage in the respective data source transformation pipelines to work with this new structure.
Currently the synonyms/mappings for 3 bacterial data sources – BacDive, Madin et al and BactoTraits are coming from different columns in the METPO google sheet.
The different columns capturing class mappings are in the following columns in the 'relabeled classes' tab:
The different columns capturing property mappings are in the following column in the 'properties' tab:
There is a newly proposed structure to capture synonyms/mappings in the 'source mappings' tab. We need to update the helper methods in https://github.com/Knowledge-Graph-Hub/kg-microbe/blob/master/kg_microbe/utils/mapping_file_utils.py and their usage in the respective data source transformation pipelines to work with this new structure.