LSHSnowclone/generate_bash.py at main · JulienBez/LSHSnowclone · GitHub

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# Generate bash scripts for slurm execution

from src.utils import *

removeFolder("jobs")
createFolder("jobs/bash_scripts")

all_scripts = []

languages = openJson("logs/dict_languages.json").keys()

for lang in languages:

    cpu_mem = "32G"
    if lang == "en":
        cpu_mem = "64G"

    bash_command = f"""\
#!/bin/sh

#SBATCH --job-name={lang}_snowclones
#SBATCH --output=jobs/bash_scripts/{lang}_snowclones_%j.out
#SBATCH --mail-user=bezancon@lisn.fr
#SBATCH --mail-type=ALL
#SBATCH --cpus-per-task=4
#SBATCH --mem-per-cpu={cpu_mem}
#SBATCH --time=00-5:00:00

export OMP_NUM_THREADS=${{SLURM_CPUS_PER_TASK}}

source ~/.bashrc
conda activate PICOX_conversion
python main.py -l {lang} -ms
conda deactivate
"""

    all_scripts.append("sbatch " + f"jobs/bash_scripts/{lang}.sh")
    writeFile(f"jobs/bash_scripts/{lang}.sh",bash_command)

writeFile(f"jobs/run_snowclones.sh","#!/bin/bash \n" + "\n".join(all_scripts))

get_data = f"""\
#!/bin/bash

#SBATCH --job-name=JB_snowclones
#SBATCH --output=jobs/get_data_%j.out
#SBATCH --mail-user=bezancon@lisn.fr
#SBATCH --mail-type=ALL
#SBATCH --time=15:00:00

source ~/.bashrc
conda activate PICOX_conversion
python main.py -g
conda deactivate
"""

writeFile(f"jobs/get_data.sh",get_data)