cardiotensor/CITATION.cff at main · JosephBrunet/cardiotensor · GitHub

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cff-version: 1.2.0
message: "If you use this software, please cite it using the metadata below."

title: "Cardiotensor: A Python Library for Orientation Analysis and Tractography in 3D Cardiac Imaging"

type: software

authors:
  - family-names: "Brunet"
    given-names: "Joseph"
    orcid: "https://orcid.org/0000-0002-8424-9510"
    affiliation: "Department of Mechanical Engineering, University College London, London, UK; European Synchrotron Radiation Facility, Grenoble, France"

  - family-names: "Chestnutt"
    given-names: "Lisa"
    orcid: "https://orcid.org/0009-0008-0783-7299"
    affiliation: "UCL Institute of Cardiovascular Science, London, UK"

  - family-names: "Chourrout"
    given-names: "Matthieu"
    orcid: "https://orcid.org/0000-0002-2282-6976"
    affiliation: "Department of Mechanical Engineering, University College London, London, UK"

  - family-names: "Dejea"
    given-names: "Hector"
    orcid: "https://orcid.org/0000-0003-2584-9812"
    affiliation: "European Synchrotron Radiation Facility, Grenoble, France"

  - family-names: "Sabarigirivasan"
    given-names: "Vaishnavi"
    orcid: "https://orcid.org/0000-0003-2550-6262"
    affiliation: "UCL Institute of Cardiovascular Science, London, UK; UCL Division of Medicine, University College London, London, UK"

  - family-names: "Lee"
    given-names: "Peter D."
    orcid: "https://orcid.org/0000-0002-3898-8881"
    affiliation: "Department of Mechanical Engineering, University College London, London, UK; Research Complex at Harwell, Didcot, UK"

  - family-names: "Cook"
    given-names: "Andrew C."
    orcid: "https://orcid.org/0000-0001-5079-7546"
    affiliation: "UCL Institute of Cardiovascular Science, London, UK"

keywords:
  - Python
  - cardiac imaging
  - structure tensor
  - orientation analysis
  - tractography
  - fiber architecture
  - synchrotron tomography

license: "MIT"

repository-code: "https://github.com/JosephBrunet/cardiotensor"
url: "https://github.com/JosephBrunet/cardiotensor"

abstract: >
  Cardiotensor is an open-source Python package designed to quantify 3D cardiomyocyte
  orientation in whole- or partial-heart imaging datasets. It provides scalable
  implementations of structure tensor analysis and tractography for teravoxel-scale
  datasets, enabling extraction of directional metrics such as helical angle (HA),
  intrusion angle (IA), and fractional anisotropy (FA).

version: "1.1.8"
date-released: 2026-04-06