A file set for pseudobulks. Pseudobulk sets represent the results of a computational analysis of multiple single cells that share a cell type.
| Name | Type | Description | Notes |
|---|---|---|---|
| is_on_anvil | bool | Indicates whether the data object has been submitted to AnVIL. | [optional] |
| doi | str | The Digital Object Identifier (DOI) associated with this object. | [optional] |
| input_file_sets | List[str] | The file set(s) required for this pseudobulking analysis. | [optional] |
| release_timestamp | str | The date the object was released. | [optional] |
| publications | List[str] | The publications associated with this object. | [optional] |
| documents | List[str] | Documents that provide additional information (not data file). | [optional] |
| lab | str | Lab associated with the submission. | [optional] |
| award | str | Grant associated with the submission. | [optional] |
| accession | str | A unique identifier to be used to reference the object prefixed with IGVF. | [optional] |
| alternate_accessions | List[str] | Accessions previously assigned to objects that have been merged with this object. | [optional] |
| collections | List[str] | Some samples are part of particular data collections. | [optional] |
| status | str | The status of the metadata object. | [optional] |
| revoke_detail | str | Explanation of why an object was transitioned to the revoked status. | [optional] |
| schema_version | str | The version of the JSON schema that the server uses to validate the object. | [optional] |
| uuid | str | The unique identifier associated with every object. | [optional] |
| notes | str | DACC internal notes. | [optional] |
| aliases | List[str] | Lab specific identifiers to reference an object. | [optional] |
| creation_timestamp | str | The date the object was created. | [optional] |
| submitted_by | str | The user who submitted the object. | [optional] |
| submitter_comment | str | Additional information specified by the submitter to be displayed as a comment on the portal. | [optional] |
| description | str | A plain text description of the object. | [optional] |
| dbxrefs | List[str] | Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF file sets. | [optional] |
| samples | List[str] | The sample(s) from which the cells in this pseudobulk originated. | [optional] |
| donors | List[str] | The donor(s) associated with this file set. | [optional] |
| file_set_type | str | The level of this analysis set. | [optional] |
| supersedes | List[str] | The file set(s) that this file set supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes. | [optional] |
| cell_type | str | The ontology term that describes the cell type of the cells in this pseudobulk. | [optional] |
| cell_qualifier | str | A qualifier that provides additional detail about the cell type annotation or the source biosample. | [optional] |
| id | str | [optional] | |
| type | List[str] | [optional] | |
| summary | str | [optional] | |
| files | List[str] | The files associated with this file set. | [optional] |
| control_for | List[str] | The file sets for which this file set is a control. | [optional] |
| superseded_by | List[str] | File set(s) this file set is superseded by virtue of those file set(s) being newer, better, or a fixed version of etc. than this one. | [optional] |
| submitted_files_timestamp | str | The timestamp the first file object in the file_set or associated auxiliary sets was created. | [optional] |
| input_for | List[str] | The file sets that use this file set as an input. | [optional] |
| construct_library_sets | List[str] | The construct library sets associated with the samples of this file set. | [optional] |
| data_use_limitation_summaries | List[str] | The data use limitation summaries of institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] |
| controlled_access | bool | The controlled access of the institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] |
| workflows | List[str] | A workflow for computational analysis of genomic data. A workflow is made up of analysis steps. | [optional] |
| preferred_assay_titles | List[str] | Preferred Assay Title(s) of assays that produced data analyzed in the pseudobulk set. | [optional] |
| assay_titles | List[str] | Ontology term names from Ontology of Biomedical Investigations (OBI) for assays. | [optional] |
| assay_slims | List[str] | A broad categorization of the assay term. | [optional] |
from igvf_client.models.pseudobulk_set import PseudobulkSet
# TODO update the JSON string below
json = "{}"
# create an instance of PseudobulkSet from a JSON string
pseudobulk_set_instance = PseudobulkSet.from_json(json)
# print the JSON string representation of the object
print(PseudobulkSet.to_json())
# convert the object into a dict
pseudobulk_set_dict = pseudobulk_set_instance.to_dict()
# create an instance of PseudobulkSet from a dict
pseudobulk_set_from_dict = PseudobulkSet.from_dict(pseudobulk_set_dict)