update-version-105.0.0

Author: keenangraham

README.md

@@ -5,8 +5,8 @@ The Python client is autogenerated based on this [IGVF OpenAPI specification](ht
 
 *Note while the API endpoints are relatively stable, the underlying data model is still evolving, and changing fields/types can cause breaking changes. The latest version of the client reflects the latest version of the schema used by the API.*
 
-- API version: 104.0.0
-- Package version: 104.0.0
+- API version: 105.0.0
+- Package version: 105.0.0
 - Generator version: 7.8.0
 - Build package: org.openapitools.codegen.languages.PythonClientCodegen
 

docs/AnalysisSet.md

@@ -6,6 +6,7 @@ A file set for analyses. Analysis sets represent the results of a computational
 
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
+**doi** | **str** | The Digital Object Identifier (DOI) associated with this object. | [optional] 
 **preview_timestamp** | **str** | The date the object was previewed. | [optional] 
 **input_file_sets** | **List[str]** | The file set(s) required for this analysis. | [optional] 
 **release_timestamp** | **str** | The date the object was released. | [optional] 
@@ -46,7 +47,6 @@ Name | Type | Description | Notes
 **construct_library_sets** | **List[str]** | The construct library sets associated with the samples of this file set. | [optional] 
 **data_use_limitation_summaries** | **List[str]** | The data use limitation summaries of institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] 
 **controlled_access** | **bool** | The controlled access of the institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] 
-**is_on_anvil** | **bool** | Indicates whether this file set has been submitted to AnVIL. | [optional] 
 **preferred_assay_titles** | **List[str]** | Preferred Assay Title(s) of assays that produced data analyzed in the analysis set. | [optional] 
 **assay_titles** | **List[str]** | Ontology term names from Ontology of Biomedical Investigations (OBI) for assays | [optional] 
 **protocols** | **List[str]** | Links to the protocol(s) for conducting the assay on Protocols.io. | [optional] 

docs/AsyncIgvfApi.md

@@ -6,6 +6,7 @@ Auxiliary set is a file set that hosts raw data files (e.g. FASTQs) resulting fr
 
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
+**doi** | **str** | The Digital Object Identifier (DOI) associated with this object. | [optional] 
 **preview_timestamp** | **str** | The date the object was previewed. | [optional] 
 **release_timestamp** | **str** | The date the object was released. | [optional] 
 **publications** | **List[str]** | The publications associated with this object. | [optional] 
@@ -43,7 +44,6 @@ Name | Type | Description | Notes
 **construct_library_sets** | **List[str]** | The construct library sets associated with the samples of this file set. | [optional] 
 **data_use_limitation_summaries** | **List[str]** | The data use limitation summaries of institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] 
 **controlled_access** | **bool** | The controlled access of the institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] 
-**is_on_anvil** | **bool** | Indicates whether this file set has been submitted to AnVIL. | [optional] 
 **measurement_sets** | **List[str]** | The measurement sets that link to this auxiliary set. | [optional] 
 **preferred_assay_titles** | **List[str]** | The preferred assay titles of the measurement sets that used this auxiliary set. | [optional] 
 **assay_titles** | **List[str]** | Ontology term names from Ontology of Biomedical Investigations (OBI) for assays | [optional] 

docs/AuxiliarySet.md

@@ -6,6 +6,7 @@ Construct library set is a file set that hosts raw data files (e.g. FASTQs) resu
 
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
+**doi** | **str** | The Digital Object Identifier (DOI) associated with this object. | [optional] 
 **preview_timestamp** | **str** | The date the object was previewed. | [optional] 
 **control_file_sets** | **List[str]** | File sets that can serve as scientific controls for this file set. | [optional] 
 **small_scale_loci_list** | [**List[Locus1]**](Locus1.md) | A small scale (<=100) list of specific chromosomal region(s). | [optional] 
@@ -63,7 +64,6 @@ Name | Type | Description | Notes
 **construct_library_sets** | **List[str]** | The construct library sets associated with the samples of this file set. | [optional] 
 **data_use_limitation_summaries** | **List[str]** | The data use limitation summaries of institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] 
 **controlled_access** | **bool** | The controlled access of the institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] 
-**is_on_anvil** | **bool** | Indicates whether this file set has been submitted to AnVIL. | [optional] 
 **samples** | **List[str]** | The samples this construct library set was applied to. | [optional] 
 **file_sets** | **List[str]** | The file sets that used this construct library set. | [optional] 
 **preferred_assay_titles** | **List[str]** | The preferred assay titles of the file sets that used this construct library set. | [optional] 

docs/ConstructLibrarySet.md

@@ -43,7 +43,6 @@ Name | Type | Description | Notes
 **construct_library_sets** | **List[str]** | The construct library sets associated with the samples of this file set. | [optional] 
 **data_use_limitation_summaries** | **List[str]** | The data use limitation summaries of institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] 
 **controlled_access** | **bool** | The controlled access of the institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] 
-**is_on_anvil** | **bool** | Indicates whether this file set has been submitted to AnVIL. | [optional] 
 **assemblies** | **List[str]** | The genome assemblies to which the referencing files in the file set are utilizing (e.g., GRCh38). | [optional] 
 **transcriptome_annotations** | **List[str]** | The annotation versions of the reference resource. | [optional] 
 

docs/CuratedSet.md

@@ -32,7 +32,6 @@ Name | Type | Description | Notes
 **phenotypic_features** | **List[str]** | A list of associated phenotypic features of the donor. | [optional] 
 **virtual** | **bool** | Virtual donors are not representing actual human or model organism donors, samples coming from which were used in experiments, but rather capturing metadata about hypothetical donors that the reported analysis results are relevant for. | [optional] 
 **supersedes** | **List[str]** | The donor(s) that this donor supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes. | [optional] 
-**is_on_anvil** | **bool** | Indicates whether the donor has been submitted to AnVIL. | [optional] 
 **related_donors** | [**List[RelatedDonor]**](RelatedDonor.md) | Familial relations of this donor. | [optional] 
 **ethnicities** | **List[str]** | Ethnicity of the donor. | [optional] 
 **human_donor_identifiers** | **List[str]** | Identifiers of this human donor. | [optional] 

docs/HumanDonor.md

@@ -77,7 +77,6 @@ Name | Type | Description | Notes
 **origin_of** | **List[str]** | The samples which originate from this sample, such as through a process of cell differentiation. | [optional] 
 **institutional_certificates** | **List[str]** | The institutional certificates under which use of this sample is approved. | [optional] 
 **superseded_by** | **List[str]** | Sample(s) this sample is superseded by virtue of those sample(s) being newer, better, or a fixed version of etc. than this one. | [optional] 
-**is_on_anvil** | **bool** | Indicates whether the sample has been submitted to AnVIL. | [optional] 
 **sex** | **str** |  | [optional] 
 **age** | **str** | Age of organism at the time of collection of the sample. | [optional] 
 **upper_bound_age_in_hours** | **float** | Upper bound of age of organism in hours at the time of collection of the sample. | [optional] 

docs/InVitroSystem.md

@@ -66,7 +66,6 @@ Name | Type | Description | Notes
 **phenotypic_features** | **List[str]** | A list of associated phenotypic features of the donor. | [optional] 
 **virtual** | **bool** | Virtual samples are not representing actual physical entities from experiments, but rather capturing metadata about hypothetical samples that the reported analysis results are relevant for. | [optional] 
 **supersedes** | **List[str]** | The sample(s) that this sample supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes. | [optional] 
-**is_on_anvil** | **bool** | Indicates whether the sample has been submitted to AnVIL. | [optional] 
 **related_donors** | [**List[RelatedDonor]**](RelatedDonor.md) | Familial relations of this donor. | [optional] 
 **ethnicities** | **List[str]** | Ethnicity of the donor. | [optional] 
 **human_donor_identifiers** | **List[str]** | Identifiers of this human donor. | [optional] 
@@ -145,6 +144,7 @@ Name | Type | Description | Notes
 **start_view_position** | **str** | The 0-based coordinate for the default starting position when viewing the signal in a genome browser. | [optional] 
 **barcode_map_for** | **List[str]** | Link(s) to the Multiplexed samples using this file as barcode map. | [optional] 
 **primer_design_for** | **List[str]** | Link(s) to the MeasurementSets using this file as a primer design. | [optional] 
+**doi** | **str** | The Digital Object Identifier (DOI) associated with this object. | [optional] 
 **input_file_sets** | **List[str]** | The file set(s) required for this prediction set. | [optional] 
 **samples** | **List[str]** | The samples associated with this publication. | [optional] 
 **donors** | **List[str]** | Donor(s) the sample was derived from. | [optional] 

docs/Item.md

@@ -6,6 +6,7 @@ Measurement set is a file set that hosts raw data files (e.g. FASTQs) resulting
 
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
+**doi** | **str** | The Digital Object Identifier (DOI) associated with this object. | [optional] 
 **preferred_assay_titles** | **List[str]** | The custom lab preferred label for the experiment performed. | [optional] 
 **preview_timestamp** | **str** | The date the object was previewed. | [optional] 
 **control_file_sets** | **List[str]** | File sets that can serve as scientific controls for this file set. | [optional] 
@@ -58,7 +59,6 @@ Name | Type | Description | Notes
 **construct_library_sets** | **List[str]** | The construct library sets associated with the samples of this file set. | [optional] 
 **data_use_limitation_summaries** | **List[str]** | The data use limitation summaries of institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] 
 **controlled_access** | **bool** | The controlled access of the institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] 
-**is_on_anvil** | **bool** | Indicates whether this file set has been submitted to AnVIL. | [optional] 
 **assay_titles** | **List[str]** | Ontology term names from Ontology of Biomedical Investigations (OBI) for assays | [optional] 
 **related_measurement_sets** | [**List[RelatedMeasurementSetGroup]**](RelatedMeasurementSetGroup.md) | Measurement sets related to this one, grouped by relationship type. | [optional] 
 **externally_hosted** | **bool** |  | [optional]