MicroManagerExamplePipeline.cppipe

CellProfiler Pipeline: http://www.cellprofiler.org
Version:4
DateRevision:319
GitHash:
ModuleCount:13
HasImagePlaneDetails:False

Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:True|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    :\xff\xfe
    Filter images?:\xff\xfeI\x00m\x00a\x00g\x00e\x00s\x00 \x00o\x00n\x00l\x00y\x00
    Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00i\x00m\x00a\x00g\x00e\x00)\x00 \x00(\x00d\x00i\x00r\x00e\x00c\x00t\x00o\x00r\x00y\x00 \x00d\x00o\x00e\x00s\x00n\x00o\x00t\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00r\x00e\x00g\x00e\x00x\x00p\x00 \x00"\x00\x5B\x00\\\x00\\\x00\\\x00\\\x00/\x00\x5D\x00\\\x00\\\x00.\x00"\x00)\x00

Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:5|show_window:True|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\', \'\', \'First click the \\xe2\\x80\\x9cUpdate Metadata\\xe2\\x80\\x9d button in the top half of the module and then click the \\xe2\\x80\\x9cUpdate\\xe2\\x80\\x9d button on the table in the bottom half.\', \'After doing this, you should see the table populate with your images with a line per channel.\', \'\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Extract metadata?:\xff\xfeY\x00e\x00s\x00
    Metadata data type:\xff\xfeT\x00e\x00x\x00t\x00
    Metadata types:\xff\xfe{\x00}\x00
    Extraction method count:\xff\xfe1\x00
    Metadata extraction method:\xff\xfeE\x00x\x00t\x00r\x00a\x00c\x00t\x00 \x00f\x00r\x00o\x00m\x00 \x00i\x00m\x00a\x00g\x00e\x00 \x00f\x00i\x00l\x00e\x00 \x00h\x00e\x00a\x00d\x00e\x00r\x00s\x00
    Metadata source:\xff\xfeF\x00i\x00l\x00e\x00 \x00n\x00a\x00m\x00e\x00
    Regular expression to extract from file name:\xff\xfe^\x00(\x00?\x00P\x00<\x00P\x00l\x00a\x00t\x00e\x00>\x00.\x00*\x00)\x00_\x00(\x00?\x00P\x00<\x00W\x00e\x00l\x00l\x00>\x00\x5B\x00A\x00-\x00P\x00\x5D\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00_\x00s\x00(\x00?\x00P\x00<\x00S\x00i\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00_\x00w\x00(\x00?\x00P\x00<\x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00
    Regular expression to extract from folder name:\xff\xfe(\x00?\x00P\x00<\x00D\x00a\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x004\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00$\x00
    Extract metadata from:\xff\xfeA\x00l\x00l\x00 \x00i\x00m\x00a\x00g\x00e\x00s\x00
    Select the filtering criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00 \x00"\x00"\x00)\x00
    Metadata file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
    Match file and image metadata:\xff\xfe\x5B\x00\x5D\x00
    Use case insensitive matching?:\xff\xfeN\x00o\x00
    Metadata file name:\xff\xfeN\x00o\x00n\x00e\x00

NamesAndTypes:[module_num:3|svn_version:\'Unknown\'|variable_revision_number:8|show_window:True|notes:\x5B\'The NamesAndTypes module allows you to assign a meaningful name to each image by which other modules will refer to it.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Assign a name to:\xff\xfeI\x00m\x00a\x00g\x00e\x00s\x00 \x00m\x00a\x00t\x00c\x00h\x00i\x00n\x00g\x00 \x00r\x00u\x00l\x00e\x00s\x00
    Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
    Name to assign these images:\xff\xfeD\x00N\x00A\x00
    Match metadata:\xff\xfe\x5B\x00\x5D\x00
    Image set matching method:\xff\xfeO\x00r\x00d\x00e\x00r\x00
    Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
    Assignments count:\xff\xfe3\x00
    Single images count:\xff\xfe0\x00
    Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
    Process as 3D?:\xff\xfeN\x00o\x00
    Relative pixel spacing in X:\xff\xfe1\x00.\x000\x00
    Relative pixel spacing in Y:\xff\xfe1\x00.\x000\x00
    Relative pixel spacing in Z:\xff\xfe1\x00.\x000\x00
    Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00F\x00r\x00a\x00m\x00e\x00 \x00"\x000\x00"\x00)\x00
    Name to assign these images:\xff\xfeD\x00N\x00A\x00
    Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
    Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
    Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
    Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
    Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00F\x00r\x00a\x00m\x00e\x00 \x00"\x001\x00"\x00)\x00
    Name to assign these images:\xff\xfeG\x00r\x00e\x00e\x00n\x00
    Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
    Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
    Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
    Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
    Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00F\x00r\x00a\x00m\x00e\x00 \x00"\x002\x00"\x00)\x00
    Name to assign these images:\xff\xfeR\x00e\x00d\x00
    Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
    Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
    Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
    Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00

Groups:[module_num:4|svn_version:\'Unknown\'|variable_revision_number:2|show_window:True|notes:\x5B\'The Groups module optionally allows you to split your list of images into image subsets (groups) which will be processed independently of each other. Examples of groupings include screening batches, microtiter plates, time-lapse movies, etc.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Do you want to group your images?:\xff\xfeN\x00o\x00
    grouping metadata count:\xff\xfe1\x00
    Metadata category:\xff\xfeN\x00o\x00n\x00e\x00

IdentifyPrimaryObjects:[module_num:5|svn_version:\'Unknown\'|variable_revision_number:13|show_window:True|notes:\x5B\'This module is set up to detect  your nuclei. There are settings to change, the size filters, the thresholding, the separation of objects, among other. \', \'\', \'The main parameter you want to change is likely the "Typical Diameter of Objects" min and max settings as this is dependent on the microscope zoom level and camera you used. Press "Step". Once the window has turned up, zoom on a couple of cells and use the "Measure Length" tool in the "Tools" menu.. To do this click and drag across a length. Once you\\\'re done note the length in the bottom right of the window. THis is the diamter of this object that you need the mini\', \'\', \'\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Select the input image:\xff\xfeD\x00N\x00A\x00
    Name the primary objects to be identified:\xff\xfeN\x00u\x00c\x00l\x00e\x00i\x00
    Typical diameter of objects, in pixel units (Min,Max):\xff\xfe5\x000\x00,\x001\x005\x000\x00
    Discard objects outside the diameter range?:\xff\xfeY\x00e\x00s\x00
    Discard objects touching the border of the image?:\xff\xfeY\x00e\x00s\x00
    Method to distinguish clumped objects:\xff\xfeI\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00
    Method to draw dividing lines between clumped objects:\xff\xfeI\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00
    Size of smoothing filter:\xff\xfe1\x000\x00
    Suppress local maxima that are closer than this minimum allowed distance:\xff\xfe7\x00.\x000\x00
    Speed up by using lower-resolution image to find local maxima?:\xff\xfeY\x00e\x00s\x00
    Fill holes in identified objects?:\xff\xfeA\x00f\x00t\x00e\x00r\x00 \x00b\x00o\x00t\x00h\x00 \x00t\x00h\x00r\x00e\x00s\x00h\x00o\x00l\x00d\x00i\x00n\x00g\x00 \x00a\x00n\x00d\x00 \x00d\x00e\x00c\x00l\x00u\x00m\x00p\x00i\x00n\x00g\x00
    Automatically calculate size of smoothing filter for declumping?:\xff\xfeY\x00e\x00s\x00
    Automatically calculate minimum allowed distance between local maxima?:\xff\xfeY\x00e\x00s\x00
    Handling of objects if excessive number of objects identified:\xff\xfeC\x00o\x00n\x00t\x00i\x00n\x00u\x00e\x00
    Maximum number of objects:\xff\xfe5\x000\x000\x00
    Use advanced settings?:\xff\xfeY\x00e\x00s\x00
    Threshold setting version:\xff\xfe1\x000\x00
    Threshold strategy:\xff\xfeG\x00l\x00o\x00b\x00a\x00l\x00
    Thresholding method:\xff\xfeO\x00t\x00s\x00u\x00
    Threshold smoothing scale:\xff\xfe2\x00
    Threshold correction factor:\xff\xfe0\x00.\x008\x00
    Lower and upper bounds on threshold:\xff\xfe0\x00.\x000\x00,\x001\x00.\x000\x00
    Manual threshold:\xff\xfe0\x00.\x000\x00
    Select the measurement to threshold with:\xff\xfeN\x00o\x00n\x00e\x00
    Two-class or three-class thresholding?:\xff\xfeT\x00w\x00o\x00 \x00c\x00l\x00a\x00s\x00s\x00e\x00s\x00
    Assign pixels in the middle intensity class to the foreground or the background?:\xff\xfeF\x00o\x00r\x00e\x00g\x00r\x00o\x00u\x00n\x00d\x00
    Size of adaptive window:\xff\xfe5\x000\x00
    Lower outlier fraction:\xff\xfe0\x00.\x000\x005\x00
    Upper outlier fraction:\xff\xfe0\x00.\x000\x005\x00
    Averaging method:\xff\xfeM\x00e\x00a\x00n\x00
    Variance method:\xff\xfeS\x00t\x00a\x00n\x00d\x00a\x00r\x00d\x00 \x00d\x00e\x00v\x00i\x00a\x00t\x00i\x00o\x00n\x00
    # of deviations:\xff\xfe2\x00.\x000\x00
    Thresholding method:\xff\xfeO\x00t\x00s\x00u\x00

IdentifySecondaryObjects:[module_num:6|svn_version:\'Unknown\'|variable_revision_number:10|show_window:True|notes:\x5B\'This module is set up to "spread out" from your nuclei until a loss in intensity is found to end up with cell objects\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Select the input objects:\xff\xfeN\x00u\x00c\x00l\x00e\x00i\x00
    Name the objects to be identified:\xff\xfeC\x00e\x00l\x00l\x00
    Select the method to identify the secondary objects:\xff\xfeP\x00r\x00o\x00p\x00a\x00g\x00a\x00t\x00i\x00o\x00n\x00
    Select the input image:\xff\xfeR\x00e\x00d\x00
    Number of pixels by which to expand the primary objects:\xff\xfe1\x000\x00
    Regularization factor:\xff\xfe0\x00.\x000\x005\x00
    Discard secondary objects touching the border of the image?:\xff\xfeN\x00o\x00
    Discard the associated primary objects?:\xff\xfeN\x00o\x00
    Name the new primary objects:\xff\xfeF\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00N\x00u\x00c\x00l\x00e\x00i\x00
    Fill holes in identified objects?:\xff\xfeY\x00e\x00s\x00
    Threshold setting version:\xff\xfe1\x000\x00
    Threshold strategy:\xff\xfeG\x00l\x00o\x00b\x00a\x00l\x00
    Thresholding method:\xff\xfeM\x00i\x00n\x00i\x00m\x00u\x00m\x00 \x00c\x00r\x00o\x00s\x00s\x00 \x00e\x00n\x00t\x00r\x00o\x00p\x00y\x00
    Threshold smoothing scale:\xff\xfe0\x00.\x000\x00
    Threshold correction factor:\xff\xfe1\x00.\x000\x00
    Lower and upper bounds on threshold:\xff\xfe0\x00.\x000\x00,\x001\x00.\x000\x00
    Manual threshold:\xff\xfe0\x00.\x000\x00
    Select the measurement to threshold with:\xff\xfeN\x00o\x00n\x00e\x00
    Two-class or three-class thresholding?:\xff\xfeT\x00w\x00o\x00 \x00c\x00l\x00a\x00s\x00s\x00e\x00s\x00
    Assign pixels in the middle intensity class to the foreground or the background?:\xff\xfeF\x00o\x00r\x00e\x00g\x00r\x00o\x00u\x00n\x00d\x00
    Size of adaptive window:\xff\xfe5\x000\x00
    Lower outlier fraction:\xff\xfe0\x00.\x000\x005\x00
    Upper outlier fraction:\xff\xfe0\x00.\x000\x005\x00
    Averaging method:\xff\xfeM\x00e\x00a\x00n\x00
    Variance method:\xff\xfeS\x00t\x00a\x00n\x00d\x00a\x00r\x00d\x00 \x00d\x00e\x00v\x00i\x00a\x00t\x00i\x00o\x00n\x00
    # of deviations:\xff\xfe2\x00.\x000\x00
    Thresholding method:\xff\xfeO\x00t\x00s\x00u\x00

IdentifyTertiaryObjects:[module_num:7|svn_version:\'Unknown\'|variable_revision_number:3|show_window:True|notes:\x5B\'This module subtracts the nuclei objects from the matching cell objects to end up with objects representing the cytoplasm of the cells\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Select the larger identified objects:\xff\xfeC\x00e\x00l\x00l\x00
    Select the smaller identified objects:\xff\xfeN\x00u\x00c\x00l\x00e\x00i\x00
    Name the tertiary objects to be identified:\xff\xfeC\x00y\x00t\x00o\x00p\x00l\x00a\x00s\x00m\x00
    Shrink smaller object prior to subtraction?:\xff\xfeY\x00e\x00s\x00

MeasureObjectIntensity:[module_num:8|svn_version:\'Unknown\'|variable_revision_number:3|show_window:True|notes:\x5B\'This measures the intensity in the red and green channels in the nuclei and cytoplasm objects\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Hidden:\xff\xfe2\x00
    Select an image to measure:\xff\xfeG\x00r\x00e\x00e\x00n\x00
    Select an image to measure:\xff\xfeR\x00e\x00d\x00
    Select objects to measure:\xff\xfeN\x00u\x00c\x00l\x00e\x00i\x00
    Select objects to measure:\xff\xfeC\x00y\x00t\x00o\x00p\x00l\x00a\x00s\x00m\x00

MeasureObjectSizeShape:[module_num:9|svn_version:\'Unknown\'|variable_revision_number:1|show_window:True|notes:\x5B\'This module is set up to measure the size and shape of the below objects.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Select objects to measure:\xff\xfeN\x00u\x00c\x00l\x00e\x00i\x00
    Select objects to measure:\xff\xfeC\x00y\x00t\x00o\x00p\x00l\x00a\x00s\x00m\x00
    Select objects to measure:\xff\xfeC\x00e\x00l\x00l\x00
    Calculate the Zernike features?:\xff\xfeY\x00e\x00s\x00

GrayToColor:[module_num:10|svn_version:\'Unknown\'|variable_revision_number:3|show_window:True|notes:\x5B\'The module creates a composite image of your separate channels so the results of the segmentation can be assessed\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Select a color scheme:\xff\xfeR\x00G\x00B\x00
    Select the image to be colored red:\xff\xfeR\x00e\x00d\x00
    Select the image to be colored green:\xff\xfeG\x00r\x00e\x00e\x00n\x00
    Select the image to be colored blue:\xff\xfeD\x00N\x00A\x00
    Name the output image:\xff\xfeC\x00o\x00l\x00o\x00r\x00I\x00m\x00a\x00g\x00e\x00
    Relative weight for the red image:\xff\xfe1\x00.\x000\x00
    Relative weight for the green image:\xff\xfe1\x00.\x000\x00
    Relative weight for the blue image:\xff\xfe1\x00.\x000\x00
    Select the image to be colored cyan:\xff\xfeL\x00e\x00a\x00v\x00e\x00 \x00t\x00h\x00i\x00s\x00 \x00b\x00l\x00a\x00c\x00k\x00
    Select the image to be colored magenta:\xff\xfeL\x00e\x00a\x00v\x00e\x00 \x00t\x00h\x00i\x00s\x00 \x00b\x00l\x00a\x00c\x00k\x00
    Select the image to be colored yellow:\xff\xfeL\x00e\x00a\x00v\x00e\x00 \x00t\x00h\x00i\x00s\x00 \x00b\x00l\x00a\x00c\x00k\x00
    Select the image that determines brightness:\xff\xfeL\x00e\x00a\x00v\x00e\x00 \x00t\x00h\x00i\x00s\x00 \x00b\x00l\x00a\x00c\x00k\x00
    Relative weight for the cyan image:\xff\xfe1\x00.\x000\x00
    Relative weight for the magenta image:\xff\xfe1\x00.\x000\x00
    Relative weight for the yellow image:\xff\xfe1\x00.\x000\x00
    Relative weight for the brightness image:\xff\xfe1\x00.\x000\x00
    Hidden:\xff\xfe1\x00
    Image name:\xff\xfeN\x00o\x00n\x00e\x00
    Color:\xff\xfe#\x00f\x00f\x000\x000\x000\x000\x00
    Weight:\xff\xfe1\x00.\x000\x00

OverlayOutlines:[module_num:11|svn_version:\'Unknown\'|variable_revision_number:4|show_window:True|notes:\x5B\'This draws the outlines of the segmentation on your composite image.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Display outlines on a blank image?:\xff\xfeN\x00o\x00
    Select image on which to display outlines:\xff\xfeC\x00o\x00l\x00o\x00r\x00I\x00m\x00a\x00g\x00e\x00
    Name the output image:\xff\xfeO\x00r\x00i\x00g\x00O\x00v\x00e\x00r\x00l\x00a\x00y\x00
    Outline display mode:\xff\xfeC\x00o\x00l\x00o\x00r\x00
    Select method to determine brightness of outlines:\xff\xfeM\x00a\x00x\x00 \x00o\x00f\x00 \x00i\x00m\x00a\x00g\x00e\x00
    How to outline:\xff\xfeI\x00n\x00n\x00e\x00r\x00
    Select outline color:\xff\xfey\x00e\x00l\x00l\x00o\x00w\x00
    Select objects to display:\xff\xfeC\x00y\x00t\x00o\x00p\x00l\x00a\x00s\x00m\x00

SaveImages:[module_num:12|svn_version:\'Unknown\'|variable_revision_number:13|show_window:True|notes:\x5B\'This module saves the images created in OverlayOutlines\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Select the type of image to save:\xff\xfeI\x00m\x00a\x00g\x00e\x00
    Select the image to save:\xff\xfeO\x00r\x00i\x00g\x00O\x00v\x00e\x00r\x00l\x00a\x00y\x00
    Select method for constructing file names:\xff\xfeF\x00r\x00o\x00m\x00 \x00i\x00m\x00a\x00g\x00e\x00 \x00f\x00i\x00l\x00e\x00n\x00a\x00m\x00e\x00
    Select image name for file prefix:\xff\xfeD\x00N\x00A\x00
    Enter file prefix:\xff\xfe
    Number of digits:\xff\xfe4\x00
    Append a suffix to the image file name?:\xff\xfeY\x00e\x00s\x00
    Text to append to the image name:\xff\xfe_\x00O\x00v\x00e\x00r\x00l\x00a\x00y\x00
    Saved file format:\xff\xfet\x00i\x00f\x00f\x00
    Output file location:\xff\xfeD\x00e\x00f\x00a\x00u\x00l\x00t\x00 \x00O\x00u\x00t\x00p\x00u\x00t\x00 \x00F\x00o\x00l\x00d\x00e\x00r\x00\x7C\x00
    Image bit depth:\xff\xfe8\x00-\x00b\x00i\x00t\x00 \x00i\x00n\x00t\x00e\x00g\x00e\x00r\x00
    Overwrite existing files without warning?:\xff\xfeY\x00e\x00s\x00
    When to save:\xff\xfeE\x00v\x00e\x00r\x00y\x00 \x00c\x00y\x00c\x00l\x00e\x00
    Record the file and path information to the saved image?:\xff\xfeN\x00o\x00
    Create subfolders in the output folder?:\xff\xfeN\x00o\x00
    Base image folder:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00

ExportToSpreadsheet:[module_num:13|svn_version:\'Unknown\'|variable_revision_number:12|show_window:True|notes:\x5B\'By default, the CellProfiler measurement module measure a lot of different parameters and these are all output in the spreadsheet output. So as to not overwhelm you with measurments, this pipeline is just output mean intensity and area measurement. This is done by going to the "Press Button to Select Measurements" button below and ticking or unticking the desired measurements. If there is a measurement you want missing the look for it in there and tick it if you find it.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
    Select the column delimiter:\xff\xfeT\x00a\x00b\x00
    Add image metadata columns to your object data file?:\xff\xfeN\x00o\x00
    Select the measurements to export:\xff\xfeY\x00e\x00s\x00
    Calculate the per-image mean values for object measurements?:\xff\xfeY\x00e\x00s\x00
    Calculate the per-image median values for object measurements?:\xff\xfeN\x00o\x00
    Calculate the per-image standard deviation values for object measurements?:\xff\xfeN\x00o\x00
    Output file location:\xff\xfeD\x00e\x00f\x00a\x00u\x00l\x00t\x00 \x00O\x00u\x00t\x00p\x00u\x00t\x00 \x00F\x00o\x00l\x00d\x00e\x00r\x00\x7C\x00
    Create a GenePattern GCT file?:\xff\xfeN\x00o\x00
    Select source of sample row name:\xff\xfeM\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
    Select the image to use as the identifier:\xff\xfeN\x00o\x00n\x00e\x00
    Select the metadata to use as the identifier:\xff\xfeN\x00o\x00n\x00e\x00
    Export all measurement types?:\xff\xfeN\x00o\x00
    Press button to select measurements:\xff\xfeC\x00y\x00t\x00o\x00p\x00l\x00a\x00s\x00m\x00\x7C\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00_\x00M\x00e\x00a\x00n\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00_\x00R\x00e\x00d\x00,\x00C\x00y\x00t\x00o\x00p\x00l\x00a\x00s\x00m\x00\x7C\x00A\x00r\x00e\x00a\x00S\x00h\x00a\x00p\x00e\x00_\x00A\x00r\x00e\x00a\x00,\x00I\x00m\x00a\x00g\x00e\x00\x7C\x00C\x00o\x00u\x00n\x00t\x00_\x00C\x00e\x00l\x00l\x00,\x00I\x00m\x00a\x00g\x00e\x00\x7C\x00C\x00o\x00u\x00n\x00t\x00_\x00C\x00y\x00t\x00o\x00p\x00l\x00a\x00s\x00m\x00,\x00I\x00m\x00a\x00g\x00e\x00\x7C\x00C\x00o\x00u\x00n\x00t\x00_\x00N\x00u\x00c\x00l\x00e\x00i\x00,\x00I\x00m\x00a\x00g\x00e\x00\x7C\x00F\x00i\x00l\x00e\x00N\x00a\x00m\x00e\x00_\x00D\x00N\x00A\x00,\x00C\x00e\x00l\x00l\x00\x7C\x00A\x00r\x00e\x00a\x00S\x00h\x00a\x00p\x00e\x00_\x00A\x00r\x00e\x00a\x00,\x00N\x00u\x00c\x00l\x00e\x00i\x00\x7C\x00N\x00u\x00m\x00b\x00e\x00r\x00_\x00O\x00b\x00j\x00e\x00c\x00t\x00_\x00N\x00u\x00m\x00b\x00e\x00r\x00,\x00N\x00u\x00c\x00l\x00e\x00i\x00\x7C\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00_\x00M\x00e\x00a\x00n\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00_\x00G\x00r\x00e\x00e\x00n\x00,\x00N\x00u\x00c\x00l\x00e\x00i\x00\x7C\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00_\x00M\x00e\x00a\x00n\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00_\x00R\x00e\x00d\x00,\x00N\x00u\x00c\x00l\x00e\x00i\x00\x7C\x00A\x00r\x00e\x00a\x00S\x00h\x00a\x00p\x00e\x00_\x00A\x00r\x00e\x00a\x00
    Representation of Nan/Inf:\xff\xfeN\x00a\x00N\x00
    Add a prefix to file names?:\xff\xfeY\x00e\x00s\x00
    Filename prefix:\xff\xfeC\x00e\x00l\x00l\x00P\x00r\x00o\x00f\x00i\x00l\x00e\x00r\x00_\x00
    Overwrite existing files without warning?:\xff\xfeY\x00e\x00s\x00
    Data to export:\xff\xfeI\x00m\x00a\x00g\x00e\x00
    Combine these object measurements with those of the previous object?:\xff\xfeN\x00o\x00
    File name:\xff\xfeD\x00A\x00T\x00A\x00.\x00c\x00s\x00v\x00
    Use the object name for the file name?:\xff\xfeY\x00e\x00s\x00
    Data to export:\xff\xfeC\x00e\x00l\x00l\x00
    Combine these object measurements with those of the previous object?:\xff\xfeN\x00o\x00
    File name:\xff\xfeD\x00A\x00T\x00A\x00.\x00c\x00s\x00v\x00
    Use the object name for the file name?:\xff\xfeY\x00e\x00s\x00
    Data to export:\xff\xfeC\x00y\x00t\x00o\x00p\x00l\x00a\x00s\x00m\x00
    Combine these object measurements with those of the previous object?:\xff\xfeN\x00o\x00
    File name:\xff\xfeD\x00A\x00T\x00A\x00.\x00c\x00s\x00v\x00
    Use the object name for the file name?:\xff\xfeY\x00e\x00s\x00
    Data to export:\xff\xfeN\x00u\x00c\x00l\x00e\x00i\x00
    Combine these object measurements with those of the previous object?:\xff\xfeN\x00o\x00
    File name:\xff\xfeD\x00A\x00T\x00A\x00.\x00c\x00s\x00v\x00
    Use the object name for the file name?:\xff\xfeY\x00e\x00s\x00