how to install sctools

[zhq90]

The README file of sctools did not provide any installation proceduce to install the tool. The python pypi sctools only have old 0.1.6 version of sctools. Would you show how to install the lastest version sctools in linux computer?

[khajoue2]

We moved all of the python tools to C++. You can follow the Dockerfile instructions to manually install all required libraries in your linux machine and then compile the code in fastqprocessing directory and use the binary files. Here we have some examples of the programs we use to compute different metrics wrapped in wdl: https://github.com/broadinstitute/warp/blob/develop/tasks/skylab/Metrics.wdl