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This repository was archived by the owner on Nov 29, 2022. It is now read-only.

Commit 7ed7b3f

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HowcanoeWangHowcanoeWang
committed
Add Sector Sampling function
Also move JupyterNotebook part into github folder, but most of them were gitignored
1 parent b8bbb03 commit 7ed7b3f

6 files changed

Lines changed: 559 additions & 8 deletions

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‎.gitignore‎

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requirement.whl/*
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__pycache__/*
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textures/*
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*.mp4
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*.mp4
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Individual Tree/*_imgs/*
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Individual Tree/__pycache__/*
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Individual Tree/build/*
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Individual Tree/dist/*
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Individual Tree/releases/*

‎Individual Tree/ImgSector.R‎

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library(OpenImageR)
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sector.sample<-function(img=".\\COR R1 S00 0 16.jpg",sample.intensity=2,num.sectors=1,img.out="red COR R1 S00 0 16.jpg")
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{
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require("OpenImageR")
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IMG<-readImage(img)
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imageShow(IMG)
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Iwd<-dim(IMG)[2]
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Swd<-round(sample.intensity*Iwd/100/num.sectors,0)
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sector.mids<-sample(1:Iwd,size=num.sectors)
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print(sector.mids)
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for(i in sector.mids){
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Sbeg<-round(i-Swd/2,0)
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if(Sbeg<0){Sbeg<-Iwd+Sbeg}
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Send<-round(i+Swd/2,0)
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if(Send>Iwd){Send<-Send-Iwd}
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if(Sbeg<=2){ss<-seq(-Sbeg,0)}else{ss<-seq(-2,0)}
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IMG[,Sbeg+ss,1]<-1
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IMG[,Sbeg+ss,2]<-0
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IMG[,Sbeg+ss,3]<-0
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if(Iwd-Send<=2){ee<-seq(0,Iwd-Send)}else{ee<-seq(0,2)}
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IMG[,Send+ee,1]<-1
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IMG[,Send+ee,2]<-0
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IMG[,Send+ee,3]<-0
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}
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imageShow(IMG)
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writeImage(IMG,file=img.out)
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}
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library(imager)
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I<-load.image("C:\\Users\\dx542\\OneDrive\\Desktop\\Photo_NL16\\16only\\Cormack\\COR R1 S00 0 16.jpg")
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plot(I)
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#---------------------------------COR R1--------------------------------#
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sector.sample(img=".\\COR R1 S00 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S00 0 16.jpg")
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sector.sample(img=".\\COR R1 S00 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S00 1 16.jpg")
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sector.sample(img=".\\COR R1 S00 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S00 2 16.jpg")
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sector.sample(img=".\\COR R1 S12 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S12 0 16.jpg")
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sector.sample(img=".\\COR R1 S12 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S12 1 16.jpg")
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sector.sample(img=".\\COR R1 S12 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S12 2 16.jpg")
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sector.sample(img=".\\COR R1 S18 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S18 0 16.jpg")
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sector.sample(img=".\\COR R1 S18 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S18 1 16.jpg")
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sector.sample(img=".\\COR R1 S18 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S18 2 16.jpg")
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sector.sample(img=".\\COR R1 S24 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S24 0 16.jpg")
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sector.sample(img=".\\COR R1 S24 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S24 1 16.jpg")
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sector.sample(img=".\\COR R1 S24 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S24 2 16.jpg")
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sector.sample(img=".\\COR R1 S30 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S30 0 16.jpg")
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sector.sample(img=".\\COR R1 S30 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S30 1 16.jpg")
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sector.sample(img=".\\COR R1 S30 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R1 S30 2 16.jpg")
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#-----------------------------COR R2------------------------------------------#
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sector.sample(img=".\\COR R2 S00 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S00 0 16.jpg")
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sector.sample(img=".\\COR R2 S00 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S00 1 16.jpg")
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sector.sample(img=".\\COR R2 S00 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S00 2 16.jpg")
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sector.sample(img=".\\COR R2 S12 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S12 0 16.jpg")
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sector.sample(img=".\\COR R2 S12 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S12 1 16.jpg")
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sector.sample(img=".\\COR R2 S12 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S12 2 16.jpg")
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sector.sample(img=".\\COR R2 S18 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S18 0 16.jpg")
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sector.sample(img=".\\COR R2 S18 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S18 1 16.jpg")
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sector.sample(img=".\\COR R2 S18 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S18 2 16.jpg")
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sector.sample(img=".\\COR R2 S24 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S24 0 16.jpg")
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sector.sample(img=".\\COR R2 S24 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S24 1 16.jpg")
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sector.sample(img=".\\COR R2 S24 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S24 2 16.jpg")
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sector.sample(img=".\\COR R2 S30 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S30 0 16.jpg")
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sector.sample(img=".\\COR R2 S30 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S30 1 16.jpg")
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sector.sample(img=".\\COR R2 S30 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R2 S30 2 16.jpg")
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#-----------------------------COR R3------------------------------------------#
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sector.sample(img=".\\COR R3 S00 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S00 0 16.jpg")
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sector.sample(img=".\\COR R3 S00 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S00 1 16.jpg")
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sector.sample(img=".\\COR R3 S00 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S00 2 16.jpg")
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sector.sample(img=".\\COR R3 S12 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S12 0 16.jpg")
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sector.sample(img=".\\COR R3 S12 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S12 1 16.jpg")
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sector.sample(img=".\\COR R3 S12 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S12 2 16.jpg")
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sector.sample(img=".\\COR R3 S18 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S18 0 16.jpg")
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sector.sample(img=".\\COR R3 S18 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S18 1 16.jpg")
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sector.sample(img=".\\COR R3 S18 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S18 2 16.jpg")
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sector.sample(img=".\\COR R3 S24 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S24 0 16.jpg")
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sector.sample(img=".\\COR R3 S24 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S24 1 16.jpg")
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sector.sample(img=".\\COR R3 S24 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S24 2 16.jpg")
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sector.sample(img=".\\COR R3 S30 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S30 0 16.jpg")
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sector.sample(img=".\\COR R3 S30 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S30 1 16.jpg")
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sector.sample(img=".\\COR R3 S30 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red COR R3 S30 2 16.jpg")
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#---------------------------------PAS R1--------------------------------#
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sector.sample(img=".\\PAS R1 S00 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S00 0 16.jpg")
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sector.sample(img=".\\PAS R1 S00 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S00 1 16.jpg")
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sector.sample(img=".\\PAS R1 S00 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S00 2 16.jpg")
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sector.sample(img=".\\PAS R1 S12 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S12 0 16.jpg")
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sector.sample(img=".\\PAS R1 S12 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S12 1 16.jpg")
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sector.sample(img=".\\PAS R1 S12 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S12 2 16.jpg")
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sector.sample(img=".\\PAS R1 S18 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S18 0 16.jpg")
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sector.sample(img=".\\PAS R1 S18 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S18 1 16.jpg")
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sector.sample(img=".\\PAS R1 S18 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S18 2 16.jpg")
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sector.sample(img=".\\PAS R1 S24 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S24 0 16.jpg")
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sector.sample(img=".\\PAS R1 S24 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S24 1 16.jpg")
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sector.sample(img=".\\PAS R1 S24 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S24 2 16.jpg")
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sector.sample(img=".\\PAS R1 S30 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S30 0 16.jpg")
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sector.sample(img=".\\PAS R1 S30 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S30 1 16.jpg")
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sector.sample(img=".\\PAS R1 S30 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R1 S30 2 16.jpg")
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#-----------------------------PAS R2------------------------------------------#
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sector.sample(img=".\\PAS R2 S00 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S00 0 16.jpg")
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sector.sample(img=".\\PAS R2 S00 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S00 1 16.jpg")
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sector.sample(img=".\\PAS R2 S00 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S00 2 16.jpg")
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sector.sample(img=".\\PAS R2 S12 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S12 0 16.jpg")
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sector.sample(img=".\\PAS R2 S12 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S12 1 16.jpg")
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sector.sample(img=".\\PAS R2 S12 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S12 2 16.jpg")
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sector.sample(img=".\\PAS R2 S18 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S18 0 16.jpg")
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sector.sample(img=".\\PAS R2 S18 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S18 1 16.jpg")
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sector.sample(img=".\\PAS R2 S18 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S18 2 16.jpg")
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sector.sample(img=".\\PAS R2 S24 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S24 0 16.jpg")
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sector.sample(img=".\\PAS R2 S24 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S24 1 16.jpg")
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sector.sample(img=".\\PAS R2 S24 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S24 2 16.jpg")
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sector.sample(img=".\\PAS R2 S30 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S30 0 16.jpg")
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sector.sample(img=".\\PAS R2 S30 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S30 1 16.jpg")
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sector.sample(img=".\\PAS R2 S30 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R2 S30 2 16.jpg")
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#-----------------------------PAS R3------------------------------------------#
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sector.sample(img=".\\PAS R3 S00 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S00 0 16.jpg")
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sector.sample(img=".\\PAS R3 S00 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S00 1 16.jpg")
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sector.sample(img=".\\PAS R3 S00 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S00 2 16.jpg")
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sector.sample(img=".\\PAS R3 S12 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S12 0 16.jpg")
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sector.sample(img=".\\PAS R3 S12 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S12 1 16.jpg")
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sector.sample(img=".\\PAS R3 S12 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S12 2 16.jpg")
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sector.sample(img=".\\PAS R3 S18 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S18 0 16.jpg")
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sector.sample(img=".\\PAS R3 S18 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S18 1 16.jpg")
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sector.sample(img=".\\PAS R3 S18 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S18 2 16.jpg")
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sector.sample(img=".\\PAS R3 S24 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S24 0 16.jpg")
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sector.sample(img=".\\PAS R3 S24 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S24 1 16.jpg")
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sector.sample(img=".\\PAS R3 S24 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S24 2 16.jpg")
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sector.sample(img=".\\PAS R3 S30 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S30 0 16.jpg")
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sector.sample(img=".\\PAS R3 S30 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S30 1 16.jpg")
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sector.sample(img=".\\PAS R3 S30 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red PAS R3 S30 2 16.jpg")
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#---------------------------------ROD R1--------------------------------#
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sector.sample(img=".\\ROD R1 S00 0 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S00 0 16.jpg")
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sector.sample(img=".\\ROD R1 S00 1 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S00 1 16.jpg")
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sector.sample(img=".\\ROD R1 S00 2 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S00 2 16.jpg")
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sector.sample(img=".\\ROD R1 S12 0 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S12 0 16.jpg")
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sector.sample(img=".\\ROD R1 S12 1 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S12 1 16.jpg")
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sector.sample(img=".\\ROD R1 S12 2 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S12 2 16.jpg")
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sector.sample(img=".\\ROD R1 S18 0 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S18 0 16.jpg")
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sector.sample(img=".\\ROD R1 S18 1 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S18 1 16.jpg")
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sector.sample(img=".\\ROD R1 S18 2 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S18 2 16.jpg")
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sector.sample(img=".\\ROD R1 S24 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S24 0 16.jpg")
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sector.sample(img=".\\ROD R1 S24 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S24 1 16.jpg")
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sector.sample(img=".\\ROD R1 S24 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S24 2 16.jpg")
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sector.sample(img=".\\ROD R1 S30 0 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S30 0 16.jpg")
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sector.sample(img=".\\ROD R1 S30 1 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S30 1 16.jpg")
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sector.sample(img=".\\ROD R1 S30 2 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R1 S30 2 16.jpg")
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#-----------------------------ROD R2------------------------------------------#
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sector.sample(img=".\\ROD R2 S00 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S00 0 16.jpg")
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sector.sample(img=".\\ROD R2 S00 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S00 1 16.jpg")
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sector.sample(img=".\\ROD R2 S00 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S00 2 16.jpg")
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sector.sample(img=".\\ROD R2 S12 0 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S12 0 16.jpg")
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sector.sample(img=".\\ROD R2 S12 1 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S12 1 16.jpg")
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sector.sample(img=".\\ROD R2 S12 2 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S12 2 16.jpg")
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sector.sample(img=".\\ROD R2 S18 0 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S18 0 16.jpg")
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sector.sample(img=".\\ROD R2 S18 1 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S18 1 16.jpg")
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sector.sample(img=".\\ROD R2 S18 2 16 A20.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S18 2 16.jpg")
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sector.sample(img=".\\ROD R2 S24 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S24 0 16.jpg")
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sector.sample(img=".\\ROD R2 S24 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S24 1 16.jpg")
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sector.sample(img=".\\ROD R2 S24 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S24 2 16.jpg")
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sector.sample(img=".\\ROD R2 S30 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S30 0 16.jpg")
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sector.sample(img=".\\ROD R2 S30 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S30 1 16.jpg")
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sector.sample(img=".\\ROD R2 S30 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R2 S30 2 16.jpg")
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#-----------------------------ROD R3------------------------------------------#
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sector.sample(img=".\\ROD R3 S00 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S00 0 16.jpg")
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sector.sample(img=".\\ROD R3 S00 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S00 1 16.jpg")
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sector.sample(img=".\\ROD R3 S00 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S00 2 16.jpg")
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sector.sample(img=".\\ROD R3 S12 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S12 0 16.jpg")
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sector.sample(img=".\\ROD R3 S12 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S12 1 16.jpg")
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sector.sample(img=".\\ROD R3 S12 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S12 2 16.jpg")
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sector.sample(img=".\\ROD R3 S18 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S18 0 16.jpg")
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sector.sample(img=".\\ROD R3 S18 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S18 1 16.jpg")
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sector.sample(img=".\\ROD R3 S18 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S18 2 16.jpg")
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sector.sample(img=".\\ROD R3 S24 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S24 0 16.jpg")
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sector.sample(img=".\\ROD R3 S24 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S24 1 16.jpg")
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sector.sample(img=".\\ROD R3 S24 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S24 2 16.jpg")
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sector.sample(img=".\\ROD R3 S30 0 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S30 0 16.jpg")
281+
sector.sample(img=".\\ROD R3 S30 1 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S30 1 16.jpg")
282+
sector.sample(img=".\\ROD R3 S30 2 16.jpg",sample.intensity=5,num.sectors=1,img.out="red ROD R3 S30 2 16.jpg")
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