switch docker containers

cjfields · cjfields · commit 780a48c7ca5b · 2025-11-19T23:14:16.000-06:00
diff --git a/modules/local/assigntaxaspecies.nf b/modules/local/assigntaxaspecies.nf
@@ -1,7 +1,7 @@
 process DADA2_ASSIGN_TAXA_SPECIES {
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(st)
diff --git a/modules/local/biom.nf b/modules/local/biom.nf
@@ -1,7 +1,7 @@
 process BIOM {
     label 'process_low'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(seqtab) 
diff --git a/modules/local/dada2derepseqs/main.nf b/modules/local/dada2derepseqs/main.nf
@@ -2,7 +2,7 @@ process DADA2_DEREP_SEQS {
     tag "$meta.id"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(meta), path(reads)
diff --git a/modules/local/dadainfer.nf b/modules/local/dadainfer.nf
@@ -2,7 +2,7 @@ process DADA2_POOLED_INFER {
     tag "${readmode}: ${params.pool}"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(readmode), path(err), path(dereps)
diff --git a/modules/local/decipher.nf b/modules/local/decipher.nf
@@ -1,7 +1,7 @@
 process DECIPHER {
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(seqs)
diff --git a/modules/local/filterandtrim.nf b/modules/local/filterandtrim.nf
@@ -2,7 +2,7 @@ process ILLUMINA_DADA2_FILTER_AND_TRIM {
     tag "$meta.id"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(meta), path(reads)
@@ -58,7 +58,7 @@ process ILLUMINA_DADA2_FILTER_AND_TRIM {
 process PACBIO_CUTADAPT_FILTER_AND_TRIM {
     tag { "PacBioTrim_${meta.id}" }
 
-    // container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    // container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     // TODO: Note the channel name here should probably be changed
@@ -95,7 +95,7 @@ process PACBIO_DADA2_FILTER_AND_TRIM {
     tag "$meta.id"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(meta), path(reads)
diff --git a/modules/local/illumina_filterandtrim.nf b/modules/local/illumina_filterandtrim.nf
@@ -2,7 +2,7 @@ process ILLUMINA_DADA2_FILTER_AND_TRIM {
     tag "$meta.id"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(meta), path(reads)
diff --git a/modules/local/illumina_learnerrors.nf b/modules/local/illumina_learnerrors.nf
@@ -3,7 +3,7 @@ process ILLUMINA_DADA2_LEARN_ERRORS {
     tag "$readmode"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(readmode), file(reads)
diff --git a/modules/local/learnerrors/main.nf b/modules/local/learnerrors/main.nf
@@ -2,7 +2,7 @@ process DADA2_LEARN_ERRORS {
     tag "${params.platform} ${params.learnerrors_function} ${readmode}"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(readmode), path(reads)
diff --git a/modules/local/mergeoverlapcheck.nf b/modules/local/mergeoverlapcheck.nf
@@ -2,7 +2,7 @@ process MERGE_OVERLAP_CHECK {
     tag 'Overlap Stats'
     label 'process_single'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(logs)
diff --git a/modules/local/mergetrimtables.nf b/modules/local/mergetrimtables.nf
@@ -1,7 +1,7 @@
 process MERGE_TRIM_TABLES {
     label 'process_low'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(trimData)
diff --git a/modules/local/overlapheatmap.nf b/modules/local/overlapheatmap.nf
@@ -2,7 +2,7 @@ process OVERLAP_HEATMAP {
     tag "Overlap Heatmap"
     label 'process_single'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(merged_tables)
diff --git a/modules/local/pacbio_filterandtrim.nf b/modules/local/pacbio_filterandtrim.nf
@@ -2,7 +2,7 @@ process PACBIO_DADA2_FILTER_AND_TRIM {
     tag "$meta.id"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(meta), path(reads)
diff --git a/modules/local/pacbio_learnerrors.nf b/modules/local/pacbio_learnerrors.nf
@@ -3,7 +3,7 @@ process PACBIO_DADA2_LEARN_ERRORS {
     tag "$readmode"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(readmode), path(reads)
diff --git a/modules/local/persampleinfer/main.nf b/modules/local/persampleinfer/main.nf
@@ -2,7 +2,7 @@ process PER_SAMPLE_INFER {
     tag "$meta.id"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(meta), path(dereps)
diff --git a/modules/local/persampleinferderepmerge.nf b/modules/local/persampleinferderepmerge.nf
@@ -3,7 +3,7 @@ process PER_SAMPLE_INFER {
     tag "$meta.id"
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(meta), path(dereps)
diff --git a/modules/local/persamplemerge/main.nf b/modules/local/persamplemerge/main.nf
@@ -2,7 +2,7 @@ process PER_SAMPLE_MERGE {
     tag "$meta.id"
     label 'process_low'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(meta), path(dds), path(dereps)
diff --git a/modules/local/persamplemergedadards.nf b/modules/local/persamplemergedadards.nf
@@ -5,7 +5,7 @@
 // 2) to generate prior R1 and R2 (if present) sequences for later
 
 process PER_SAMPLE_MERGE {
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(dds)
diff --git a/modules/local/persampleseqtable/main.nf b/modules/local/persampleseqtable/main.nf
@@ -1,5 +1,5 @@
 process PER_SAMPLE_SEQTABLE {
-   container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+   container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
    input:
    path(combined_reads)
diff --git a/modules/local/persampletracking/main.nf b/modules/local/persampletracking/main.nf
@@ -1,7 +1,7 @@
 process PER_SAMPLE_TRACKING {
     label 'process_single'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(dds)
diff --git a/modules/local/phangorn.nf b/modules/local/phangorn.nf
@@ -1,7 +1,7 @@
 process PHANGORN {
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(aln)
diff --git a/modules/local/plotasvlen.nf b/modules/local/plotasvlen.nf
@@ -1,7 +1,7 @@
 process PLOT_ASV_DIST {
     label 'process_single'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(seqtab)
diff --git a/modules/local/plotmerged.nf b/modules/local/plotmerged.nf
@@ -1,7 +1,7 @@
 process PLOT_MERGED_HEATMAP {
     label 'process_low'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(mergers)
diff --git a/modules/local/plotqualityprofile.nf b/modules/local/plotqualityprofile.nf
@@ -3,7 +3,7 @@ process PLOT_QUALITY_PROFILE {
     label 'process_low'
 
     // TODO: pin to a versioned docker instance
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     tuple val(meta), path(reads)
diff --git a/modules/local/pooledseqtable.nf b/modules/local/pooledseqtable.nf
@@ -2,7 +2,7 @@
 process DADA2_POOLED_SEQTABLE {
    label 'process_medium'
 
-   container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+   container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
    input:
    path(dds)
diff --git a/modules/local/qiime2featuretords/main.nf b/modules/local/qiime2featuretords/main.nf
@@ -1,7 +1,7 @@
 process QIIME2_FEATURE_TO_RDS {
     label 'process_low'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(taxtab_qiime2_tsv)
diff --git a/modules/local/readmap2asv.nf b/modules/local/readmap2asv.nf
@@ -1,6 +1,6 @@
 process DADA2_READMAP2ASV {
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(readmap)
diff --git a/modules/local/readtracking.nf b/modules/local/readtracking.nf
@@ -1,7 +1,7 @@
 process READ_TRACKING {
     label 'process_low'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(tracking)
diff --git a/modules/local/removechimeras.nf b/modules/local/removechimeras.nf
@@ -1,7 +1,7 @@
 process DADA2_REMOVE_CHIMERAS {
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(st)
diff --git a/modules/local/renameasvs.nf b/modules/local/renameasvs.nf
@@ -1,7 +1,7 @@
 process RENAME_ASVS {
     label 'process_low'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(st)
diff --git a/modules/local/roottree.nf b/modules/local/roottree.nf
@@ -1,7 +1,7 @@
 process ROOT_TREE {
     label 'process_medium'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(tree)
diff --git a/modules/local/rsessioninfo.nf b/modules/local/rsessioninfo.nf
@@ -2,7 +2,7 @@ process SESSION_INFO {
 
     label 'process_low'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     output:
     path "sessionInfo.Rmd", emit: session_info
diff --git a/modules/local/seqtable2txt.nf b/modules/local/seqtable2txt.nf
@@ -1,6 +1,6 @@
 process DADA2_SEQTABLE2TEXT {
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(seqtab)
diff --git a/modules/local/taxfilter/main.nf b/modules/local/taxfilter/main.nf
@@ -2,7 +2,7 @@ process TAXFILTER {
     tag "tax_filter:${params.tax_filter_rank}"
     label 'process_single'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path readmap
diff --git a/modules/local/taxonomyqc/main.nf b/modules/local/taxonomyqc/main.nf
@@ -1,7 +1,7 @@
 process TAXONOMY_QC {
     label 'process_low'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(taxtab_rds)
diff --git a/modules/local/taxtable2txt.nf b/modules/local/taxtable2txt.nf
@@ -1,6 +1,6 @@
 process DADA2_TAXTABLE2TEXT {
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(taxtab_rds)
diff --git a/subworkflows/local/mmseqs_profile_filter/main.nf b/subworkflows/local/mmseqs_profile_filter/main.nf
@@ -42,7 +42,7 @@ process FILTER_TADA_DATA {
     tag "FILTER_TADA_DATA"
     label 'process_low'
 
-    container "ghcr.io/h3abionet/tada:docker-DADA-1.36"
+    container "ghcr.io/hpcbio/tada:docker-DADA-1.36"
 
     input:
     path(seqtab)
