From 82e0e5200d5fbadaed63b5f3542351384e1bb631 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 2 Feb 2026 15:26:29 +0000
Subject: [PATCH] chore(deps): bump the dependencies group across 1 directory
 with 6 updates

Updates the requirements on [thiserror](https://github.com/dtolnay/thiserror), [nalgebra](https://github.com/dimforge/nalgebra), [itertools](https://github.com/rust-itertools/itertools), [reqwest](https://github.com/seanmonstar/reqwest), [criterion](https://github.com/criterion-rs/criterion.rs) and [pyo3](https://github.com/pyo3/pyo3) to permit the latest version.

Updates `thiserror` to 2.0.18
- [Release notes](https://github.com/dtolnay/thiserror/releases)
- [Commits](https://github.com/dtolnay/thiserror/compare/1.0.0...2.0.18)

Updates `nalgebra` to 0.34.1
- [Changelog](https://github.com/dimforge/nalgebra/blob/main/CHANGELOG.md)
- [Commits](https://github.com/dimforge/nalgebra/compare/v0.32.0...v0.34.1)

Updates `itertools` to 0.14.0
- [Changelog](https://github.com/rust-itertools/itertools/blob/master/CHANGELOG.md)
- [Commits](https://github.com/rust-itertools/itertools/compare/v0.12.0...v0.14.0)

Updates `reqwest` to 0.13.1
- [Release notes](https://github.com/seanmonstar/reqwest/releases)
- [Changelog](https://github.com/seanmonstar/reqwest/blob/master/CHANGELOG.md)
- [Commits](https://github.com/seanmonstar/reqwest/compare/v0.12.0...v0.13.1)

Updates `criterion` to 0.8.1
- [Release notes](https://github.com/criterion-rs/criterion.rs/releases)
- [Changelog](https://github.com/criterion-rs/criterion.rs/blob/master/CHANGELOG.md)
- [Commits](https://github.com/criterion-rs/criterion.rs/compare/0.5.0...criterion-v0.8.1)

Updates `pyo3` to 0.22.6
- [Release notes](https://github.com/pyo3/pyo3/releases)
- [Changelog](https://github.com/PyO3/pyo3/blob/v0.22.6/CHANGELOG.md)
- [Commits](https://github.com/pyo3/pyo3/compare/v0.22.0...v0.22.6)

---
updated-dependencies:
- dependency-name: thiserror
  dependency-version: 2.0.18
  dependency-type: direct:production
  dependency-group: dependencies
- dependency-name: nalgebra
  dependency-version: 0.34.1
  dependency-type: direct:production
  dependency-group: dependencies
- dependency-name: itertools
  dependency-version: 0.14.0
  dependency-type: direct:production
  dependency-group: dependencies
- dependency-name: reqwest
  dependency-version: 0.13.1
  dependency-type: direct:production
  dependency-group: dependencies
- dependency-name: criterion
  dependency-version: 0.8.1
  dependency-type: direct:production
  dependency-group: dependencies
- dependency-name: pyo3
  dependency-version: 0.22.6
  dependency-type: direct:production
  dependency-group: dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Cargo.toml                | 10 +++++-----
 pdbrust-python/Cargo.toml |  2 +-
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/Cargo.toml b/Cargo.toml
index 446b56c..28bb3d0 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -27,11 +27,11 @@ categories = [
 readme = "README.md"
 
 [dependencies]
-thiserror = "1.0"
+thiserror = "2.0"
 rayon = { version = "1.8", optional = true }
-nalgebra = { version = "0.32", optional = true }
-itertools = "0.12"
-reqwest = { version = "0.12", features = ["json", "blocking"], optional = true }
+nalgebra = { version = "0.34", optional = true }
+itertools = "0.14"
+reqwest = { version = "0.13", features = ["json", "blocking"], optional = true }
 serde = { version = "1.0", features = ["derive"], optional = true }
 serde_json = { version = "1.0", optional = true }
 flate2 = { version = "1.0", optional = true }
@@ -39,7 +39,7 @@ tokio = { version = "1.0", features = ["rt-multi-thread", "sync", "time", "fs",
 futures = { version = "0.3", optional = true }
 
 [dev-dependencies]
-criterion = "0.5"
+criterion = "0.8"
 proptest = "1.4"
 tempfile = "3.9"
 codecov = "0.4"
diff --git a/pdbrust-python/Cargo.toml b/pdbrust-python/Cargo.toml
index 4209420..0a2d3a0 100644
--- a/pdbrust-python/Cargo.toml
+++ b/pdbrust-python/Cargo.toml
@@ -16,7 +16,7 @@ name = "_pdbrust"
 crate-type = ["cdylib"]
 
 [dependencies]
-pyo3 = { version = "0.24", features = ["extension-module"] }
+pyo3 = { version = "0.28", features = ["extension-module"] }
 pdbrust = { path = "..", features = ["filter", "descriptors", "quality", "summary", "gzip", "geometry", "dssp", "ligand-quality"] }
 numpy = { version = "0.24", optional = true }
 tokio = { version = "1.0", features = ["rt-multi-thread"], optional = true }