Hi team!
I am trying to run Isosceles on my data, but I would rather not reprocess the BAM files again. I already have transcript counts from oarfish for each cell and a GTF file.
I've been trying to get the scripts to work based on this instead but I am having some difficulty. My code is failing for the function transcript_to_psi() but I have likely missed a step somewhere.
Is there any chance of making the program more widely applicable?
Thanks for any help!
Hi team!
I am trying to run Isosceles on my data, but I would rather not reprocess the BAM files again. I already have transcript counts from oarfish for each cell and a GTF file.
I've been trying to get the scripts to work based on this instead but I am having some difficulty. My code is failing for the function transcript_to_psi() but I have likely missed a step somewhere.
Is there any chance of making the program more widely applicable?
Thanks for any help!