islet-genomics.md

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Islet Genomics

<title>Pancreatic Islet Gene Regulation Study</title> <style> h2, h3 { color: #333366; } p { margin-bottom: 1px; font-size: 12px; } ul { list-style-type: none; padding: 0; } li { margin-bottom: 8px; } .link { color: #1a0dab; text-decoration: none; } .link:hover { text-decoration: underline; } img { margin-bottom: 1px; float: left; margin-right: 2px; } .section { margin-top: 1px; } .flex-container { display: flex; align-items: flex-start; } .flex-item { margin-right: 2px; } .clear { clear: both; } </style>

This site hosts data and resources for studying gene regulation in human pancreatic islet cell types.

Islet HPAP Gene Expression Map

Applications

• Cellxgene
• Shinycell
• Azimuth
• Expression
• Differential Expression

Files & Annotations

• R object
• Annotation
• Data in CMDGA

Pipelines

• GitHub

Help

If you encounter a bug or have a feature request, please open an issue.

Citation

Ruth M Elgamal, Parul Kudtarkar, Rebecca L Melton, Hannah M Mummey, Paola Benaglio, Mei-Lin Okino, Kyle J Gaulton; An integrated map of cell type-specific gene expression in pancreatic islets. Diabetes 2023; db230130. https://doi.org/10.2337/db23-0130

Islet HPAP Chromatin Accessibility Map

Applications

• Cellxgene
• Shinycell
• Motif Browser
• UCSC Browser for cell type specific peaks
• Differential Peaks Browser

Pipelines

• GitHub
• Docker
• Nextflow

Help

If you encounter a bug or have a feature request, please open an issue.

Citation