How are genomic features extracted

[mhaiyue]

Hello

Great work!

I tried to extract genome feature ( mono-, di-, tri-, and tetra-nucleotide frequency) for Escherichia coli, k=1 mostly matched, but k=2/3/4 do not match genome feature from data/Genomic_featrues/genome_features.pt.

Could you please share the details?

Escherichia coli genome is downloaded from NCBI: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/005/845/GCA_000005845.2_ASM584v2/GCA_000005845.2_ASM584v2_genomic.fna.gz

[1-1-zz]

Hello! May I ask if you’ve resolved this issue? I’m encountering the same problem as well.