magnify/pyproject.toml at main · FordyceLab/magnify · GitHub

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[project]
name = "magnify"
version = "0.12.5"
description = "A microscopy image processing toolkit."
authors = [
  { name = "Karl Krauth", email = "karl.krauth@gmail.com" },
  { name = "Xinxian Tian", email = "cicitian887@gmail.com" },
]
readme = "README.md"
requires-python = ">=3.11"

dependencies = [
  "beautifulsoup4>=4.10.0",
  "catalogue>=2.0.8",
  "confection>=0.0.4",
  "dask[complete]>=2025.02.0",
  "dask_image>=2024.5.3",
  "opencv-python-headless>=4.0",
  "lxml>=5.0.0",
  "matplotlib>=3.9.0",
  "napari>=0.5.0",
  "numba>=0.58.1",
  "numpy>=1.22.0",
  "pyqt6>=6.10.0",
  "scipy>=1.9.0",
  "pandas>=2.3.3",
  "plotly>=5.18.0",
  "tifffile>=2021.11.2",
  "scikit-learn>=1.2.0",
  "tqdm>=4.64",
  "types-tqdm>=4.64",
  "xarray[io]>=2025.10.0",
  "zarr >= 3.0.0",
]

[dependency-groups]
dev = [
  "ipython>=9.6.0",
  "jupyter>=1.1.1",
  "jupyterlab>=4.0.0",
  "mkdocs-material>=9.7.0",
  "mkdocstrings[python]>=0.30.1",
  "mypy>=1.0.1",
  "pre-commit>=4.0.0",
  "pytest>=7.1.2",
  "ruff>=0.0.249",
]

[build-system]
requires = ["uv_build>=0.9.5"]
build-backend = "uv_build"

[tool.ruff]
line-length = 100
target-version = "py312"

[tool.ruff.lint]
select = [
  # pycodestyle
  "E",
  "W",
  # Pyflakes
  "F",
  # pyupgrade
  "UP",
  # flake8-bugbear
  "B",
  # flake8-simplify
  "SIM",
  # isort
  "I",
]

[tool.ruff.format]
docstring-code-format = true