README.Rmd

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# README

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### Chick Embryo Elongation Data Analysis

#### Content

The `chick_elong_paper` repository holds the data analyses code applied to the chick embryo measurements in early development, including:

- the raw data (input);   
- analyses scripts (using literate programming with Rmarkdown notebooks)
- results and data visualization.


### Citation

##### Scientific article

Title | A Morphometric Characterization of Early Chick Embryo Elongation   
Authors | A.C. Maia-Fernandes; Tomas Pais-de-Azevedo; Sara Ramalhete; Gabriel Martins; Isabel Palmeirim; Isabel Duarte; Paulo Martel; Ana Marreiros; Raquel P. Andrade   
*Submitted to Developmental Biology*   

##### Data repository

TBA (after manuscript publication).


### Reproducible data analysis

1. To **re-run the analysis**, run the code provided in the RMarkdown notebooks for each of the analysis performed: `chick_elong_[analysis_name].Rmd` files.


2. To just **inspect the data analysis performed**, please download and open in your favorite browser the `.html` files from each analysis: `chick_elong_[analysis_name].html` files.