diff --git a/README.md b/README.md index 4b1a274..6b86a70 100644 --- a/README.md +++ b/README.md @@ -3,6 +3,18 @@ Fast, accurate, and hassle-free contact prediction. ## Installation instructions: +Using conda: + + conda env create -f pconsc4_env.yml + conda activate pconsc4_env + pip install pconsc4 + export LD_LIBRARY_PATH="$CONDA_PREFIX/lib/:$LD_LIBRARY_PATH" + conda deactivate + + + +Using pip: + pip3 install numpy Cython pythran && pip3 install pconsc4 diff --git a/pconsc4_env.yml b/pconsc4_env.yml new file mode 100644 index 0000000..6e5febf --- /dev/null +++ b/pconsc4_env.yml @@ -0,0 +1,21 @@ +name: pconsc4_env +channels: + - defaults +dependencies: + - gcc_linux-64=7.5.0 + - gxx_linux-64=7.5.0 + - python=3.7 + - tensorflow=1.14.0 + - pip: + - beniget==0.2.1 + - cython==3.0.10 + - gast==0.3.3 + - h5py==2.10.0 + - keras==2.2.4 + - networkx==2.6.3 + - numpy==1.21.6 + - protobuf==3.20.3 + - pythran==0.9.5 + - scipy==1.7.3 + - setuptools==68.0.0 + - six==1.16.0