Update test.yml

Author: hangyinn

.github/workflows/test.yml

@@ -31,22 +31,9 @@ jobs:
         run: |
           ${{ env.pythonLocation }}/bin/python -m pip install --upgrade pip setuptools wheel
           ${{ env.pythonLocation }}/bin/python -m pip install pytest pytest-cov
-
-          # Core scientific stack
-          ${{ env.pythonLocation }}/bin/pip install numpy<2.0 scipy>=1.11,<1.16 pandas>=2.0,<3.0 matplotlib>=3.7,<3.11 \
-              scikit-image==0.19.3 tifffile==2021.11.2 networkx>=2.6,<3.0 \
-              seaborn>=0.13,<0.14 fastcluster==1.2.6
-
-          # Core dependencies
-          ${{ env.pythonLocation }}/bin/pip install imctools>=2.1.8 joblib>=1.2,<1.6 leidenalg>=0.10.2 \
-              python-louvain>=0.16 scanpy>=1.9,<1.12 bbknn>=1.6 \
-              numpy-groupies>=0.9,<0.12 parmap>=1.6,<2.0 \
-              seaborn-extensions>=0.2.0 outdated>=0.2.2 ordered-set>=4.1.0 \
-              urlpath>=1.2.0 PyYAML>=6.0
-
-          # Optional backends
-          ${{ env.pythonLocation }}/bin/pip install astir==0.1.5 DeepCell==0.12.6
-
+          ${{ env.pythonLocation }}/bin/pip install "numpy<2.0" "scipy>=1.11,<1.16" "pandas>=2.0,<3.0" "matplotlib>=3.7,<3.11" "scikit-image==0.19.3" "tifffile==2021.11.2" "networkx>=2.6,<3.0" "seaborn>=0.13,<0.14" "fastcluster==1.2.6"
+          ${{ env.pythonLocation }}/bin/pip install "imctools>=2.1.8" "joblib>=1.2,<1.6" "leidenalg>=0.10.2" "python-louvain>=0.16" "scanpy>=1.9,<1.12" "bbknn>=1.6" "numpy-groupies>=0.9,<0.12" "parmap>=1.6,<2.0" "seaborn-extensions>=0.2.0" "outdated>=0.2.2" "ordered-set>=4.1.0" "urlpath>=1.2.0" "PyYAML>=6.0"
+          ${{ env.pythonLocation }}/bin/pip install "astir==0.1.5" "DeepCell==0.12.6"
           ${{ env.pythonLocation }}/bin/pip install -e .
 
       - name: Test with pytest
@@ -80,14 +67,13 @@ jobs:
         run: |
           python -m pip install --upgrade pip setuptools wheel
           python -m pip install pytest pytest-cov
-
-          pip install numpy<2.0 scipy>=1.11,<1.16 pandas>=2.0,<3.0 matplotlib>=3.7,<3.11
-          pip install scikit-image==0.19.3 tifffile==2021.11.2 networkx>=2.6,<3.0
-          pip install seaborn>=0.13,<0.14 fastcluster==1.2.6
-          pip install imctools>=2.1.8 joblib>=1.2,<1.6 leidenalg>=0.10.2 python-louvain>=0.16
-          pip install scanpy>=1.9,<1.12 bbknn>=1.6 numpy-groupies>=0.9,<0.12 parmap>=1.6,<2.0
-          pip install seaborn-extensions>=0.2.0 outdated>=0.2.2 ordered-set>=4.1.0 urlpath>=1.2.0 PyYAML>=6.0
-          pip install astir==0.1.5 DeepCell==0.12.6
+          pip install "numpy<2.0" "scipy>=1.11,<1.16" "pandas>=2.0,<3.0" "matplotlib>=3.7,<3.11"
+          pip install "scikit-image==0.19.3" "tifffile==2021.11.2" "networkx>=2.6,<3.0"
+          pip install "seaborn>=0.13,<0.14" "fastcluster==1.2.6"
+          pip install "imctools>=2.1.8" "joblib>=1.2,<1.6" "leidenalg>=0.10.2" "python-louvain>=0.16"
+          pip install "scanpy>=1.9,<1.12" "bbknn>=1.6" "numpy-groupies>=0.9,<0.12" "parmap>=1.6,<2.0"
+          pip install "seaborn-extensions>=0.2.0" "outdated>=0.2.2" "ordered-set>=4.1.0" "urlpath>=1.2.0" "PyYAML>=6.0"
+          pip install "astir==0.1.5" "DeepCell==0.12.6"
           pip install -e .
 
       - name: Test with pytest
@@ -122,16 +108,9 @@ jobs:
         run: |
           ${{ env.pythonLocation }}/bin/python -m pip install --upgrade pip setuptools wheel
           ${{ env.pythonLocation }}/bin/python -m pip install pytest pytest-cov
-
-          ${{ env.pythonLocation }}/bin/pip install numpy<2.0 scipy>=1.11,<1.16 pandas>=2.0,<3.0 matplotlib>=3.7,<3.11 \
-              scikit-image==0.19.3 tifffile==2021.11.2 networkx>=2.6,<3.0 \
-              seaborn>=0.13,<0.14 fastcluster==1.2.6
-          ${{ env.pythonLocation }}/bin/pip install imctools>=2.1.8 joblib>=1.2,<1.6 leidenalg>=0.10.2 \
-              python-louvain>=0.16 scanpy>=1.9,<1.12 bbknn>=1.6 \
-              numpy-groupies>=0.9,<0.12 parmap>=1.6,<2.0 \
-              seaborn-extensions==0.1.1 outdated>=0.2.2 ordered-set>=4.1.0 \
-              urlpath>=1.2.0 PyYAML>=6.0
-          ${{ env.pythonLocation }}/bin/pip install astir==0.1.5 DeepCell==0.12.6
+          ${{ env.pythonLocation }}/bin/pip install "numpy<2.0" "scipy>=1.11,<1.16" "pandas>=2.0,<3.0" "matplotlib>=3.7,<3.11" "scikit-image==0.19.3" "tifffile==2021.11.2" "networkx>=2.6,<3.0" "seaborn>=0.13,<0.14" "fastcluster==1.2.6"
+          ${{ env.pythonLocation }}/bin/pip install "imctools>=2.1.8" "joblib>=1.2,<1.6" "leidenalg>=0.10.2" "python-louvain>=0.16" "scanpy>=1.9,<1.12" "bbknn>=1.6" "numpy-groupies>=0.9,<0.12" "parmap>=1.6,<2.0" "seaborn-extensions==0.1.1" "outdated>=0.2.2" "ordered-set>=4.1.0" "urlpath>=1.2.0" "PyYAML>=6.0"
+          ${{ env.pythonLocation }}/bin/pip install "astir==0.1.5" "DeepCell==0.12.6"
           ${{ env.pythonLocation }}/bin/pip install -e .
 
       - name: Test with pytest