Dockerfile

FROM rocker/binder:3.6.0
MAINTAINER "Ed Jee" edjee96@gmail.com


## Copies your repo files into the Docker Container
USER root
COPY . ${HOME}
RUN chown -R ${NB_USER} ${HOME}

## Become normal user again
USER ${NB_USER}

## Run an install.R script, if it exists.
RUN if [ -f install.R ]; then R --quiet -f install.R; fi


# Global site-wide config -- neeeded for building packages
RUN mkdir -p $HOME/.R/ \
    && echo "CXXFLAGS=-O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function -flto -ffat-lto-objects  -Wno-unused-local-typedefs \n" >> $HOME/.R/Makevars

# Config for rstudio user
RUN mkdir -p $HOME/.R/ \
    && echo "CXXFLAGS=-O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function -flto -ffat-lto-objects  -Wno-unused-local-typedefs -Wno-ignored-attributes -Wno-deprecated-declarations\n" >> $HOME/.R/Makevars \
    && echo "rstan::rstan_options(auto_write = TRUE)\n" >> /home/rstudio/.Rprofile \
    && echo "options(mc.cores = parallel::detectCores())\n" >> /home/rstudio/.Rprofile