Merge pull request #245 from ESHackathon/dev

Update from Dev

Author: TNRiley

CITATION.cff

@@ -0,0 +1,44 @@
+cff-version: 1.2.0
+message: "If you use this software, please cite it as below."
+authors:
+  - family-names: "Riley"
+    given-names: "Trevor N."
+    orcid: "https://orcid.org/0000-0002-6834-9802"
+  - family-names: "Young"
+    given-names: "Sarah"
+    orcid: "https://orcid.org/0000-0002-8301-5106"
+  - family-names: "Paxton"
+    given-names: "Avery B."
+    orcid: "https://orcid.org/0000-0002-4871-9167"
+  - family-names: "Wallrich"
+    given-names: "Lukas"
+    orcid: "https://orcid.org/0000-0003-2121-5177"
+  - family-names: "Hair"
+    given-names: "Kaitlyn"
+    orcid: "https://orcid.org/0000-0003-0180-7343"
+  - family-names: "Grainger"
+    given-names: "Matthew J."
+    orcid: "https://orcid.org/0000-0001-8426-6495"
+title: "CiteSource: An R Package for Data-Driven Search Strategy Development and Enhanced Evidence Synthesis Reporting"
+version: 0.1.1
+doi: TBD 
+url: "https://github.com/ESHackathon/CiteSource"
+preferred-citation:
+  type: article
+  authors:
+    - family-names: "Riley"
+      given-names: "Trevor N."
+    - family-names: "Young"
+      given-names: "Sarah"
+    - family-names: "Paxton"
+      given-names: "Avery B."
+    - family-names: "Wallrich"
+      given-names: "Lukas"
+    - family-names: "Hair"
+      given-names: "Kaitlyn"
+    - family-names: "Grainger"
+      given-names: "Matthew J."
+  title: "CiteSource: An R Package for Data-Driven Search Strategy Development and Enhanced Evidence Synthesis Reporting"
+  journal: "Research Synthesis Methods"
+  year: 2026
+  doi: https://doi.org/10.1017/rsm.2026.10084

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: CiteSource
-Title: Analyze the Utility of Information Sources and Retrieval Methodologies for Evidence Synthesis
+Title: An R package for data-driven search strategy development and enhanced evidence synthesis reporting
 Version: 0.1.1
 Date: 2023-06-22
 Authors@R: c(
@@ -60,9 +60,8 @@ Suggests:
     progressr,
     shinybusy,
     shinyWidgets,
-    testthat (>= 3.0.0)
-Additional_repositories:
-    https://github.com/camaradesuk/ASySD
+    testthat (>= 3.0.0),
+    plogr
 VignetteBuilder: 
     knitr
 Config/testthat/edition: 3
@@ -72,4 +71,5 @@ RoxygenNote: 7.2.3
 Depends: 
     R (>= 3.5.0)
 Remotes:
-    camaradesuk/ASySD
+    camaradesuk/ASySD,
+    plogr=url::https://cran.r-project.org/src/contrib/Archive/plogr/plogr_0.2.0.tar.gz

README.md

@@ -4,8 +4,9 @@
 
 <!-- badges: start -->
 [![R-CMD-check](https://github.com/ESHackathon/CiteSource/workflows/R-CMD-Check/badge.svg)](https://github.com/ESHackathon/CiteSource/actions)
-[![Status](https://img.shields.io/badge/Status-Work%20in%20Progress-orange)](https://github.com/ESHackathon/CiteSource)
+[![Status](https://img.shields.io/badge/Status-Active-brightgreen)](https://github.com/ESHackathon/CiteSource)
 [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
+[![DOI](https://img.shields.io/badge/DOI-10.1038/s41586--020--2649--2-blue)](https://doi.org/10.1017/rsm.2026.10084)
 <!-- badges: end -->
 
 ## About the Package
@@ -20,6 +21,10 @@ Development of this project began as part of the Evidence Synthesis Hackathon an
 
 CiteSource was created under [the General Public License (>=v3)](https://www.gnu.org/licenses/gpl-3.0.html). 
 
+**Citing CiteSource**
+
+Riley, T. N., Young, S., Paxton, A. B., Wallrich, L., Hair, K., & Grainger, M. J. (2026). CiteSource: An R Package for Data-Driven Search Strategy Development and Enhanced Evidence Synthesis Reporting. Research Synthesis Methods. (DOI/PUBLICATION FORTHCOMING)
+
 **Shiny Web Application**
 
 Whether you know R or not, we want you to be able to use CiteSource! Check out our [CiteSource Shiny App!](https://litrev.shinyapps.io/CiteSource/) 

inst/shiny-app/CiteSource/app.R

@@ -385,11 +385,19 @@ ui <- shiny::navbarPage("CiteSource",
                                 shiny::h6("Note that you can only download the data after you have run the deduplication. Also, you are only able to re-upload CSV and RIS files to continue with CiteSource, so please use these formats if you want that option."),
                                 shiny::downloadButton("downloadCsv", "Download csv"),
                                 shiny::downloadButton("downloadRis", "Download RIS"),
-                                shiny::downloadButton("downloadBib", "Download BibTex")
+                                shiny::downloadButton("downloadBib", "Download BibTex"),
+                                shiny::hr(),
+                                shiny::wellPanel(
+                                  shiny::h5("Cite CiteSource"),
+                                  shiny::p("If you use these results in a publication, please cite the software:"),
+                                  shiny::tags$code("Riley, T., Young, S., Paxton, A., Wallrich, L., Hair, K., & Grainger, M. (2026). CiteSource: An R package for data-driven search strategy development and enhanced evidence synthesis reporting. Research Synthesis Methods. https://doi.org/10.1017/rsm.2026.10084"),
+                                  shiny::br(),
+                                  shiny::a("View Publication", href = "https://doi.org/10.1017/rsm.2026.10084", target = "_blank")
                               )
                             )
                           )
                         )
+                      )
 )
 
 

inst/shiny-app/CiteSource/www/about.md

@@ -9,6 +9,13 @@ CiteSource was developed as part of the [Evidence Synthesis Hackathon](https://w
 
 ---
 
+### How to Cite
+If you use CiteSource in your research, please cite the following publication:
+
+Riley, T., Young, S., Paxton, A., Wallrich, L., Hair, K., & Grainger, M. (2026). CiteSource: An R package for data-driven search strategy development and enhanced evidence synthesis reporting. Research Synthesis Methods. https://doi.org/10.1017/rsm.2026.10084
+
+---
+
 ### Key Features:
 
 <details>